LOC110508911 (LOC106598992)


Basic Information

Item Value
gene id LOC110508911
gene name LOC106598992
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30283920 ~ 30336939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966686.1
CGCGGGCGTTCCAGATGTGCGCCTTAACTACGCCCACGCGCAAGGACGTGGGCACGCAACGTCTCTGGAGGGAGAGCGGAGCAGAAGAGCGAAACATGGCGACATCGAATAATCCGCGGAAATTTAGCGAGAAAATCGCTTTGCATAATCAGAAACAGGCAGAAGAGACAGCAGCATTCGAGGAAGTAATGAAAGATTTGAGTATTACTCGAGCAGCGAGGGTAAGCTTACAGAAGACCCAGTATTTACAGTTGGGACAAAACCGTGGGCAGTATTATGGCGGATCATTGCCAAATGTCAATCAGATTGGAAATGGCACCATTGACATGCCTTTTCAGACTCCCTTTCAAGGTTCAGGTGACACCAGCAGGACAACACGGCATCATGGATTGGTTGACAGAGTTTACCGGGACAGAAACCGCATCACATCCCCACACGGAAGGCCCCTCGACAAACATGGACGCCAAATTGATAGCTGTCCGTATGGCTCGGTGTATCTGTCACCCCCACCCGACACCAGCTGGAGGAGGACAAACTCGGACTCTGCATTGCATCAGAGCACTTTGAACccacaggatatttttgcagGAGGCTCACAGGACTTGCAGCTTAAACGAGTGCTTCTGCTTCATGTACCAGGGCCAGAAGACACAGAATCAGATATGGACAAAGACGAACAAAAACAGAACTGGGATGGCAAAAAGAATGTCTCATCAAGGTCCAAGGTCCCAGGAATCAAcaTATTCCCGTCTCCAGATCAGGAGCTGACTGTGTCACTGATGCCTTCAGCCCAAAACACGGGCGGCGGCTCCCTGCCTGATCTGACCAACATCCAGTTCCCCCCTCCGCTGCCCACCCCCCTGGACCCCGAGGACTCTACCCTCAGCGCCTACAATAGCACGGGAAACCTGGCCACCAGCCACTCATACAGCTTCAGTTCCACCAGCCAAGGACAGACCACAGCCCAGCAGGGCAGGCAGGACAACAACATGGTCAACCAGGACTCCCAACAGCACCAGTCCCTACAGCTCTCCCCCACCCTGTCGCCACCCCTCACCCTCGCCCAGGCGGAGACCATAGACACCATGACACTGGAGGCACAGTTGTCCCAGTACACGTTCTTCAGCCAGCCCtcttctcaacaacaacaacagcagcagcagatcACTCAAGGACTGACCAGGCTGGTCCAGCTACCCTCCCCTCTGAACACCTCTTCCAGCCAGACACAGAACTCCATGGATATGAACTCGCACCACTCCATATTGGGTAGTGTATTTGCTGACTTCTATGACCAGCAACTCACATCCAGACAGACCAGTGCTCTCTCCCAACAGCTGGAGCAGTTCAACATGACAGACAACAACAGTCTGTACGGCCAGGGCTCCACCCTCGACTACTCCCAAGCAGCCATGATAGGTTTGATGGGTAGCCACGGCAACCTGCAAGACTCCCAGCAGCTGGGCTACAGTAGCCATGGCAACATCCCCAACATCATTCTCACAGCCACCGGAGAGTCACCACCCAGACTGTCGAAGGGGTTGTCTTACAGCTCTCTGTCTGCTGACATCAGCTTCGACGCGGACTCTCAGTTTCCCTTGGATGAGCTGAAGATCGACCCTCTGACCCTGGATGGGCTGTACATGCTCAACGATCCTGACATGGTCCTCACTGACCCCGCCACGGAAGACGCCTTTCGGATGGACCGGCTTTAGAACCGCTGCCAAGTTGACTGACTGTCTCGGAGGAACCCGGCCTGAGGGGAGAGGGATATTTTGGGAGTGTGGTAGCTCGTGGCTAGGCCCCAGCTGTGCAGTGTATTCATCCCACACTCCCACCTCCCTTCACCAGCCACCCCTTTCTAAGAGCCATGGTAAGATGAGCTAGTAGGGAAATGGTCGACAGAGTATGCTTTCTCCCTTCCTGATGGAAAAGATGGAAGGGCGACATTGTCATGTTTGGTGGATATTGCGCTTAAGGTTCTGCCTGTGACCAGTCTGTGCTAACCACATACATCCCTtaacttgtttatttatttattttattgtatgCCTCCTGCCAGCCTTTCTGTTGGATGCTTTGGTTTTTGTAAAGGAAAACAAAATAGGATACAAACTACATTGGTCTTGACTTCCATTTGAAGACATTCAATTGATTTAAAATCATGTCTGCAGTGGAAACTGCTTATCGTTCTCTCACCTGCCATACTAGATTAGCATGTCTCATTATCACCCATCTGCTTTTTCACAACCGCCCCTCTATTGGCTAATCTTGCCAGTCTCACATTTTCATCAGTGCACTTAATTTAACCGCGCTGTCATTAATTCACActatacggtgccttcagaaagaattcacacctctttactttttccacattttgttctgttgCGAGATGGgattaaaatgtcattttttgTCAATGATATACACCAAAtgctctaatgtcaaagtggaagaaaaattctaacatttttttaaaaactttatggAAAATGAAACACTATCTTGATTAGATtaatattcaaccccctgagtcaatacaggttagaatcacctttggcagcgattacagctgtgagtttttctgggtaagtctatgcgatttgcacacctggattgtacaatatttgcccattattcttgaAAAAAGTATTCATATTCTGTCAAGTTGGGTGTTGATCATTGCtatacagccattttcaagtcttgccgtagattttcaagccaatttcaAGTAAAAACTATAACTAAGCCATTCTATGTCATCattgtaagcaactccagtgtatatggccttgtgtttcaggttattgtcctgctgaaagctgAATTTGTCtgccagtgtctgttggaaagcagactgaaccaagttttcatcaaggattttgc

Function

NR:

description
CREB-regulated transcription coactivator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966686.1 True 2892 mRNA 0.49 13 30283920 30336939

Neighbor

gene id symbol gene type direction distance location
LOC110508214 LOC106569003 coding upstream 17930 30264150 ~ 30265990 (+)
LOC110508902 LOC106599020 coding upstream 292331 29988640 ~ 29991589 (+)
LOC110508899 LOC100136537 coding upstream 356367 29924226 ~ 29927553 (+)
LOC118944851 NA coding upstream 362714 29914830 ~ 29921206 (+)
LOC110508896 NA coding upstream 377894 29904340 ~ 29906026 (+)
LOC110508913 LOC106598990 coding downstream 10469 30347408 ~ 30353668 (+)
LOC110508914 LOC106598989 coding downstream 23246 30360185 ~ 30366667 (+)
rs15 rig coding downstream 31435 30368374 ~ 30374247 (+)
LOC118944906 NA coding downstream 34183 30371122 ~ 30371254 (+)
LOC110508915 LOC106598984 coding downstream 37932 30374871 ~ 30395912 (+)
G2126538 NA non-coding upstream 28221 30255491 ~ 30255699 (+)
G2126510 NA non-coding upstream 47427 30228870 ~ 30236493 (+)
G2126499 NA non-coding upstream 69767 30213099 ~ 30214153 (+)
G2126474 NA non-coding upstream 81236 30184184 ~ 30202684 (+)
G2126585 NA non-coding downstream 63755 30400694 ~ 30410652 (+)
G2126610 NA non-coding downstream 103112 30440051 ~ 30441047 (+)
G2126608 NA non-coding downstream 105077 30442016 ~ 30447464 (+)
G2126629 NA non-coding downstream 142920 30479859 ~ 30484962 (+)
G2126641 NA non-coding downstream 165803 30502742 ~ 30502949 (+)
G2126497 NA other upstream 72287 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 960536 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1009469 29270737 ~ 29274454 (+)
LOC110508851 LOC106599130 other upstream 1745508 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2559932 27720549 ~ 27725061 (+)
kcnn1a LOC106598974 other downstream 197912 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 303748 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1303363 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1402373 31739312 ~ 31740070 (+)
G2128614 NA other downstream 1608225 31945164 ~ 31948898 (+)

Expression


Co-expression Network