LOC110508903 (LOC106599022)


Basic Information

Item Value
gene id LOC110508903
gene name LOC106599022
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29991593 ~ 29998944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589803.2
AAAGACTGTCAGTCATCCTCTAGCTCTACTCTGAGCCCGCCCCTTCGGTGACAGGCAATCAAGTGACGCCCAAGGTTCTGCAGGTGCGATACTGGGTACTGCTGCAATAGCGCTGCAGATAAAAACAGGCTTTTCACGATGGCTTCCGCAACAGCCACTTATGGACAGAAGGAGTCCTCAGACCAGAACTTTGACTACATGTTCAAGATCCTGATCATTGGCAACAGCAGTGTGGGTAAGACCTCCTTCCTGTTTCGCTATGCAGACGACTCATTCACGCCGGCCTTTGTCAGTACGGTGGGCATCGACTTCAAGGTGAAGACCATCTACAGAAACGACAAGAGGATCAAGCTGCAGATCTGGGACACTGCCGGCCAGGAGCGGTACAGGACCATCACCACAGCCTACTACAGAGGAGCCATGGGCTTCCTGCTCATGTATGACATAACCAACGAGGACTCTTTCAATGCCGTGCAGGACTGGTCCACCCAGATTAAGACGTACTCATGGGACAACGCCCAGGTCCTGCTGGTGGGAAACAAGTGTGACATGGAGGATGAGAGGGTGGTGGCAGCAGACCGGGGCAGGCAGCTCTCTGACCAACTGGgCTTTGAGTACTTTGAGTGCAGTGCCAAGGACAACATCAACGTGAAGCAGACGTTTGAGCGGCTGGTGGACATCATCTGTGAGAAGATGTCGGAGAGCCTGGACAACGCCGACCCCGCCGTCACAGGGGCCAAACAGGGGCCCCAGCTCACCGAGCAGCCCGAACGCCCCCACCAGGACTGTGCTTGCtaaacacaccatacacacacacacacctgacctctCACACACCCCCTTCCTACAACCTTCTCAGCTGGTGGAAGAGGTCTGTGATGGGTTTGTGTTTGGATGGAAAATCCGAAAAAACTCCATTCTGTATTTCAGTCCCCCGTCTATCTATAGGTGTTCTACTGTAAGTCCAAAGTTCACATTCCTCTGACTCCCCTTACTGCGGCCTCGAACCTGAAAGGATTATGACTTTTTTCAAAGGGCCACATTGCTGATTATCTGTTTACTGTTGATAgctttgctgtttttttttattttttatatgtcCCCGATTTGGCTGGTGACAGAACATATTAAGCGACCAAATCCATTGGCGTGAGTGAGGTATTGTCCAAATTTGTGATAACAAAAATTGGATGAGATTGTGTTTTCAAACATTTCCGACCAAAATCCAATGCATATTGGTTATCAGTCATGGTCATTTTCTAATATTTTTTCATTGCGGAATTTAAGAAAAAGAAAACGATGTGTTGAGTACTGTCCTGTccttattgtttttattttttacttttgttcATTTTTCCCCCCCTCGCAAACCTTGATAGAGAGAATATTGATTGATGGATAAAGGTGTCTTAAGTATAAGAGAACAGTATGTATAAATGTTCAGACATGAATGAATATGCATTTTAAAATGTGAAAATATATAAACATAGTAAACAATTACAATATTTATGTATACATATCTGTGCATTGTGAGAGGTGTTAATTTTTTTTTCATGGAACTTCTGTAAACTTATGGGCCACGCCCCTCTGAATCAAACTGGTTTGTTTTAAGAACGTAGCATGTGTGAAGAACAGTTAAATGAAGCTTCTAATTTCTTGTCAGTGTATAACACTGCTTCTCTACAGCACAATTACCTCTTATTCATGTGTACAAGACACACACAGAACGACACTGGGTACAGCACCCTTATACTACATCACGTTCCAATCACTTCCCGGTGTCTGGCAGTCTGTGGTTGGTTTTTTATTTTGCGAGGaggaaatactttttttttaaaaacatgttcAATGTCATGTTTGTGTGATTTTGCTGTTTCAGTGTAGAGAGAATTGCTTGTTGGCATATACATGAGGAAAAAACATAACTAGCTAGAGCCAAACGAAATGCACTCAGGCACATGAAGACATTGTCACGGCCATCTATATTTATACacagtatatttatttattaatgaAGTAGGTTTTTCGTATGTTGTTTGCGGGCTGCACTATCACAGTTTAAAAAAGACGGTTATATCAGTATTGAAAAAAAGATTGGTCCAAAATTGAAATTAAAGTGTTGACATACTCCTCCAGACTGAGACACTTCCATTTCACTGTATGTTCTCCTGATCATGTACGAGGTGTTTCAATGGGAAATACTTATGTCCATGTTTTTAAACCAACCATGAAGCCGTTAGTGTGGGTGTAATAATGTTAGTGTAAATACTGTATTCCTCTCAGAGCAATACTGTGTCAAATTCCAGTCTCCTGGTTCTCCTTGATGGAAAATATTAACAGCCAACAAAGCATGTATTTAACAAATACTGTTTGCTTGAAGGATTTAGGCAGGGTTtgtgctatccgggatccttgggacgtccctgcACTAAACTTTAGCTTAACCCGCACCCTAACCTTTTAACCATAACActtacctaaccatgaacataaccattttaaatgtcaacttcaatgggggggtagggatgtcccaaggatccctcatagcagaccctttAGACAGCTTTGCTTAGGTCTTTCCAAAAATGACACCCGCTAGGACAAGACTTAGACACATTTTTAGGGCTGAACTGAAAGGCCTGTCATATTGTAATAATGATAGAGAAGCATTTGGCATGTATGCCTACACTGTGGCAATTTTCAAAAAGGGAAAAGTGTTGTAAGTAGGATCAGTACTTATCACATCCTATTATTTATACTGCATTGGGTAACTTTAGTTTTGTTGATTGTGTTTCGCTACAGCTGTAAACTTGCCTCTGACTTAGGTATCTGTTCAATTCAGCTAGCTCTCTCTTAGCTCTCCATCCTATCTTCCCCCTGTAAATAATGTTTCTTTCTTGGGTTTTAGTTGGGTTTTAGTCATGTGAATTGTGCTGTAACACTAACTCCAGGTTTGATAAAACAAGGAATtaataaacaaaacataaaaG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07882 RAB3A; Ras-related protein Rab-3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589803.2 True 2993 mRNA 0.42 5 29991593 29998944

Neighbor

gene id symbol gene type direction distance location
LOC110508901 LOC106599023 coding downstream 7065 29981103 ~ 29984528 (-)
LOC110508900 LOC106599024 coding downstream 14255 29967565 ~ 29977338 (-)
LOC110508897 LOC106599029 coding downstream 31052 29929002 ~ 29960541 (-)
LOC110508894 LOC106599038 coding downstream 108058 29876749 ~ 29883535 (-)
slc25a36a LOC106568938 coding downstream 119409 29821881 ~ 29872184 (-)
LOC110508904 LOC106599012 coding upstream 510 29999454 ~ 30032487 (-)
LOC110508906 LOC106568950 coding upstream 101697 30100641 ~ 30114984 (-)
LOC110508907 LOC106599005 coding upstream 145091 30144035 ~ 30187260 (-)
mast3a LOC106599001 coding upstream 189941 30188885 ~ 30253370 (-)
LOC110508910 NA coding upstream 274949 30273893 ~ 30279240 (-)
G2126966 NA non-coding downstream 42 29989503 ~ 29991551 (-)
G2126964 NA non-coding downstream 3375 29987806 ~ 29988218 (-)
G2126963 LOC106572245 non-coding downstream 3990 29987336 ~ 29987603 (-)
G2126961 NA non-coding downstream 5490 29985893 ~ 29986103 (-)
G2126894 NA non-coding downstream 12178 29977789 ~ 29979415 (-)
G2126989 NA non-coding upstream 48865 30047809 ~ 30049693 (-)
G2127025 NA non-coding upstream 127672 30126616 ~ 30126860 (-)
G2127031 NA non-coding upstream 138165 30137109 ~ 30143209 (-)
G2127056 NA non-coding upstream 196186 30195130 ~ 30223590 (-)
LOC118944842 NA other downstream 867851 29118684 ~ 29123806 (-)
G2125813 NA other downstream 912849 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1105739 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1299123 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1328167 28662708 ~ 28663426 (-)
LOC110508917 LOC106598978 other upstream 402269 30399711 ~ 30401807 (-)
G2127177 NA other upstream 435491 30434435 ~ 30434854 (-)
G2127455 NA other upstream 554645 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 706141 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1245147 31244091 ~ 31244692 (-)

Expression


Co-expression Network