LOC110508906 (LOC106568950)


Basic Information

Item Value
gene id LOC110508906
gene name LOC106568950
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30100641 ~ 30114984 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589807.2
GGTCACATGACTGAGAACCAATCGTAAAATCGAAAATATATTTTCTTAGTTAGAGGGTACCGTGATATACTTTGAATCACTAAATATATTTGAGTAGATTTACTGACTGTGGCCAGTGTCTGTCGTCTTGTGCTGAAGGGAAGATGAAGGGTATTATTCTGTTTACACTTTTGACCATCTGGTCAAATGTAGATTGCAAGTCTTGCTCATATTCTCCATCGCAGTGGTGTACCTCTTTGGACTCAGCCATCGAATGTGGGGTTCTGAAGCAGTGCCTGGAAACCAATGCCACCAAGCCCAACACGCTGGAGCAGTCAGTTCAGGTGGAGTTGTATTATGAGAGTCTGTGCCCAGCATGCCGCTACTTCCTCACCTCACAGCTCTTACCCACATGGACCATGCTGCAGGACGCCATGAGTGTCACGCTGGTGCCCTATGGAAATGCAGAAGAATCTTTTGATGGGAAGAAGTATCAGTTCACCTGCCAGCACGGCGAAGAAGAGTGTCTTGGCAACATGATCGAGaccTGCATATTGAATGTGACAGGAAGTAACGCCTTCCAGATAATCTACTGCATGGAGGCCTCCACTGATGTGGTTAAAGCAGGCGAGAAGTGTGTGGAGCTCTATGACCCAACCACCAAGTGGGACAGCATCATGACCTGTGTGAAGGGAGACCAGGGGAATCAGCTAATGCATCAGAATGCAGTGAAGACTGGTGCCCTGAAGCCAACCCACAACTATGTGCCTTGGATTGTCATAAATGGGGAGCACACAGAAGAACTTCAGGACAAAGCAATGTCTTCGCTCTTCGCTCTGGTCTGCAGCATGTACAAGGGGTCCAAGCCTGAGGCCTGTAGTACGGCTCTGATGAAACGACACAGAAGTTACAGTTACCATGACGAGTAAACCATCTACGTCTCAACACTGCGCTATACTGCCATGTGCCTCTGTGTTTGATTGCTAAATATGGATGGTAAATGCCACCTTAAAAATGTGTGGTATCAATAATGTTTTAACGCTAtcaatgtattttaaaaaaaatctggttTAACTATCAATATTACACAATTATTCAAAAATCAAGAAAATGGACGTCATGTACTGTTTCATTGCTCAATGAATGAGCTGTGTGGAATGAGATGTGTGGAATGAGCTGTGTGGAATGAGCTGTGTGGAATGAGATGTGTGGAATGAGCCTTTGTGGAATGAGCTGTGTGGAATGAGCTGTGTGGAATGAGCTGTGTGGAATGAGCTGTGTGGAATAAGCTCTCTGATAGCAATCCATTTTTTATAAAGTGAGGAAGTTTCACTAGCCTTTGTAAATGAATATTGGGGATGTAATGAATACGAAATGAAAGTAAACTACTTTAAAAGGA

Function

NR:

description
gamma-interferon-inducible lysosomal thiol reductase-like

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589807.2 True 1378 mRNA 0.44 7 30100641 30114984

Neighbor

gene id symbol gene type direction distance location
LOC110508904 LOC106599012 coding downstream 68154 29999454 ~ 30032487 (-)
LOC110508903 LOC106599022 coding downstream 101697 29991593 ~ 29998944 (-)
LOC110508901 LOC106599023 coding downstream 116113 29981103 ~ 29984528 (-)
LOC110508900 LOC106599024 coding downstream 123303 29967565 ~ 29977338 (-)
LOC110508897 LOC106599029 coding downstream 140100 29929002 ~ 29960541 (-)
LOC110508907 LOC106599005 coding upstream 29051 30144035 ~ 30187260 (-)
mast3a LOC106599001 coding upstream 73901 30188885 ~ 30253370 (-)
LOC110508910 NA coding upstream 158909 30273893 ~ 30279240 (-)
LOC110508912 NA coding upstream 186103 30301087 ~ 30304412 (-)
LOC110508917 LOC106598978 coding upstream 284727 30399711 ~ 30401807 (-)
G2126989 NA non-coding downstream 50948 30047809 ~ 30049693 (-)
G2126966 NA non-coding downstream 109090 29989503 ~ 29991551 (-)
G2126964 NA non-coding downstream 112423 29987806 ~ 29988218 (-)
G2126963 LOC106572245 non-coding downstream 113038 29987336 ~ 29987603 (-)
G2127025 NA non-coding upstream 11632 30126616 ~ 30126860 (-)
G2127031 NA non-coding upstream 22125 30137109 ~ 30143209 (-)
G2127056 NA non-coding upstream 80146 30195130 ~ 30223590 (-)
G2127102 NA non-coding upstream 189439 30304423 ~ 30304655 (-)
G2127106 NA non-coding upstream 196220 30311204 ~ 30311541 (-)
LOC118944842 NA other downstream 976899 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1021897 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1214787 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1408171 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1437215 28662708 ~ 28663426 (-)
G2127177 NA other upstream 319451 30434435 ~ 30434854 (-)
G2127455 NA other upstream 438605 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 590101 30705085 ~ 30706591 (-)
G2128216 NA other upstream 1129107 31244091 ~ 31244692 (-)

Expression


Co-expression Network