LOC110508901 (LOC106599023)


Basic Information

Item Value
gene id LOC110508901
gene name LOC106599023
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29981103 ~ 29984528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589800.2
tgtggacTATtaaggacatgtatttccattgttagagtggtcactgggctatcttgtcaatataatagatcatCTTTGGCAGAGCCCAACTAATTTATCCTGATCAACAGCATCAATATAAATATTTGCTTCCATTCCTCAACCTGACCTCGAACCAGGAACCCCCGAAACACACAGATATCGGTCACCCACGAAGCATATAGCTAGCTACCtcttgctccacaaaagccacggcccgtACGGATTTAAGGAAAACAACTACTtcagtctcagagcgagtgacgtcgcCGATTAAACGCTACTAGCatacaccgctaactagctagacatttcacatcggttatatTATGTAATTTCAACAAAAGGTTAAGCCAAATTTGTAAAATAAATGAGCTCATGCGCTGAGCATGAATTCCATTGCAGTAGGTGGCGATAGGTGGCTGGATGTTGAGGTATAGAGTAGTGTTGTCAACAGCGTAGAAGGACTGGAAGAAACCGAGAACGCTCGCTCGAGCTCTTGCAAAAATAATGAATAGATAGCGGAAGAGAATCGAGGAGGAATTCTCAACTCATCAGGGTTGAAAAAGAGTAGATTAACGTTACATTCTTGCAGAATTTACTATAACTCACAAATAATGGCGACTAAAAGGACGGTAATAGTGACAGGGTTTGAACCTTTTGGCGATCACACCGTGAATGCTAGCTGGGTGGCAGTGCAGGAACTGGAGCGGTTGGGCTTGGGTCAGAGTGTGGACCTATATGTCTGTGAGGTGCCAGTGGAGTACCAGGCAGTTCAGAGTCTACTGCCATCTCTATGGAAACAGCATCAGCCACAGTTGGTGGTCCATGTCGGGGTCTCTGGGATAGCCACCACAGTCACCCTGGAGAAATGTGGCCACAACCACGGCTACAAGCGGGTGGACAACTGCAGCTTCTGTCCAGACTCTCAGTGTTGCATGGACGGTGGTCCTGACTGCATCGATTCAGTCATAGACATGGACCTAGTCTGCAAGAGGGTCAACTCCTCAAGGCTTGGCGTGGCAGTGTCAGTATCAAAGGATGCAGGCCGATACCTGTGTGACTACACCTACTACATGTCGCTGTACCTGGGGAAGGGCAGGTCAGCGTTTGTGCACGTTCCTCCACTAGAGAAGCCCTACAGTGCCCAGGACCTAGGCAGAGCCTTGCAGGCCGTAGTGGGGGAGATGCTGGAGCTTGTGGGTCAATCTGAGGAGGATGACCATGACCACCACCACTGCAGCCACCAGCACCATCAGCATGCTCACTAAATAATGACTTCCGGTGACCTCTGTCCTCAACTCACTGCTCCTGTCCCCAATGGACAGAAAGcacttaaagctggaatccttaattgaaacaataacaaagtggtgaccctgcctctgttttggtaaaaacctgagggatgggcctgaagaaatgtaaccactctcaaattcatagacagagctatattcacggactgaccatccatgatttcaaaatgatagttttaaccatgttttgaggctatacagtgtttgtttacatttagtttgcttacaaacattggagtacaACAAGCTTATATtatgggttctgatggggtatgaaatttgaactaagctcatgaggcattcatACGTTATATTCGTCAAGAATCAATGGTTATATAGCACAAGtccaaaaattgatgtagcaTCTAAGGATTCTAACTTTAAG

Function

NR:

description
pyroglutamyl-peptidase 1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589800.2 True 1722 mRNA 0.46 5 29981103 29984528

Neighbor

gene id symbol gene type direction distance location
LOC110508900 LOC106599024 coding downstream 3765 29967565 ~ 29977338 (-)
LOC110508897 LOC106599029 coding downstream 20562 29929002 ~ 29960541 (-)
LOC110508894 LOC106599038 coding downstream 97568 29876749 ~ 29883535 (-)
slc25a36a LOC106568938 coding downstream 108919 29821881 ~ 29872184 (-)
LOC110508890 LOC105021148 coding downstream 174369 29682605 ~ 29806734 (-)
LOC110508903 LOC106599022 coding upstream 7065 29991593 ~ 29998944 (-)
LOC110508904 LOC106599012 coding upstream 14926 29999454 ~ 30032487 (-)
LOC110508906 LOC106568950 coding upstream 116113 30100641 ~ 30114984 (-)
LOC110508907 LOC106599005 coding upstream 159507 30144035 ~ 30187260 (-)
mast3a LOC106599001 coding upstream 204357 30188885 ~ 30253370 (-)
G2126894 NA non-coding downstream 1688 29977789 ~ 29979415 (-)
G2126937 NA non-coding downstream 77262 29903521 ~ 29903841 (-)
G2126935 NA non-coding downstream 80709 29900128 ~ 29900394 (-)
G2126918 NA non-coding downstream 144764 29835008 ~ 29836339 (-)
G2126961 NA non-coding upstream 1365 29985893 ~ 29986103 (-)
G2126963 LOC106572245 non-coding upstream 2808 29987336 ~ 29987603 (-)
G2126964 NA non-coding upstream 3278 29987806 ~ 29988218 (-)
G2126966 NA non-coding upstream 4975 29989503 ~ 29991551 (-)
LOC118944842 NA other downstream 857361 29118684 ~ 29123806 (-)
G2125813 NA other downstream 902359 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1095249 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1288633 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1317677 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 416685 30399711 ~ 30401807 (-)
G2127177 NA other upstream 449907 30434435 ~ 30434854 (-)
G2127455 NA other upstream 569061 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 720557 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1259563 31244091 ~ 31244692 (-)

Expression


Co-expression Network