LOC110508902 (LOC106599020)


Basic Information

Item Value
gene id LOC110508902
gene name LOC106599020
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29988640 ~ 29991589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589802.2
TGTACTCAGTGTATAGGCTACTAACCATTCTAAGAATTTTGAGTTGAGTTCTTTGTCAAACATTGGCTTCTAAAAACAGCATGGTTTCCTTATCCCTCTGCAGTATCTCCTTCCTCATTTCTGTTAAAACATACCGGTAATTACTTCCCCAATAAACCACCTCTTAGTTTATTTGCACCAAGCTGTGCAATCTCTATTAGAAATGTGTTTGGATCGGAAGACACAGTATTAAACGACTAATGTCAGCAATTTATGAGGTCAAATGTTTCCATTCAGTGACTGACTGCATACCTATGATTCCTGAGCCCATGTTTTTATGTGCCTTGACTTGCTACAATGTATCCCCAGATGTATCTTAGTCTACTTTGTCATCATATATCCTAAACTGGACAGAACTGTGAGAATGTTTGGAATTGGAACCAAAATAGATCACTTGCAATGAAGAATAGactgacacaatgacacacacgTTTGGGGCTGATAAATTAAAGTTTATACGTGTGTTCATTCACATACAGCTGTCAAGTTGGCGTGGGAACATTGTCTAAGTTCCTCTAAAGACTGGACTAGTCAAGATAGCTGAAGAAACCTTATGTGCCCCTCCCTAGTTCCTTCCCCGCCCAGTTTCTTTTGGCGACCCTGAGCGTTCTATTTTATGACATCAAACCACAATGCACCGCACTGTTTGCAGTTTACCTAAAGTCTCCATGGCAATATGGACTGGTTCGGCCCCTTATTTAAATCAGACCGGAAACGAACGTCATTTTGGGCCAATCTTAGCGCGCTAAAGTGACATAATGGAATTTTTAGGGGTAAAAAACAAGCAGAGGGTTGGGTGTACGCATACCAGTTGTGCCATCTGTGAAAAGAGTTCATACGGGCGAGAAGAACAGGAAAAGCCAAGCCACGACTGTTGTTTTAGCCTCAGGGGTACAGGTAAAGGGGAACCAGAGTTTGAAGATAGGAAAAATACAGGAAACTGTAACCTGAACTGTGTGTTTTATTGCCGGATTTAACGGTTGAATCGCCTTAGTTTATGCGTAAACCTCAACATACCCTCGTGTGAGGGGTTAGAATGGAAACAACCCTCTACCCTTGTAATGTGTTGAATACTCGAGGGATTTCAAGCCTCTATTCCTACAACAGCATGATGAAGAAAGACATTTGTCTAAACCTGGATGACCAAAGCTCGATTCTGAAACCGAATCTCCGGGACGCAGAGGGAATTCTGAACTCCCCGGACTTGGGACTCTTGAAATTGGCGACTCCGGACCTTGAACGATTGATTATCCAATCGAATGGAATGGTTACCACGATCCCAACCTCTCAGTTCCTCTACCCAAAGTCAGCCAGTGACGAACAGGAATTTGCCGAAGGCTTCGTGAAGGCGCTTGAGGATCTTCACAAGCAGAACCAGCTGAGCGAGGGGACGTGCGTACCGCCGGACAGACTGGACCTTATCAGCTCCAACGCAGCCCCAATCGGCTTGCCGTCAGATCTGCCAGTGTACACGACATTGAACGGCTATGGTAATAGTCCACTGGGCAGCACAGTGAATTATTCCACGGATACAATTCCATTCCCACCACCACCTTCTCATCTGATGAGCGCGCATCAACAGGCGGCTGCGGCGGCTCTGTCACGACTCCAGGCGTTGAAGGACGAGCCGCAGACGGTCCCCGACATGCAGTGCTTTGGAGACAGCCCGCCTTTGTCTCCTATTGACATGGACAACCAGGAGCGCATCAAAGCAGAGAGGAAAAAGCTGCGCAACAGAATAGCGGCGTCCAAGTGCCGCAAAAGAAAACTGGAGAGAATATCCCGTCTTGAAGACAAGGTCAAAAACCTTAAGACACAGAACACTGAACTGGCCTCCACAGCCAGTGTGCTTAGAGAGCAAGTAGCCCAGTTGAAACAAAAGGTTATGAACCATGTCAGTAATGGATGTCAACTTCTCCCAAACCAAGATCAAGCTTACTAGAGGACAATGTAGGCCTATGAGGTACCCACCACCATGGGGTTCGTTATCCTTTGGGGATATGGACTAACTGAAACCCAGTAGGCTATTTGCCTGTTCTAATAGAATACAAACTCATTGCTGAAAATCCATTAGAACTGGAACACTATGGGTCTCTCTTAAAAAATGTGGCTAACAGACTAATTTTGCTGCCCTCTTCAGAGGAAAATGCACTATCAGCTCTCCAATGGACAGTAATACATAGCCGAACAAGGATAGCATTATCTGCATGTAAACTGGACAATCTCAATGAGTGCACCTAAACACCAGAATGTCAGTGAGCGCATGTCATCCACTGTGTAATATATAATGCCTTACTTGTTTACAAGCACTTATTTACCAATgacaaatgtatattttatttactAAAACATGTCTTATTTTGCATACTGTCTTTTATATTTTCTGCAAATATGAATTGTGCATGTCTTGTAAGCTCGTGTTGGCTACAGTAATTTAATGTTGTGCAACTCTGTGTATCTGTCGCTATCCATGAATGTAGCCTTCGTTGTTGGCCCTATGTAGCCATTTTGAACGGGATTTGACCTCTCAAAGCTGTTTTATTAAATTCTATGAATTGTTTATTCTGTTGTCAAATGTTGTTGTGGACCGACTGTACTTTATTTCAGTTCCTGTCCTATTACACATTGTGCCAGCTATTTATTATAGCCTCTACCAGCAATGGATTAGTGTAGAATAGGTGCATATTGTTTCCCCCGCTCCCCCTATCATGTTGTATTACAGGCTTTGTTACATTGAAATAAAAAGGGGTAAAATAGGTAGGTAGCAGTGGGAGTCCTACACTATTATGCCACCTATTGGCTTGATGAGGGTAATACCATTGTCAGTTTGGGCCAAGAGGCTACTGTACACCCAACACAAAAATGTGCCTCAAAGACAGATTTGAATAAATGTTGACTCATTTTTCACACA

Function

NR:

description
transcription factor jun-D-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589802.2 True 2950 mRNA 0.43 1 29988640 29991589

Neighbor

gene id symbol gene type direction distance location
LOC110508899 LOC100136537 coding upstream 61087 29924226 ~ 29927553 (+)
LOC118944851 NA coding upstream 67434 29914830 ~ 29921206 (+)
LOC110508896 NA coding upstream 82614 29904340 ~ 29906026 (+)
LOC110508895 LOC106599036 coding upstream 95260 29888003 ~ 29893380 (+)
LOC110508893 marh2 coding upstream 111321 29873489 ~ 29877319 (+)
LOC110508214 LOC106569003 coding downstream 272561 30264150 ~ 30265990 (+)
LOC110508911 LOC106598992 coding downstream 292331 30283920 ~ 30336939 (+)
LOC110508216 NA coding downstream 296665 30288254 ~ 30299223 (+)
LOC110508913 LOC106598990 coding downstream 355819 30347408 ~ 30353668 (+)
LOC110508914 LOC106598989 coding downstream 368596 30360185 ~ 30366667 (+)
G2126318 NA non-coding upstream 2256 29985876 ~ 29986384 (+)
G2126320 NA non-coding upstream 2937 29984759 ~ 29985703 (+)
G2126323 LOC106599023 non-coding upstream 6348 29981032 ~ 29982292 (+)
G2126322 NA non-coding upstream 9214 29977894 ~ 29979426 (+)
G2126339 NA non-coding upstream 32454 29955251 ~ 29956186 (+)
G2126354 LOC106599012 non-coding downstream 14336 30005925 ~ 30007953 (+)
G2126355 LOC106599012 non-coding downstream 17224 30008813 ~ 30009098 (+)
G2126358 NA non-coding downstream 23133 30014722 ~ 30014923 (+)
G2126362 NA non-coding downstream 26820 30018409 ~ 30018646 (+)
G2126366 NA non-coding downstream 30878 30022467 ~ 30022719 (+)
G2125614 LOC106599059 other upstream 665256 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 714189 29270737 ~ 29274454 (+)
LOC110508851 LOC106599130 other upstream 1450228 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2264652 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2879358 27106034 ~ 27109282 (+)
G2126497 NA other downstream 218658 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 543262 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 649098 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1648713 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1747723 31739312 ~ 31740070 (+)

Expression


Co-expression Network