LOC110508900 (LOC106599024)


Basic Information

Item Value
gene id LOC110508900
gene name LOC106599024
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29967565 ~ 29977338 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589798.2
GCTCTTTGCATTTTGTGCTGTGTGCAAGGTGTTACGTCATTACTTCGAGTGGGAGTTGAGGCTCACGAGACCGTGTGTTCTCAGTTTATTCATGTGCTTAGGTATTTCGATATTTGTTTAAGTTCAATTTTGGCAGGGATATCTACACTTTGTTTAGTTAGCGATTCAATTTTAAATATCATTCTGAAATATCACTGTTGGTGGAGAAAATGAGTGTTGAGGCGTACGGGCCGAGCTCGCAGACTCTCACGTTCCTGGACACTGAGGAAGCGGAGTTGCTTGGAGCAGATACCCAGGGTTCGGAGTATGAGTTCACGGATTTTACCCTGCCGAGCCAGACTCAAACAGGCCAAACGCAGAGTCAGTTGGAAAATCAGGTGAATGGGCCTGATGGAGTACAGCAGAATGGGGATGACCCTGTTGTGAAAGCAAGTCAACTTCTTGCAGAGTTGAACTTTGAAGAAGACGAGGAAGACAGCTATTATACTAAAGACCTCCCAGTCCACGCATGCAGttactgtggCATTCACGATCCTGCTTGTGTGGTGTATTGCAACACCAGCAAGAAGTGGTTTTGCAATGGACGTGGCAATACATCTGGCAGCCACATTGTGAACCACCTGGTCAGAGCCAAGTCCAAGGAGGTGACTCTGCACAAGGATGGTCCTTTGGGGGAGACGGTGCTGGAGTGCTACAACTGTGGCTGTCGCAACGTCTTCCTCCTGGGGTTCATCCCTGCCAAGGCAGACTCTGTGGTGGTACTGCTTTGCAGGCAGCCATGTGCCAGTCAGAGCAGTCTGAAAGACATCAACTGGGACAGCTCCCAGTGGCAGCCGCTGATCCAGGACCGCTGCTTCCTGTCCTGGCTGGTTAAGATCCCCTCTGAGCAGGAGCAGCTCCGGGCCCGCCAGATCACCGCCCAGCAGATAAACAAGCTTGAGGAGCTCTGGAAGGAAAACCCCACAGCCACTCTGGAGGACCTGGAGAAGCCCGGCGTGGACGAGGAGCCTCAGCACGTGTTGCTGCGCTACGAGGATGCCTACCAGTACCAGAACATATTTGGCCCCCTGGTCAAACTGGAGGCTGACTACGATAAGAAACTCAAAGAGTCCCAGACCCAAGACAATATTACTGTCAGGTGGGACTTGGGACTCAATAAAAAGCGGATTGCTTATTTCAGCCTTCCCAAGACGGACTCAGGTGACATGCGCCTGATGCAGGGAGATGAGATTTGCCTGAGGTACAAGGGAGACCTTGCCCCACTCTGGAAAGGCATTGGACATGTCATCAAAGTCCCAGACAACTATGGCGATGAGATAGCCATTGAGCTGAGGAGCAGTGCTGGGGCCCCCGTGGAAGTACCACACAACTTCCAGGTTGACTTTGTGTGGAAGTCCACCTCCTTTGACCGGATGCAAAGTGCCCTGAAGACCTTTGCCGTGGACGAGACCTCTGTGTCCGGGTACATCTACCACAAGCTGCTGGGTCACGAGGTGGAGGATGTGGTCATCAAGTGTCAGCTGCCCAAACGCTTCACCGCCCAGGGCCTGCCTGACCTCAACCACTCACAGGTATATGCTGTGAAGACTGTGCTGCAGCGTCCTCTCAGTCTCATCCAGGGGCCCCCTGGCACGGGGAAAACTGTCACCTCTGCCACTGTAGTGTACCACCTGGCCAGACAGGGCAACGGgcctgtGCTGGTGTGTGCTCCCAGTAACATTGCGgtggaccagctgactgagaAGATCCACATGTCAGGTCTGAAGGTGGTGAGGCTGTCTGCCAAGAGCAGAGAGGCCATCGACTCCCCTGTGTCCTTCCTGGCTCTGCACAACCAGATCCGCAACATGGACAGTATACCAGAGCTTCAGAAGCTCCAGCAGCTGAAGGACGAGACTGGGGAGCTGTCCTCCTCGGACGAGAAGCGCTACAGGGCCCTGAAGCGCACCGCCGAGAGGGAACTACTTATGAATGCTGATGTGATCTGCTGTACCTGTGTGGGGGCAGGAGACCCCCGCCTGGCCAAGATGCAGTTCCGCTCCATCCTCATTGATGAGAGCACCCAGGCCACTGAGCCAGAGTGTATGGTGCCTGTCATACTGGGGGCCAAGCAGcTGATCCTGGTGGGAGACCACTGCCAGCTGGGTCCAGTAGTGATGTGTAAGAAGGCTGCCAAGGCGGGCCTGTCCCAGTCCCTGTTTGAGCGTCTCGTGGTGCTGGGCATCAGGCCCATCCGTCTGCAGGTGCAGTACCGTATGCACCCAGCCCTCAGCGCTTTCCCCTCCAACATCTTCTACGAGGGCTCCTTGCAGAACGGAGTCACCGCAGCTGACCGCATCAAGAAAGGCTTTGACTTCCAGTGGCCACAACCAGACAAGCCCATGTTCTTCTACGTGACCCTGGGCCAGGAAGAAATTGCAAGCTCTGGAACCTCCTATCTTAACAGAACTGAGGCTTCCAACGTGGAGAAGATCACCACCAGGCTGCTAAAGGCTGGGGCCAAGCCTGACCAGATAGGCATCATCACCCCCTACGAGGGCCAGAGGTCCTACCTGGTGCAGTACATGCAGTTCAGTGGCTCCCTCCACACCAAGCTCTACCAGGAGGTGGAGATAGCCAGCGTTGATGCGTTCCAGGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTTAGAGCCAACGAGCACCAGGGCATTGGCTTCCTCAATGACCCACGCCGTCTCAACGTGGCTCTCACCAGGGCCAGgtatgGGGTTATCATCGTGGGCAACCCCAAGGCCCTGTCCAAGCAGCCTCTGTGGAACCACCTGCTCAACTACTATAAGGAGCAGAAGGTTCTGGTGGAGGGACCCCTCAACAACCTGAGGGAGAGCCTCATGCAGTTCAGCAAGCCCCGCAAGCTGGTCAACGCCATCAACCCTGGGGGCCGTTTCATGAGCACAGCCATGTATGATGCAAGGGAGGCTCTTATTCCTGGATCTGTGTATGACCGCAGCAGCACTGGACGTTCATCCAACATGTACTTCCAGACCCACGACCAGATCGGCATGATTGGTCCGGGCCCCATGGCCTCCATGAACATTCCCTTCAACCTGGTCATGCCCCCCATGCCGCCGCCAGGCTACCTGGGCCAGGTCCACTGCCCCCCAGCAGGCCGTGGTGGAGGTATGAAGGGTAAGGCGGGCGGCGGAGGGGTGCGAGGTGGGCGCCAGCGGAGCCGTGGCATGGGGAACCACGGCGGGGGCAGCGGGCAGCACGGCCTCATGAGTGGCAGCCAGGCCAGCCAGGACCTGGGCTCCCAGCCCTTCTCCCAGGGACCCCTCACACAGGGCTACATCACCATGAGCCAGCCTTCCCAGATGAGCCAGCCTGGCCTCTCCCAGCCTGAACTCTCTCAGGACAGCTACCTTGGCGATGAGTTCAAGTCCCAGATTGACGTGGCCCTctcccaagactccacctaccaagGGGAAAGAGCTTATCAACATGGTGTGACTGGACTGTCCCAGTACTAGAGTGTTGTGGGAAAAGGAGCTAGGCCTGTGCTGAGCTTAGTTCGTCGCCATTTTAATCTGGGTAATATCAAAAAAAGAACATATGGATACCCGTTTTCCACTGCTACAACTGAAGCACCACTGTGTGAAAGCAacaggagagagaccgagagaaaccAACCAATCACAAGAGTGAGAGAAAAATGGGGGTAGAGCTGGACAGGACAAGagcgaggaggagggagagagaaggcgctGCTCGCACATGGAGAAAAGGAGAAGCAGCATACGTTGGGGTAGCAGTGTCGGAGCGACAAGCCCTTTGATGATGAGTCGAGGGGTGAAAGGTCATGGATCCTCAATGGGGTCACAGGAGTCACATCCCTGCCACCTCTTCTCCCCCAGGGACCACAAGTTAGTTGGCTGAGGACATTGTTCTCGGAGCAGAGAGACTGAGAAGAGTTCTCACACAACCCTCCAACCTCACTCTACAAAACCGTCTCCTGCCAGCTAGAGAGGGGAAAAAGGGGACGAAACTCTTGAAGCAGTCAGTCGATTTGGGAAAATTTCTAACCTCAAAGTTGATCCGTGCTCATGCTCTGCATTTGAACATGTTTGAGCGAGAGGCGAGAGGTTTTGGGCAGACCAAGAATGGTCTTGTTGAACGTCTCAAACGGAATCAAATGGTGCAGGAGTCGGAAGAATACTGACCATTCATCTTTTTCAACTTTGAGTTGGAAAGTTTTCTACATGAGGTCTGTTGTTGCAGAGGTTTTGAAAGCTGGTGAATTTCACTGGCTTTCCGCTCTGGTCTTTCTGAAGGATAAGTGGTGGAATGGCTCTTGAAACAATTAAAGGAAACATTATTGTCTCGAGATCTGAAGTGGTGGACTTGAAAGATCTGTAGTTTGCGAGACAGGTTTTTGTTGTTTTCTTAAGTCTATCTGTAGTACAAAAA
>XM_021589799.2
GCTCTTTGCATTTTGTGCTGTGTGCAAGGTGTTACGTCATTACTTCGAGTGGGAGTTGAGGCTCACGAGACCGTGTGTTCTCAGTTTATTCATGTGCTTAGGTATTTCGATATTTGTTTAAGTTCAATTTTGGCAGGGATATCTACACTTTGTTTAGTTAGCGATTCAATTTTAAATATCATTCTGAAATATCACTGTTGGTGGAGAAAATGAGTGTTGAGGCGTACGGGCCGAGCTCGCAGACTCTCACGTTCCTGGACACTGAGGAAGCGGAGTTGCTTGGAGCAGATACCCAGGGTTCGGAGTATGAGTTCACGGATTTTACCCTGCCGAGCCAGACTCAAACAGGCCAAACGCAGAGTCAGTTGGAAAATCAGGTGAATGGGCCTGATGGAGTACAGCAGAATGGGGATGACCCTGTTGTGAAAGCAAGTCAACTTCTTGCAGAGTTGAACTTTGAAGAAGACGAGGAAGACAGCTATTATACTAAAGACCTCCCAGTCCACGCATGCAGttactgtggCATTCACGATCCTGCTTGTGTGGTGTATTGCAACACCAGCAAGAAGTGGTTTTGCAATGGACGTGGCAATACATCTGGCAGCCACATTGTGAACCACCTGGTCAGAGCCAAGTCCAAGGAGGTGACTCTGCACAAGGATGGTCCTTTGGGGGAGACGGTGCTGGAGTGCTACAACTGTGGCTGTCGCAACGTCTTCCTCCTGGGGTTCATCCCTGCCAAGGCAGACTCTGTGGTGGTACTGCTTTGCAGGCAGCCATGTGCCAGTCAGAGCAGTCTGAAAGACATCAACTGGGACAGCTCCCAGTGGCAGCCGCTGATCCAGGACCGCTGCTTCCTGTCCTGGCTGGTTAAGATCCCCTCTGAGCAGGAGCAGCTCCGGGCCCGCCAGATCACCGCCCAGCAGATAAACAAGCTTGAGGAGCTCTGGAAGGAAAACCCCACAGCCACTCTGGAGGACCTGGAGAAGCCCGGCGTGGACGAGGAGCCTCAGCACGTGTTGCTGCGCTACGAGGATGCCTACCAGTACCAGAACATATTTGGCCCCCTGGTCAAACTGGAGGCTGACTACGATAAGAAACTCAAAGAGTCCCAGACCCAAGACAATATTACTGTCAGGTGGGACTTGGGACTCAATAAAAAGCGGATTGCTTATTTCAGCCTTCCCAAGACGGACTCAGACATGCGCCTGATGCAGGGAGATGAGATTTGCCTGAGGTACAAGGGAGACCTTGCCCCACTCTGGAAAGGCATTGGACATGTCATCAAAGTCCCAGACAACTATGGCGATGAGATAGCCATTGAGCTGAGGAGCAGTGCTGGGGCCCCCGTGGAAGTACCACACAACTTCCAGGTTGACTTTGTGTGGAAGTCCACCTCCTTTGACCGGATGCAAAGTGCCCTGAAGACCTTTGCCGTGGACGAGACCTCTGTGTCCGGGTACATCTACCACAAGCTGCTGGGTCACGAGGTGGAGGATGTGGTCATCAAGTGTCAGCTGCCCAAACGCTTCACCGCCCAGGGCCTGCCTGACCTCAACCACTCACAGGTATATGCTGTGAAGACTGTGCTGCAGCGTCCTCTCAGTCTCATCCAGGGGCCCCCTGGCACGGGGAAAACTGTCACCTCTGCCACTGTAGTGTACCACCTGGCCAGACAGGGCAACGGgcctgtGCTGGTGTGTGCTCCCAGTAACATTGCGgtggaccagctgactgagaAGATCCACATGTCAGGTCTGAAGGTGGTGAGGCTGTCTGCCAAGAGCAGAGAGGCCATCGACTCCCCTGTGTCCTTCCTGGCTCTGCACAACCAGATCCGCAACATGGACAGTATACCAGAGCTTCAGAAGCTCCAGCAGCTGAAGGACGAGACTGGGGAGCTGTCCTCCTCGGACGAGAAGCGCTACAGGGCCCTGAAGCGCACCGCCGAGAGGGAACTACTTATGAATGCTGATGTGATCTGCTGTACCTGTGTGGGGGCAGGAGACCCCCGCCTGGCCAAGATGCAGTTCCGCTCCATCCTCATTGATGAGAGCACCCAGGCCACTGAGCCAGAGTGTATGGTGCCTGTCATACTGGGGGCCAAGCAGcTGATCCTGGTGGGAGACCACTGCCAGCTGGGTCCAGTAGTGATGTGTAAGAAGGCTGCCAAGGCGGGCCTGTCCCAGTCCCTGTTTGAGCGTCTCGTGGTGCTGGGCATCAGGCCCATCCGTCTGCAGGTGCAGTACCGTATGCACCCAGCCCTCAGCGCTTTCCCCTCCAACATCTTCTACGAGGGCTCCTTGCAGAACGGAGTCACCGCAGCTGACCGCATCAAGAAAGGCTTTGACTTCCAGTGGCCACAACCAGACAAGCCCATGTTCTTCTACGTGACCCTGGGCCAGGAAGAAATTGCAAGCTCTGGAACCTCCTATCTTAACAGAACTGAGGCTTCCAACGTGGAGAAGATCACCACCAGGCTGCTAAAGGCTGGGGCCAAGCCTGACCAGATAGGCATCATCACCCCCTACGAGGGCCAGAGGTCCTACCTGGTGCAGTACATGCAGTTCAGTGGCTCCCTCCACACCAAGCTCTACCAGGAGGTGGAGATAGCCAGCGTTGATGCGTTCCAGGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTTAGAGCCAACGAGCACCAGGGCATTGGCTTCCTCAATGACCCACGCCGTCTCAACGTGGCTCTCACCAGGGCCAGgtatgGGGTTATCATCGTGGGCAACCCCAAGGCCCTGTCCAAGCAGCCTCTGTGGAACCACCTGCTCAACTACTATAAGGAGCAGAAGGTTCTGGTGGAGGGACCCCTCAACAACCTGAGGGAGAGCCTCATGCAGTTCAGCAAGCCCCGCAAGCTGGTCAACGCCATCAACCCTGGGGGCCGTTTCATGAGCACAGCCATGTATGATGCAAGGGAGGCTCTTATTCCTGGATCTGTGTATGACCGCAGCAGCACTGGACGTTCATCCAACATGTACTTCCAGACCCACGACCAGATCGGCATGATTGGTCCGGGCCCCATGGCCTCCATGAACATTCCCTTCAACCTGGTCATGCCCCCCATGCCGCCGCCAGGCTACCTGGGCCAGGTCCACTGCCCCCCAGCAGGCCGTGGTGGAGGTATGAAGGGTAAGGCGGGCGGCGGAGGGGTGCGAGGTGGGCGCCAGCGGAGCCGTGGCATGGGGAACCACGGCGGGGGCAGCGGGCAGCACGGCCTCATGAGTGGCAGCCAGGCCAGCCAGGACCTGGGCTCCCAGCCCTTCTCCCAGGGACCCCTCACACAGGGCTACATCACCATGAGCCAGCCTTCCCAGATGAGCCAGCCTGGCCTCTCCCAGCCTGAACTCTCTCAGGACAGCTACCTTGGCGATGAGTTCAAGTCCCAGATTGACGTGGCCCTctcccaagactccacctaccaagGGGAAAGAGCTTATCAACATGGTGTGACTGGACTGTCCCAGTACTAGAGTGTTGTGGGAAAAGGAGCTAGGCCTGTGCTGAGCTTAGTTCGTCGCCATTTTAATCTGGGTAATATCAAAAAAAGAACATATGGATACCCGTTTTCCACTGCTACAACTGAAGCACCACTGTGTGAAAGCAacaggagagagaccgagagaaaccAACCAATCACAAGAGTGAGAGAAAAATGGGGGTAGAGCTGGACAGGACAAGagcgaggaggagggagagagaaggcgctGCTCGCACATGGAGAAAAGGAGAAGCAGCATACGTTGGGGTAGCAGTGTCGGAGCGACAAGCCCTTTGATGATGAGTCGAGGGGTGAAAGGTCATGGATCCTCAATGGGGTCACAGGAGTCACATCCCTGCCACCTCTTCTCCCCCAGGGACCACAAGTTAGTTGGCTGAGGACATTGTTCTCGGAGCAGAGAGACTGAGAAGAGTTCTCACACAACCCTCCAACCTCACTCTACAAAACCGTCTCCTGCCAGCTAGAGAGGGGAAAAAGGGGACGAAACTCTTGAAGCAGTCAGTCGATTTGGGAAAATTTCTAACCTCAAAGTTGATCCGTGCTCATGCTCTGCATTTGAACATGTTTGAGCGAGAGGCGAGAGGTTTTGGGCAGACCAAGAATGGTCTTGTTGAACGTCTCAAACGGAATCAAATGGTGCAGGAGTCGGAAGAATACTGACCATTCATCTTTTTCAACTTTGAGTTGGAAAGTTTTCTACATGAGGTCTGTTGTTGCAGAGGTTTTGAAAGCTGGTGAATTTCACTGGCTTTCCGCTCTGGTCTTTCTGAAGGATAAGTGGTGGAATGGCTCTTGAAACAATTAAAGGAAACATTATTGTCTCGAGATCTGAAGTGGTGGACTTGAAAGATCTGTAGTTTGCGAGACAGGTTTTTGTTGTTTTCTTAAGTCTATCTGTAGTACAAAAA

Function

NR:

description
regulator of nonsense transcripts 1-like isoform X2

GO: NA

KEGG:

id description
K14326 UPF1, RENT1; regulator of nonsense transcripts 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589798.2 False 4452 mRNA 0.54 23 29967565 29977338
XM_021589799.2 True 4449 mRNA 0.54 23 29967565 29977338

Neighbor

gene id symbol gene type direction distance location
LOC110508897 LOC106599029 coding downstream 7024 29929002 ~ 29960541 (-)
LOC110508894 LOC106599038 coding downstream 84030 29876749 ~ 29883535 (-)
slc25a36a LOC106568938 coding downstream 95381 29821881 ~ 29872184 (-)
LOC110508890 LOC105021148 coding downstream 160831 29682605 ~ 29806734 (-)
nmnat3 nmnat3 coding downstream 573641 29384872 ~ 29393924 (-)
LOC110508901 LOC106599023 coding upstream 3765 29981103 ~ 29984528 (-)
LOC110508903 LOC106599022 coding upstream 14255 29991593 ~ 29998944 (-)
LOC110508904 LOC106599012 coding upstream 22116 29999454 ~ 30032487 (-)
LOC110508906 LOC106568950 coding upstream 123303 30100641 ~ 30114984 (-)
LOC110508907 LOC106599005 coding upstream 166697 30144035 ~ 30187260 (-)
G2126937 NA non-coding downstream 63724 29903521 ~ 29903841 (-)
G2126935 NA non-coding downstream 67171 29900128 ~ 29900394 (-)
G2126918 NA non-coding downstream 131226 29835008 ~ 29836339 (-)
G2126894 NA non-coding upstream 451 29977789 ~ 29979415 (-)
G2126961 NA non-coding upstream 8555 29985893 ~ 29986103 (-)
G2126963 LOC106572245 non-coding upstream 9998 29987336 ~ 29987603 (-)
G2126964 NA non-coding upstream 10468 29987806 ~ 29988218 (-)
G2126966 NA non-coding upstream 12165 29989503 ~ 29991551 (-)
LOC118944842 NA other downstream 843823 29118684 ~ 29123806 (-)
G2125813 NA other downstream 888821 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1081711 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1275095 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1304139 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 423875 30399711 ~ 30401807 (-)
G2127177 NA other upstream 457097 30434435 ~ 30434854 (-)
G2127455 NA other upstream 576251 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 727747 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1266753 31244091 ~ 31244692 (-)

Expression


Co-expression Network