LOC110508919


Basic Information

Item Value
gene id LOC110508919
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30442013 ~ 30447448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589831.2
ATGAATGAACCAGTTTACCGGAACTGGAAATGTACACTTATTTTACATAGGCGATGTTTTTAATTCAGGGAGATTTGTTTTTAAAAGCAGGTCAGGtacaatataaataaaatataaagtgTGTCGATTTATTAAGAGGTTAAAATATTTTGTATCACAGCTTGAATATATACTGTACTGCGCAACACGTGACTTCCTTTCCGGTCTAACCTGACAATATGGATGCCAGCCGCGTGCAGCCGATCAAGCTTGCTAGAGTCACCAAGGTGCTCGGGAGAACGGGTTCCCAGGGACAGTGTACCCAGGTCCGTGTGGAGTTCATGGATGACAGCAACCGGTCCATCATCAGGAATGTGAAGGGGCCAGTCAGAGAAGGCGATGTGTTGACACTTCTGGAGTCTGAAAGGGAAGCCAGGAGGCTACGATAGTGCCCGGGGATGATGAGATGCCAAACGAAAGCCTGTGGAGATGACACCCCATCAGTACACCTGAAAATGGCCCCACGTCTCACTTGTGCAAAGTTAATGAAATAAAATGTTGTTCAAGGTGAA
>TU2432069
CCTTTCCGGTCTAACCTGACAATATGGATGCCAGCCGCGTGCAGCCGATCAAGCTTGCTAGAGTCACCAAGGTGCTCGGGAGAACGGGTTCCCAGGGACAGTGTACCCAGGTCCGTGTGGAGTTCATGGATGACAGCAACCGGTCCATCATCAGGAATGTGAAGGGGCCAGTCAGAGAAGGCGATGTGTTGACACTTCTGGAGTCTGAAAGGGAAGCCAGGAGGCTACGATAGTGCCCGGGGATGATGAGATGCCAAACGAAAGCCTGTGGAGATGACACCCCATCAGTACACCTGAAAATGGCCCCACGTCTCACTTGTGCAAAGTTAATGAAATAAAATGTTGTTCAAGGTGAA
>TU2432070
CCTTTCCGGTCTAACCTGACAATATGGATGCCAGCCGCGTGCAGCCGATCAAGCTTGCTAGAGTCACCAAGGTGCTCGGGAGAACGGGTTCCCAGGGACAGTGTACCCAGGTCCGTGTGGAGTTCATGGATGACAGCAACCGGTCCATCATCAGGAATGTGAAGGGGCCAGTCAGAGAAGGCGATGTGTTGACACTTCTGGAGTCTGAAAGGGAAGCCAGGAGGCTACGATAGGTGTGTAATGTTGTTCATACAAAGCTGGAGCAGGCA

Function

NR:

description
PREDICTED: 40S ribosomal protein S28 isoform X2

GO:

id name namespace
GO:0006407 rRNA export from nucleus biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589831.2 False 551 mRNA 0.45 4 30442013 30447448
TU2432069 False 356 lncRNA 0.53 4 30442013 30447253
TU2432070 True 269 lncRNA 0.54 3 30442997 30447253

Neighbor

gene id symbol gene type direction distance location
angptl4 angl4 coding downstream 25369 30409271 ~ 30416644 (-)
LOC110508917 LOC106598978 coding downstream 40475 30399711 ~ 30401807 (-)
LOC110508912 NA coding downstream 137601 30301087 ~ 30304412 (-)
LOC110508910 NA coding downstream 162773 30273893 ~ 30279240 (-)
mast3a LOC106599001 coding downstream 188643 30188885 ~ 30253370 (-)
LOC110508217 LOC106598972 coding upstream 182494 30629942 ~ 30649835 (-)
LOC110508927 LOC106598960 coding upstream 253094 30700542 ~ 30704777 (-)
LOC110508928 mrpl34 coding upstream 257637 30705085 ~ 30706591 (-)
ptger4c LOC106599187 coding upstream 458431 30905879 ~ 30907975 (-)
LOC110508937 NA coding upstream 531271 30978719 ~ 30980452 (-)
G2127133 NA non-coding downstream 1015 30440277 ~ 30440998 (-)
G2127172 NA non-coding downstream 12131 30429657 ~ 30429882 (-)
G2127171 NA non-coding downstream 12423 30428922 ~ 30429590 (-)
G2127168 NA non-coding downstream 18935 30422869 ~ 30423078 (-)
G2127124 NA non-coding downstream 110324 30331386 ~ 30331689 (-)
G2127212 NA non-coding upstream 36283 30483731 ~ 30484449 (-)
G2127220 NA non-coding upstream 55294 30502742 ~ 30502998 (-)
G2127222 NA non-coding upstream 62245 30509693 ~ 30509929 (-)
G2127226 NA non-coding upstream 63282 30510730 ~ 30511163 (-)
G2127470 NA non-coding upstream 133557 30581005 ~ 30583262 (-)
G2127177 NA other downstream 7159 30434435 ~ 30434854 (-)
LOC118944842 NA other downstream 1318271 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1363269 29078039 ~ 29078744 (-)
G2125723 NA other downstream 1556159 28885468 ~ 28885854 (-)
G2127455 NA other upstream 106141 30553589 ~ 30555187 (-)
G2128216 NA other upstream 796643 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 871835 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 1264160 31708667 ~ 31761665 (-)

Expression


Co-expression Network