Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508899 |
| gene name | LOC100136537 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 29924226 ~ 29927553 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ubiquitin/ribosomal fusion protein homologue, partial |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02927 | RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021589797.2 | True | 578 | mRNA | 0.47 | 5 | 29924226 | 29927553 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944851 | NA | coding | upstream | 3020 | 29914830 ~ 29921206 (+) |
| LOC110508896 | NA | coding | upstream | 18200 | 29904340 ~ 29906026 (+) |
| LOC110508895 | LOC106599036 | coding | upstream | 30846 | 29888003 ~ 29893380 (+) |
| LOC110508893 | marh2 | coding | upstream | 46907 | 29873489 ~ 29877319 (+) |
| LOC110508889 | LOC106599045 | coding | upstream | 262472 | 29410322 ~ 29661754 (+) |
| LOC110508902 | LOC106599020 | coding | downstream | 61087 | 29988640 ~ 29991589 (+) |
| LOC110508214 | LOC106569003 | coding | downstream | 336597 | 30264150 ~ 30265990 (+) |
| LOC110508911 | LOC106598992 | coding | downstream | 356367 | 30283920 ~ 30336939 (+) |
| LOC110508216 | NA | coding | downstream | 360701 | 30288254 ~ 30299223 (+) |
| LOC110508913 | LOC106598990 | coding | downstream | 419855 | 30347408 ~ 30353668 (+) |
| G2126300 | NA | non-coding | upstream | 23906 | 29900077 ~ 29900320 (+) |
| G2126297 | NA | non-coding | upstream | 37862 | 29886065 ~ 29886364 (+) |
| G2126288 | NA | non-coding | upstream | 57906 | 29866105 ~ 29866320 (+) |
| G2126287 | NA | non-coding | upstream | 58798 | 29865087 ~ 29865428 (+) |
| G2126269 | NA | non-coding | upstream | 87942 | 29834989 ~ 29836284 (+) |
| G2126339 | NA | non-coding | downstream | 27698 | 29955251 ~ 29956186 (+) |
| G2126322 | NA | non-coding | downstream | 50341 | 29977894 ~ 29979426 (+) |
| G2126323 | LOC106599023 | non-coding | downstream | 53479 | 29981032 ~ 29982292 (+) |
| G2126320 | NA | non-coding | downstream | 57206 | 29984759 ~ 29985703 (+) |
| G2126318 | NA | non-coding | downstream | 58323 | 29985876 ~ 29986384 (+) |
| G2125614 | LOC106599059 | other | upstream | 600842 | 29320743 ~ 29323384 (+) |
| LOC110508880 | NA | other | upstream | 649775 | 29270737 ~ 29274454 (+) |
| LOC110508851 | LOC106599130 | other | upstream | 1385814 | 28522217 ~ 28551515 (+) |
| LOC110508827 | LOC106599210 | other | upstream | 2200238 | 27720549 ~ 27725061 (+) |
| G2123170 | NA | other | upstream | 2814944 | 27106034 ~ 27109282 (+) |
| G2126497 | NA | other | downstream | 282694 | 30210247 ~ 30211633 (+) |
| kcnn1a | LOC106598974 | other | downstream | 607298 | 30534338 ~ 30592397 (+) |
| G2127299 | LOC106598972 | other | downstream | 713134 | 30640687 ~ 30641243 (+) |
| LOC110508221 | LOC106598877 | other | downstream | 1712749 | 31594783 ~ 31643462 (+) |
| G2128189 | NA | other | downstream | 1811759 | 31739312 ~ 31740070 (+) |
