LOC110508897 (LOC106599029)


Basic Information

Item Value
gene id LOC110508897
gene name LOC106599029
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29929002 ~ 29960541 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589794.2
AGCCATAGAGCGCTGCACCGCGCGCAGCTGGTGTTGTCTGGATATGAAATGTAACCAATAAAAAAAGTATCTCATGCCAAGCGATACTTGGTAACCAGTGTAGAAGACTGCACGCTTTTCACTCACATATTGCGCCTTCAAGAGGAATACAACCTGAGCGTCGCGAGGAACTGCGTTACAACAAGGTTACTGAAGTGCAGTCAGAAAGAAAAACTGAGAAATCTACATGATGGACTGCCGGACTGTGGCTAATGATACACATTGCTCCAGTTTCGTGGTGGCATCGATGTCCGACGTCGTGGCAAGCTTTTTCAAGTGAAGGGACAGAGCGCATATAATTTTATTGACAGCGAATGTCCACAGTATTCATAGCCAATTCTTGCCCTTTGCAGTGCAATTCCGGTGGTATACGGAAGCATCCCTATACTGACACAAATAAGAGGAAGGATTACAGCTCCAGTGTTCAACATAAAGGATCCCACATTGCAGCTCGACCAATAGATCTTATTCATCTTTTACAACGAAATGGGAAAGGATACCTCTGCTGCCTTATAAGATGTATCCTCAACATCGAGAAAGGGAGCAGCCAATCTTCAGTGCCAGGGCCCATGTGTTCCAGATCGACCCAAACACCAAGAGGAACTGGATCCCCGCCAGCAAGCATGCCGTCACCGTCTCCTTCTTCTACGACGGCAACAGGAACGTGTACCGCATCATCAGCGTGGGTGGTACGAAGGCCATCATCAACTGCACCATCACACCGAGCATGACGTTCACCAGGACCTCGCAGAAGTTCGGCCAGTGGGCGGACAGCAGGGCCAACACGGTCTACGGCCTGGGCTTCGCTACAGAGCAGCAGCTGCACCAGTTTTCTGAGCGGTTTAAGGAGGTGAAAGAGGCTGCCCGTCTTGCACGTGAAAAGTCCCAGGATAAGATGGAGTTGGTCAACACTGCTCTCAGCATCGCTGCCCCACAGTTCTCACAGGACCTCGGTGACGAGCTCCAGTCTCCGCCGGTGATGTGTGTGAACGGTCCTGAGGACAAGATGTTCCGCAGCCAAAGCGCAGACATCACACTGTCTTCTGAGAAGGAGCGTATTAAAAAGATGCTTTCTGAAGGGTCTATCTGCGAGATGAACCTGGAGGCAGAGCTCTTCACCCTGCAGGACAGCAACTCCAAGCTGGTGTCAGCGTTACATGAAGCTAATAACAACGTGCAGCAGTGGAAGAAGCAGCTAGCTGCCTACCAGGAGGAGACGGAGAGGCTACGAGACCAGGTGGCTGATCTGGAAGCACATGGCGGCCACGGTCCTAGTGACATGCTAAAGGACGAGCTGACTCGGTCTCTGGAGGAACTGGAGGCCCTGCTCAAGGCTAAAGACGAGGAAATCCACATTCTGCAGAACAAGAAATCAGAATACCATGAGatggagcaggagagagaagaagCCATACATAGATTACAGGAGATGGAGATGCGTAACCTGGAGCTGGAGCGGCGGGTGCAGAATGCCGAGCAGAACCTGGCCGCCTCCCTAGAGGAGCGGGACCGCACAGAGAGTGAGGTGCAGAGGGCCATCGAGATCCTGGACATCAAGCTCTTTGACCTGAACGACCTCCGGCAGAGCCTTGTCAAGCTGATTGACAAATGATGCCAAAGAGGAAGAGTCTGTTGGGGATGGCCAATGCAAAGAGTGGAAAAAGAGATGGAGCTGGTCCTCTCCTGCTATAAAGCACAACACCGCTTCTGCTGTGGGAAGATTGCTGCGTCGCTGTACTGTACTTTCCAGCTTGTTAAGCAATATGTTGTGGTGTTACCtaggcagtgtttcccaacccagGTCCTCCAttgtacatttttattgtaacctggacaagcacacctaattcaacttgtcaactaatcatcaagccctcactGAGTTGAATTAGGTGTGTTTGTCAAGGGCTACAACAAAACTGTgtactgttggggatactggagaaccagggttgggaaacactgaccaaGGCAGTGTATCTGCTGTGTCCGGTGTTGTGCTGCGTTTCATGTTGCTTTCTTAAGCAACATTCAAGGCAATAGCCTTAAGTGCTAGGCTGTTTATTTGCGATTAGGAATATTGTCAAGAATGAGAACAATGACATCATTAGGTGCTTGTAGATTTTGAATTCAACTGATTTTATACAAATTTGGTAAT
>XM_021589795.2
AGCCATAGAGCGCTGCACCGCGCGCAGCTGGTGTTGTCTGGATATGAAATGTAACCAATAAAAAAAGTATCTCATGCCAAGCGATACTTGGTAACCAGTGTAGAAGACTGCACGCTTTTCACTCACATATTGCGCCTTCAAGAGGAATACAACCTGAGCGTCGCGAGGAACTGCGTTACAACAAGGTTACTGAAGTGCAGTCAGAAAGAAAAACTGAGAAATCTACATGATGGACTGCCGGACTGTGGCTAATGATACACATTGCTCCAGTTTCGTGGTGGCATCGATGTCCGACGTCGTGGCAAGCTTTTTCAAGTGAAGGGACAGAGCGCATATAATTTTATTGACAGCGAATGTCCACAGTATTCATAGCCAATTCTTGCCCTTTGCAGTGCAATTCCGGTGGTATACGGAAGCATCCCTATACTGACACAAATAAGAGGAAGGATTACAGCTCCAGTGTTCAACATAAAGGATCCCACATTGCAGCTCGACCAATAGATCTTATTCATCTTTTACAACGAAATGGGAAAGGATACCTCTGCTGCCTTATAAGATGTATCCTCAACATCGAGAAAGGGAGCAGCCAATCTTCAGTGCCAGGGCCCATGTGTTCCAGATCGACCCAAACACCAAGAGGAACTGGATCCCCGCCAGCAAGCATGCCGTCACCGTCTCCTTCTTCTACGACGGCAACAGGAACGTGTACCGCATCATCAGCGTGGGTGGTACGAAGGCCATCATCAACTGCACCATCACACCGAGCATGACGTTCACCAGGACCTCGCAGAAGTTCGGCCAGTGGGCGGACAGCAGGGCCAACACGGTCTACGGCCTGGGCTTCGCTACAGAGCAGCAGCTGCACCAGTTTTCTGAGCGGTTTAAGGAGGTGAAAGAGGCTGCCCGTCTTGCACGTGAAAAGTCCCAGGATAAGATGGAGTTGGTCAACACTGCTCTCAGCATCGCTGCCCCACAGGACCTCGGTGACGAGCTCCAGTCTCCGCCGGTGATGTGTGTGAACGGTCCTGAGGACAAGATGTTCCGCAGCCAAAGCGCAGACATCACACTGTCTTCTGAGAAGGAGCGTATTAAAAAGATGCTTTCTGAAGGGTCTATCTGCGAGATGAACCTGGAGGCAGAGCTCTTCACCCTGCAGGACAGCAACTCCAAGCTGGTGTCAGCGTTACATGAAGCTAATAACAACGTGCAGCAGTGGAAGAAGCAGCTAGCTGCCTACCAGGAGGAGACGGAGAGGCTACGAGACCAGGTGGCTGATCTGGAAGCACATGGCGGCCACGGTCCTAGTGACATGCTAAAGGACGAGCTGACTCGGTCTCTGGAGGAACTGGAGGCCCTGCTCAAGGCTAAAGACGAGGAAATCCACATTCTGCAGAACAAGAAATCAGAATACCATGAGatggagcaggagagagaagaagCCATACATAGATTACAGGAGATGGAGATGCGTAACCTGGAGCTGGAGCGGCGGGTGCAGAATGCCGAGCAGAACCTGGCCGCCTCCCTAGAGGAGCGGGACCGCACAGAGAGTGAGGTGCAGAGGGCCATCGAGATCCTGGACATCAAGCTCTTTGACCTGAACGACCTCCGGCAGAGCCTTGTCAAGCTGATTGACAAATGATGCCAAAGAGGAAGAGTCTGTTGGGGATGGCCAATGCAAAGAGTGGAAAAAGAGATGGAGCTGGTCCTCTCCTGCTATAAAGCACAACACCGCTTCTGCTGTGGGAAGATTGCTGCGTCGCTGTACTGTACTTTCCAGCTTGTTAAGCAATATGTTGTGGTGTTACCtaggcagtgtttcccaacccagGTCCTCCAttgtacatttttattgtaacctggacaagcacacctaattcaacttgtcaactaatcatcaagccctcactGAGTTGAATTAGGTGTGTTTGTCAAGGGCTACAACAAAACTGTgtactgttggggatactggagaaccagggttgggaaacactgaccaaGGCAGTGTATCTGCTGTGTCCGGTGTTGTGCTGCGTTTCATGTTGCTTTCTTAAGCAACATTCAAGGCAATAGCCTTAAGTGCTAGGCTGTTTATTTGCGATTAGGAATATTGTCAAGAATGAGAACAATGACATCATTAGGTGCTTGTAGATTTTGAATTCAACTGATTTTATACAAATTTGGTAAT
>XM_036966374.1
TGTAGCCATAGAGCGCTGCACCGCGCGCAGCTGGTGTTGTCTGGATATGAAATGTAACCAATAAAAAAAGTATCTCATGCCAAGCGATACTTGGTAACCAGTGTAGAAGACTGCACGCTTTTCACTCACATATTGCGCCTTCAAGAGGAATACAACCTGAGCGTCGCGAGGAACTGCGTTACAACAAGGTTACTGAAGTGCAGTCAGAAAGAAAAACTGAGAAATCTACATGATGGACTGCCGGACTGTGGCTAATGATACACATTGCTCCAGTTTCGTGGTGGCATCGATGTCCGACGTCGTGGCAAGCTTTTTCAAGTGAAGGGACAGAGCGCATATAATTTTATTGACAGCGAATGTCCACAGTATTCATAGCCAATTCTTGCCCTTTGCAGTGCAATTCCGGTGGTATACGGAAGCATCCCTATACTGACACAAATAAGAGGAAGGATTACAGCTCCAGTGTTCAACATAAAGGATCCCACATTGCAGCTCGACCAATAGATCTTATTCATCTTTTACAACGAAATGGGAAAGGATACCTCTGCTGCCTTATAAGATGTATCCTCAACATCGAGAAAGGGAGCAGCCAATCTTCAGTGCCAGGGCCCATGTGTTCCAGATCGACCCAAACACCAAGAGGAACTGGATCCCCGCCAGCAAGCATGCCGTCACCGTCTCCTTCTTCTACGACGGCAACAGGAACGTGTACCGCATCATCAGCGTGGGTGGTACGAAGGCCATCATCAACTGCACCATCACACCGAGCATGACGTTCACCAGGACCTCGCAGAAGTTCGGCCAGTGGGCGGACAGCAGGGCCAACACGGTCTACGGCCTGGGCTTCGCTACAGAGCAGCAGCTGCACCAGTTTTCTGAGCGGTTTAAGGAGGTGAAAGAGGCTGCCCGTCTTGCACGTGAAAAGTCCCAGGATAAGATGGAGTTGGTCAACACTGCTCTCAGCATCGCTGCCCCACAGTTCTCACAGGACCTCGGTGACGAGCTCCAGTCTCCGCCGGTGATGTGTGTGAACGGTCCTGAGGACAAGATGTTCCGCAGCCAAAGCGCAGACATCACACTGTCTTCTGAGAAGGAGCGTATTAAAAAGATGCTTTCTGAAGGGTCTATCTGCGAGATGAACCTGGAGGCAGAGCTCTTCACCCTGCAGGACAGCAACTCCAAGCTGGTGTCAGCGTTACATGAAGCTAATAACAACGTGCAGCAGTGGAAGAAGCAGCTAGCTGCCTACCAGGAGGAGACGGAGAGGCTACGAGACCAGGTGGCTGATCTGGAAGCACATGGCGGCCACGGTCCTAGTGACATGCTAAAGGACGAGCTGACTCGGTCTCTGGAGGAACTGGAGGCCCTGCTCAAGGCTAAAGACGAGGTCAGAGGGCAAGAGACATACAGGGGAAACGAGAGGAAATCCACATTCTGCAGAACAAGAAATCAGAATACCATGAGatggagcaggagagagaagaagCCATACATAGATTACAGGAGATGGAGATGCGTAACCTGGAGCTGGAGCGGCGGGTGCAGAATGCCGAGCAGAACCTGGCCGCCTCCCTAGAGGAGCGGGACCGCACAGAGAGTGAGGTGCAGAGGGCCATCGAGATCCTGGACATCAAGCTCTTTGACCTGAACGACCTCCGGCAGAGCCTTGTCAAGCTGATTGACAAATGATGCCAAAGAGGAAGAGTCTGTTGGGGATGGCCAATGCAAAGAGTGGAAAAAGAGATGGAGCTGGTCCTCTCCTGCTATAAAGCACAACACCGCTTCTGCTGTGGGAAGATTGCTGCGTCGCTGTACTGTACTTTCCAGCTTGTTAAGCAATATGTTGTGGTGTTACCtaggcagtgtttcccaacccagGTCCTCCAttgtacatttttattgtaacctggacaagcacacctaattcaacttgtcaactaatcatca

Function

NR:

description
PREDICTED: homer protein homolog 3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589794.2 False 2197 mRNA 0.50 11 29929002 29960538
XM_021589795.2 False 2188 mRNA 0.50 10 29929002 29960538
XM_036966374.1 True 1947 mRNA 0.51 11 29929290 29960541

Neighbor

gene id symbol gene type direction distance location
LOC110508894 LOC106599038 coding downstream 45467 29876749 ~ 29883535 (-)
slc25a36a LOC106568938 coding downstream 56818 29821881 ~ 29872184 (-)
LOC110508890 LOC105021148 coding downstream 122268 29682605 ~ 29806734 (-)
nmnat3 nmnat3 coding downstream 535078 29384872 ~ 29393924 (-)
LOC118944841 LOC106568934 coding downstream 550563 29370881 ~ 29378439 (-)
LOC110508900 LOC106599024 coding upstream 7024 29967565 ~ 29977338 (-)
LOC110508901 LOC106599023 coding upstream 20562 29981103 ~ 29984528 (-)
LOC110508903 LOC106599022 coding upstream 31052 29991593 ~ 29998944 (-)
LOC110508904 LOC106599012 coding upstream 38913 29999454 ~ 30032487 (-)
LOC110508906 LOC106568950 coding upstream 140100 30100641 ~ 30114984 (-)
G2126937 NA non-coding downstream 25161 29903521 ~ 29903841 (-)
G2126935 NA non-coding downstream 28608 29900128 ~ 29900394 (-)
G2126918 NA non-coding downstream 92663 29835008 ~ 29836339 (-)
G2126846 NA non-coding downstream 228132 29700531 ~ 29700870 (-)
G2126894 NA non-coding upstream 17248 29977789 ~ 29979415 (-)
G2126961 NA non-coding upstream 25352 29985893 ~ 29986103 (-)
G2126963 LOC106572245 non-coding upstream 26795 29987336 ~ 29987603 (-)
G2126964 NA non-coding upstream 27265 29987806 ~ 29988218 (-)
G2126966 NA non-coding upstream 28962 29989503 ~ 29991551 (-)
LOC118944842 NA other downstream 805260 29118684 ~ 29123806 (-)
G2125813 NA other downstream 850258 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1043148 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1236532 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1265576 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 440672 30399711 ~ 30401807 (-)
G2127177 NA other upstream 473894 30434435 ~ 30434854 (-)
G2127455 NA other upstream 593048 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 744544 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1283550 31244091 ~ 31244692 (-)

Expression


Co-expression Network