LOC110508910


Basic Information

Item Value
gene id LOC110508910
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30273893 ~ 30279240 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471372.2
ATAGAAAAAAGGGAACTTGGAAGTTCAGTCAACAACTTCATCGTCTCTCACTCATAGACCAACTGGACCACTCTGTTCGTCTCACCAAGGCCTgGTCATGATGTCTAATACAACTTGTCTCTATGCAAACTCTACCACAGACTGCCTAGACCCAGCTTCTTTTGGTTTTTCTGTGAGATATGCTGTGGgtcttcctctgttcttcatAGTTCTGGGAGTAGTGATTGCGCTGATCTATACCAAGCGCAGTAAATTTAGGAATATGTGGCAGTTAGATCAACTCAAGAGCACAGAGGTCAACACACGTCAGCTTGAGGGTTCCCAATACACGGCCATGGTCAGACCACCACCCGCTGATCATAGCCCTATCTACGAGAACTTCACTGACTCCAACAAGACAATCATCAACATGAACAGGTCACCCGTTCAACCTGAGGACGTATATCTGCAGTGTGATTTATCCGATGATGCAATTTACAGCAACGACATGTCCTGTAGCCTGGCCATACTGCCTCCTGACACTGAGGAGGAAGATATTTATATAATGCCAGATGTTCTATAGTTACAGCCATAAAGATGACCCTATTCAAATCCAAACAGTCATATTTTTGTAGGACAGGAAGAGGAATCAAAGGAGCCAATATGTTCTGGTGGTTTTATGTTTTATCCACCTCTGAAGGAAACTTGGCCATATTGACAAAAACAGTTGTCTTAATTAGAATATTTTGCTTTGTTTTACAGACTAAAAAGTATGTTATTATGTTATTGTACATATTTTAGTAAGTGCCTGCTAGGTTCAGCACAGTGCAACAACGTTTTGGGGCAAATTTAAATATAAGTAGCAGTTTAGCccaaaatgtaaaacatttttacagTGAACTTTTTCACTCTGTAGTTAGGGAGAAGTCGAAATTTACCCAATTGTTACCCAGAGGGGCGTGTTGCCTAAAAGATTGGCTGTGCTGTGTACACTGCCACTTCAGGAGGCGAGTCAAAGAATTCTTCCCCCCCATTATGGGgcccattatggggtattgtgtgtaggacaaTGACAAAAAGTCttctccattttaaattcaggctgtaacacaacacaatgtggaaaagtcaaggggtgtgaagactttctgaaggcactgtatagcagTCTTGTTGACAGGTCTCGAGAACGGTCTGGAGCccacatattgagtgtctcgGTGTTGTCTCGGTGTATAATACATTTGgactcggtcttgactcggtctcggacAGTGAGGACTCATAAATAGTTGCCTAGACCAATGGAGTAAAAAAAACTCCTAATTACCAGCTTCCATTCAGTCCAGTGTtgcgattgtgttttttttttgccaaaattAGTCAACTTTAAAAACGATGTTGCgggtgaaaatgtattggtcgCGGGTGCCAGATTTTTGGCGGTACTTCTAAATTGCACCGCGACCGCCATGGCATTTctcttaaaaatatatacatatatttcactgtgacctgctgccTCTGACTATCAGGCAGTGAGCAGGCTGTaactgagtgagtgagtcagtgagtgagcatgtgaatgggggagagggagagggccaaAGGGGTGCGTGTGTGCTTTGAGAGAGTGCTGCAGCAGAGTAAGCTGAGTCACGGAGACAGAGCAGCACCAGTGCACTTTGTGACCACTGTTTACCAgttgtaggtaggctatttaggTTGGTCATTATGGAGGCACACCTTTTCCATAAAACATATATTAACACGCTAGAACCGCAACAAAGCATTGGAAAACGACTTTAGGGGCACTAGAGCTGTTTAGATAAGTTTGCTCAGAGGTGGTTTAAAGTAAACTGCATTCTTTAATGTCAGTTTCATTGTGGACTTTTCCCTGAAATGATATGTTGGCATGTTGGCCTATCATGGGCTATAGACTACCTGCATCTATCTCAGTAAACCATGGCAAAGTTTAATTGCAGTTATAAACCCAGATTTTAGTCAGTAGCCTATGCCTATTGAAATAACAAGTCAATCGACTAAGGGATATGTCCTAAGAACAGTCATTAGTCATGGTAAATTGTACCACACCTCCTTGGGCTTTCTTGCTTAATCATAATCATAATCAAAACAATCGACATCTATTGAGGGAAAATTATCTGGAGAGTTTAATAAGGGAGATTTATCTTTTCTCTTGTGATATATTCTTAAACTcgcaataattattattttgatggAAAAACTAATTGAGCTTTTTCGTCGTAAAAAATAAAGTCAATATTCCTTCTTAATTCAATCGATAACATTATGGAAAAAGTGTTTATTGGATAAATGTGGCAAGTCCTCTTTTGCTGCAAAAAATTATTTGGCCAGGTTTTCCGAGGTCATTGGGCGAGAAATTTTAGCCAGACCTGGCAACCCTGATTCAGTCAGGGCATAAAACCACTTCGCTTGGCCAAATATATACACtcctttctcagaacattaaTATCTTAACATCCTTATCTATTATAGACATGTTTGCACactggtgaacctataggccttcagtgtgtgacaggtttgtgattcagtggtgtagtggagggtatatgcaGGTATAAACccaacacaatctcacactcaatTCATGCAAATATGTACAAATAGAATTTCAGCAGattttgtgtgttattgtgtggctTAATTTGTGTGAAAAGACACACATTTTTGTGTGACTTATTAGAGCAATGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATGGTGTTGGTGCATGATTGTGTTGTTCTACACTGCCTTTTTTTTGTGTCCCACATTTATTAATATAAAAAACAAATGTGTTAACAACCCAATCTTTTTAATCAACCAGGTTGTCACCTAAATAATTGCAATATAATACTagccttgttttttaaatttgttaAATTAATGCCAATGCTGTTTTCTATGCTTGTTTTCACATAATACTTTGGAATACTTGTGCTATGTCGGATTTTATGAGGGTCGCCAAATTGGAGTATAAAGCTTTAtttgtctgtttttgttttgtggtaTCAATGAAGGTATTTGATTGTGTTTTTTCAGTGGCGTACagtatactcacttcttaatccctaCTGATGTGTATcgaagtagtgtagtggaggtatacgaCTTATCAATTATGTAGTACAATAGGGAAACCATGCACAAAGTAGGCTACACAATCGCAAAGCATGTGAAAATGCTCGCCACAAACAACCTAGGTTTCAGCTGAATATCATCTGCAGGCAGCAAGAGTGTGCAGCTCTCAGCTGGTTTTGGcatagagcagctcacagaagaatgacatcGGTAGCCGGTAGGGTAGGAAAAACGTTTCAACTTATGATATCAGCCAGTAAATGCTAACTAGGGCAACAATGGATATGCAAACCATGTATTGAAAAAGTTTAgtccaaagtgttggtcagttgGCTGTTTTTGATGCTCAATTAACATCATGTACTGTTTGCATCAGGGGCGTAGACATGGATGGGCCTGGGTGGAcagaggcccacccactggggagccgggccctgacaggcccacccaatcagattgatgtGGTTTGTGGATGTGGCATTGTTGTGGACACATCAAatatgtgtattttttttataaaaaaaaaagtgatattttgagagtgaaaatctAAATCTATAGGAAAATCTATAGGAAAACTGAAAGGACGAGGAGCCTACAATTCCCCatcttgttgatgtgcataactgagggagagagtctaccttttcatggttgttacATCAATAAGACTGTAAAGTTCCCATTTGTAAGAGAACTTCTGTGGTGTTTACATATTATCAGAAATCCATTCTGGtctattttgtggcttttggggAATgcattctaatgatctaaagtcacgctgttgcaactgcctgtaaacacacagtccagttcaaagtgagtgatggcaggccctactgcctgtaaacacacagtccagttcaaagtgaatgatggcaggcccatgtggcaaatggcttgtttgtataaaggcctactgtagctctgttcGGCTATAGCACACCGGTCTGTGAAGACtccggtcctggacaagacagatgttttATTCTGTTTTATTTACTGTAGTGTAACGGCCACTTTCGCACGGACgttttcccactctatattgctagaGAATTTTCACAAATGGCTTAGTATACGTAATTCCCAAACGttctaaaaaaaatgtaaaaagtggaaatgaccatatctaagcagtggtgtaaagtactaaagtaaaaatactttaatgtaCTACTGAAGTAGTTTCTTTACTttactttgctatttatatttttgacaacttttacttcactacattcctaaagaaaaggttgtactttttactccatacagtttccctgacacccaaaagtacttgttatattttgaatgcttagcaggacagggaaatTGTCCAATtgacgcacttatcaagagaacatccctggtcttcaCAACTACCTGATCTGgcggattcactaaacacaaatgctttgtttgtaaattatgtctgttggagtgtgcccctggctatctgtcaataAAAAACAAGAGAATTG

Function

NR:

description
PREDICTED: protein GAPT-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471372.2 True 4664 mRNA 0.40 3 30273893 30279240

Neighbor

gene id symbol gene type direction distance location
mast3a LOC106599001 coding downstream 20523 30188885 ~ 30253370 (-)
LOC110508907 LOC106599005 coding downstream 86633 30144035 ~ 30187260 (-)
LOC110508906 LOC106568950 coding downstream 158909 30100641 ~ 30114984 (-)
LOC110508904 LOC106599012 coding downstream 241406 29999454 ~ 30032487 (-)
LOC110508903 LOC106599022 coding downstream 274949 29991593 ~ 29998944 (-)
LOC110508912 NA coding upstream 21847 30301087 ~ 30304412 (-)
LOC110508917 LOC106598978 coding upstream 120471 30399711 ~ 30401807 (-)
angptl4 angl4 coding upstream 130031 30409271 ~ 30416644 (-)
LOC110508919 NA coding upstream 162773 30442013 ~ 30447448 (-)
LOC110508217 LOC106598972 coding upstream 350702 30629942 ~ 30649835 (-)
G2127056 NA non-coding downstream 50303 30195130 ~ 30223590 (-)
G2127031 NA non-coding downstream 130684 30137109 ~ 30143209 (-)
G2127025 NA non-coding downstream 147033 30126616 ~ 30126860 (-)
G2126989 NA non-coding downstream 224200 30047809 ~ 30049693 (-)
G2127102 NA non-coding upstream 25183 30304423 ~ 30304655 (-)
G2127106 NA non-coding upstream 31964 30311204 ~ 30311541 (-)
G2127108 NA non-coding upstream 32900 30312140 ~ 30312388 (-)
G2127109 NA non-coding upstream 34237 30313477 ~ 30313708 (-)
G2127116 NA non-coding upstream 44158 30323398 ~ 30325462 (-)
LOC118944842 NA other downstream 1150151 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1195149 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1388039 28885468 ~ 28885854 (-)
G2125290 NA other downstream 1581423 28692139 ~ 28692470 (-)
G2125270 agla other downstream 1610467 28662708 ~ 28663426 (-)
G2127177 NA other upstream 155195 30434435 ~ 30434854 (-)
G2127455 NA other upstream 274349 30553589 ~ 30555187 (-)
LOC110508928 mrpl34 other upstream 425845 30705085 ~ 30706591 (-)
G2128216 NA other upstream 964851 31244091 ~ 31244692 (-)

Expression


Co-expression Network