LOC110508928 (mrpl34)


Basic Information

Item Value
gene id LOC110508928
gene name mrpl34
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30705085 ~ 30706591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589843.2
CTTCGATTGGATGAAAAACGAGAGCCAATCGTAGCTCTGAATGGAACGAGGGTGCTTAGCAAATACCCCAGTGGCCTAGCTAGCTATCCTAGTCAGCGATAAAGCCGTCTAAAATATTGTCTAAAATGAATATTATCAGGTCGTCATTTTTCCGGTTTCATGGAGTGATATGCTTCACCAGGATTGTTGCACCACAGCTTCCAGCATCCAGTGGCCACCAGCCACGAGCACTGAGTGGTTGGGTGCTGTCCCGGGCCAGTTTACCTCCCCAGACCTCTCGGTGTGGACCTCTCACATCACAGGCAGAGGGGGCAGGGGTGTTTCAGCAACTCCCCTGGTACCACCAGCAGATTCGCACAGGGAAGCGGGGCACAGAGTATCAGCCCAAGAATATAAAGCGTAAGAGGACCCATGGCTGGATCAAGAGGATCAGCACTCAGGGTGGCATCGAGGTGATTCTCCGAAGAATGCTGAAAGGGCGAAAATCCCTGTCACACTAAGCACCCAATGGACAAACGTTTTTTGGTGAACTTATTGAAGTACCCAGGTTTTGCCACCACTGTTGAGAAAAAGCATAACAACTTCAAGACTTACTGGCCCAGTTGTGTGTAGAACTGAATGTCAGTTATTGGATATGCGAAGGCAGATGTTTGtccatgtaaatatatatatatattttacacacTTTGACAAATGTTTTCCCATCATGTATTTCAGCAACTATCTTGTAGAGGCTTAGAAGTAGTTCAGAGCCTTGCTGTTGCAATCAGTGAATTTGAAATGGCTTATGACCTTGTTAATTCATGCAGGATGAAAGTTGTGATAAAAGACCCAAAGTTGTACATGTCAACATACAGTGGTAGGGTTGAACTAGGTCCAGAATTTGAATATTGTACTTTAATAAATAGGTGCTGGGTTATAAGCATCTGTGCTATTCAGTTGCTGCTATAGATATAGATAGACCTTCTGACCTTCATCAATTTTAAAGCTAATACACGTGTCATTCAAGTCTTTGTCTTGCTCAAATAAAAGCTGTCTTGAGTTTCTGAATAAATAAACTTTGTAAAGTTG
>TU2432521
CGAGGGTGCTTAGCAAATACCCCAGTGGCCTAGCTAGCTATCCTAGTCAGCGATAAAGCCGTCTAAAATATTGTCTAAAATGAATATTATCAGGTCGTCATTTTTCCGGTTTCATGGAGTGATATGCTTCACCAGGATTGTTGCACCACAGCTTCCAGCATCCAGTGGCCACCAGCCACGAGCACTGAGTGGTTGGGTGCTGTCCCGGGCCAGTTTACCTCCCCAGACCTCTCGGTGTGGACCTCTCACATCACAGGCAGAGGGGGCAGGGGTGTTTCAGCAACTCCCCTGGTACCACCAGCAGATTCGCACAGGGAAGCGGGGCACAGAGTATCAGCCCAAGAATATAAAGCGTAAGAGGACCCATGGCTGGATCAAGAGGATCAGCACTCAGGGTGGCATCGAGGTGATTCTCCGAAGAATGCTGAAAGGGCGAAAATCCCTGTCACACTAAGCACCCAATGGACAAACGTTTTTTGGTGAACTTATTGAAGTACCCAGGTTTTGCCACCACTGTTGAGAAAAAGCATAACAACTTCAAGACTTACTGGCCCAGTTGTGTGTAGAACTGAATGTCAGTTATTGGATATGCGAAGGCAGATGTTTGtccatgtaaatatatatatatattttacacacTTTGACAAATGTTTTCCCATCATGTATTTCAGCAACTATCTTGTAGAGGCTTAGAAGTAGTTCAGAGCCTTGCTGTTGCAATCAGTGAATTTGAAATGGCTTATGACCTTGTTAATTCATGCAGGATGAAAGTTGTGATAAAAGACCCAAAGTTGTACATGTCAACATACAGTGGTAGGGTTGAACTAGGTCCAGAATTTGAATATTGTACTTTAATAAATAGGTGCTGGGTTATAAGCATCTGTGCTATTCAGTTGCTGCTATAGATATAGATAGACCTTCTGACCTTCATCAATTTTAAAGCTAATACACGTGTCATTCAAGTCTTTGTCTTGCTCAAATAAAAGCTGTCTTGAGTTTCTGAATAAATAAACTTTGTAAAGTTG

Function

symbol description
mrpl34 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL34 (mitochondrial ribosomal protein L34).

NR:

description
probable 54S ribosomal protein L34, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589843.2 False 1071 mRNA 0.43 2 30705085 30706591
TU2432521 True 1025 TUCP 0.43 2 30705085 30706545

Neighbor

gene id symbol gene type direction distance location
LOC110508927 LOC106598960 coding downstream 308 30700542 ~ 30704777 (-)
LOC110508217 LOC106598972 coding downstream 55250 30629942 ~ 30649835 (-)
LOC110508919 NA coding downstream 257637 30442013 ~ 30447448 (-)
angptl4 angl4 coding downstream 288441 30409271 ~ 30416644 (-)
LOC110508917 LOC106598978 coding downstream 303547 30399711 ~ 30401807 (-)
ptger4c LOC106599187 coding upstream 199288 30905879 ~ 30907975 (-)
LOC110508937 NA coding upstream 272128 30978719 ~ 30980452 (-)
LOC110508938 LOC106598935 coding upstream 288504 30995095 ~ 31004289 (-)
LOC110508940 gbg12 coding upstream 377724 31084315 ~ 31136167 (-)
LOC110508941 gp177 coding upstream 431495 31138086 ~ 31169294 (-)
G2127510 NA non-coding downstream 33894 30670828 ~ 30671191 (-)
G2127508 NA non-coding downstream 35952 30668813 ~ 30669133 (-)
G2127507 NA non-coding downstream 37096 30667723 ~ 30667989 (-)
G2127503 LOC106598970 non-coding downstream 43345 30658507 ~ 30661740 (-)
G2127542 NA non-coding upstream 17541 30724132 ~ 30724541 (-)
G2127557 LOC105030512 non-coding upstream 42357 30748948 ~ 30756441 (-)
G2127570 NA non-coding upstream 82443 30789034 ~ 30804432 (-)
G2127584 NA non-coding upstream 107642 30814233 ~ 30814734 (-)
G2127609 NA non-coding upstream 167828 30874419 ~ 30875011 (-)
G2127455 NA other downstream 149898 30553589 ~ 30555187 (-)
G2127177 NA other downstream 270231 30434435 ~ 30434854 (-)
LOC118944842 NA other downstream 1581343 29118684 ~ 29123806 (-)
G2125813 NA other downstream 1626341 29078039 ~ 29078744 (-)
G2128216 NA other upstream 537500 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 612692 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 1005017 31708667 ~ 31761665 (-)
G2128568 NA other upstream 1176124 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 1316467 32023057 ~ 32029225 (-)

Expression


Co-expression Network