si:rp71-39b20.4 (LOC106598976)


Basic Information

Item Value
gene id si:rp71-39b20.4
gene name LOC106598976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30461480 ~ 30466241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021588707.2
ATGGAACAACCTTCAAAAAACCCTCATCACCTAAAAAAGCTGAAAAAACGGCGCTCCAGTTTGTTTGCCAGCGTGAAGCTGAACACCAGCTTATCCAAGAGCATTGAAGAACCAGACGCTACCTTCCCCTTTGCACAGGAGAGCTCTGTGAAAGCATGGACGTCCATGGACAACCTGGACAACCCTGCTACTCAGACAGTGGTCCTGAAGGAGAACGGGCCCGAGAAGAAAAGGGAGGAGAAAGAAAAACGTGTCGCCAGACAATCCAACATAGTCACCATCAATGTCGGTGGGAGAGTCTTTCACATACCTATCCATCTGGTTCTCCGCTACCCCAAAACCAGGATTGGCTCTCTGGCCCTCTGTACCGATCCTGTGAAGAGGATGACACTCTGCGACGACTACTCCGTCCGTAAAAATGAGTTCTTCTTTGACCGGGACCCCACTTTTTTCCACTACATCTTCCACTTTTACTGCAGCAACGTCATGTGGGTGATGGAGAGTCTGTGTCCGCTCAATTTCGAGGAGGAGATGAACTTCTGGGGTCTCCGCATGAGGGACACTCCGAGGTGTTGCCGCATGCTGTTTGAGGAGAAGGTGGATGAGATCAAAGATGGCCTGAAGGTCAACCAGGAGCTGATCGACGAAATCAAGCCGGCCCACAGGGATGAGGAGGCCATGTTCAAGACCATGTTCCTGGGAGGGTTCCGCAAGGCCCTCTGGGACCTGATGGAGAACCCCTACTCCTCTTTAGCGGCCAAGGGCTTTGCCGTGTTCTCCAGCCTCTTCGTCCTCATTTCCATCGTGGCCATGACCCTCAACACGGTGAAGGAGCTGAGGAAGTACACTATCTACGGCAAGACCTACATGGAGTGTGTGGAGATCGTCTCCATCGTCTTCTTCACCTTTGAGTACTTCCTGCGGCTACTAACCACCTGCGACATCAAACACTTTGTGAAAAGCGGTCTCAACTTTGTGGACCTGTTGGCCGTCATGCCCTACTTCATCCAGATCATCTTTGAGATTTTCACAGATGTTGATGATGCTGGTGCCCAGGAGGACCTGAAGACCATGGCCAGGGTCAGCAAAGTCAGCAAGGTGCTCAAGGTGGTCAAACTCATGCGCATCTTTCGCATCCTCAAGCTGGCAAAGCATTCCACTGGAATGCGGGCGTTTGGCTTCACCATCCGGCAGTGCAGAGAGCAGGTGTGCTGCTTATTCCTGTTCATTATCATGGGCATCTTCACCTTCTCGGCCCTCATGCACTCTGTGGAGCTGGACCAGCCAGGCACCCCTTTCAGCAGCATCCCTGATGCCTGGTGGTGGGCCGCAGTGAGCATCTCCACTGTGGGCTATGGTGACGTGGTGCCCATCTCCTATCTGGGTCGCTGCGTGGCATTTGGCTGCATCTCCTTTGGCATTATCCTCAACGGCATGCCCATCTCAATCCTCTTCAACAAGTTCTCAGACTACTACGCCAAGCTCAAGGCCCAGGAATACACCCAGACTATAGGCCCGGGTGTACGCACCTTCCAGCTCAAGAAACGTCTGCGGCGCAAGTTCGATGGCTGCTTCGAACCACAGCCTTCGGACGACTCTGATGACGATTATGACACCACATACCATCCAAACAGGAGTCAGAGCCATGCGGGCGCCGAGTGAGACCCTAATGCCAACGCCCCTTAAATGCCTTTCTCGCCTTCATGCTGGAGACTAACACCCCATCTGCCTCTGACTATATTCTAAGCCGGG

Function

NR:

description
potassium voltage-gated channel subfamily V member 2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021588707.2 True 1752 mRNA 0.53 2 30461480 30466241
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508915 LOC106598984 coding upstream 65568 30374871 ~ 30395912 (+)
rs15 rig coding upstream 87233 30368374 ~ 30374247 (+)
LOC118944906 NA coding upstream 90226 30371122 ~ 30371254 (+)
LOC110508914 LOC106598989 coding upstream 94813 30360185 ~ 30366667 (+)
LOC110508913 LOC106598990 coding upstream 107812 30347408 ~ 30353668 (+)
kcnn1a LOC106598974 coding downstream 68097 30534338 ~ 30592397 (+)
LOC110508922 ocel1 coding downstream 129688 30595929 ~ 30608022 (+)
zgc:154006 LOC106598968 coding downstream 142046 30608287 ~ 30629821 (+)
LOC110508925 LOC106598970 coding downstream 192241 30658482 ~ 30666503 (+)
LOC110508926 tm16h coding downstream 213403 30679644 ~ 30700351 (+)
G2126608 NA non-coding upstream 14016 30442016 ~ 30447464 (+)
G2126610 NA non-coding upstream 20433 30440051 ~ 30441047 (+)
G2126585 NA non-coding upstream 50828 30400694 ~ 30410652 (+)
G2126561 NA non-coding upstream 148333 30312829 ~ 30313147 (+)
G2126559 NA non-coding upstream 151108 30310086 ~ 30310372 (+)
G2126629 NA non-coding downstream 13618 30479859 ~ 30484962 (+)
G2126641 NA non-coding downstream 36501 30502742 ~ 30502949 (+)
G2127223 NA non-coding downstream 44176 30510417 ~ 30510790 (+)
G2127225 NA non-coding downstream 45597 30511838 ~ 30512079 (+)
G2127233 NA non-coding downstream 51299 30517540 ~ 30517877 (+)
G2126497 NA other upstream 249847 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 1138096 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1187029 29270737 ~ 29274454 (+)
LOC110508851 LOC106599130 other upstream 1923068 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2737492 27720549 ~ 27725061 (+)
G2127299 LOC106598972 other downstream 174446 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1174061 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1273071 31739312 ~ 31740070 (+)
G2128614 NA other downstream 1478923 31945164 ~ 31948898 (+)

Expression

si:rp71-39b20.4(LOC106598976) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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si:rp71-39b20.4(LOC106598976) Expression in each Bioproject

Bar chart with 16 bars.
si:rp71-39b20.4(LOC106598976) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network