LOC110508934 (LOC106598943)


Basic Information

Item Value
gene id LOC110508934
gene name LOC106598943
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30883060 ~ 30902488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589857.2
ACTGAAAGGATTTGGTGGAGAGCAGAACAGAAAGGCTTGGCCGCATAGAGGGAGGCGCCTTTAGTGCTCTCCTGAAACCAAAGCCTTTGAAGATTTTTTTTCTTAAACTTCAAGCAAAgaggacataacctgaaaagttGGACGCATGAGAATGATGTACCTTTAAAGAACATCGTTGTGTGAATTTTCACCGCCAAGCCATGCTCCACAGCCGACGAGGGGCTTGCTGGGGAAAAGTGTCTGACCTCACTGGCGCGCACGCAGATTGGACTAAAACGCATTGGATTGCAGGTGGGCCAAgatggaggacgaggaggagagacagaccaggggtGACCACCAGACCATCAGCAGGTGCACCTTACCACCTGAGGAATGTGAAGGTGctgctgtatgtggttgtctctCTGCTGCCCCTGGTGGAGGGGGCCTGTATGGGCGCTGGTTTGGAGGCAGACTCTGTACAGGCTGTGGGACtggtgggagggatgggggaaaggcAGCTCCCAGACACTCTACCTGAGGTGGATGAGGAACAAGAGGAGAAGAGTGACCCGTACTCCCCCTGGCATGGCCTCTATGacctctctGTGATGGACGAAGTGGACGACCACCCTAGTGGCCGGTGGGGGAGACGTTCCCCTCGCAACTCCGACGCCGAACCAAAAGGCTCGGCCAAgaaaaagaagaggaggaagaagaaagagagggatagaaagggcAAAGGGAAGGGCCGGCAGCCCCAGCAGAGCAGCCCAGACTGCAGGGTGGAGAAACGAGAGATGCGGGTGCGGGATTTGGGCCTGGGCTTCGACTCGGACGAGATCGTCCTATTCAAGTTTTGCGTGGGCTCCTGCCAGTCGTCAAGGACCAACTACGACCTGGCTCTAAGGGCCCTGATGGAGGACGGGTCCCTGCCGCGGAGGACCTCCCGGCGAGTCAGCGCCCACCCCTGCTGCCGGCCCGACAGCTACGAGCCCGTGTCCTTCATGGATGCCCACACCGCGTGGCAGACCATCCAGTCGCTGTCGGCGGCCAGCTGCATGTGTATGGGCTGAGGGAGCCAGCCTGGAGGAGGGAGAATAGGAGGGGGTGGCGACTGGCTGTCACTCACCCCTGCCTGAGAATATACAGATGGTGGCTCGCCGTTGAGGCTGGGTCTAGGGAGAGCCTCTGGGTTCTGGAAGGGCAGAAGTGGTCGCTCCGAAACATATGCAGCGGGGCTGGTCCCCAGTACAAAGCAGAATGGAGATTCTGTAGTGTCTATGATGGTGGAGCGAGGCCACACCTCTTCCCGTTGTCAATCTCCTGTTGAGGATAAGTGGATTTGTTGGCAATGGGAAACTGTCACGAGTGAATGCCAAGACGGTGACCAcacaatggtgggatttgaataTTCACAGCAGTTGGGATATGTATAGGACTGACCTGGGGTACTGCTGAAAATATTGACTAAAAGAGGACCACATCTCATTGCATTTGACCACAGGTCGACAAGCTCAAAACACTTTTGACAAtgtcaacatacagtatgttaattCCTTCAAAACAGAGATCTTCCATACTATAATTGCATTTTTCAGTGTTGACTTGAACTCTACCAAATGGATGCCATGCATCTCTTTGAATTACTGTATTATAACCAACATATTTATCACAAataagttatttatttattattgtttCATATGAGATGGACTGTAGATTTATATTTATTGTCATGATCACATATCCTGTGGGTTGTGTTGCTGGGTCCTTTGTCATTGAATTGTGTGGGATGTTGTTTTGAAACATCAAAAATATCAGAAGAAGTGGCAAGAACCTCAACCAGGGTTGGGggtgtaacggattacatgtagcGGATTACATTTAGCGGATTACATTTAGCggattacattttttataaactgtaatccgttacgttaacagcaaaaatattgttatcagattacagatacttttgaaaaaactAAATGATTACCTCTAGGATTACTTTTACCCCATTCACGCCCTTGTACTATATTTAGTACAATATCAAAATGCACCACTGAACTAATTCTGTTTGGTGTAAATGCATGAAATGTGGTGTCAACATAGTTACTGCAAGTGTCTAGACAGGACACGTTGAAATGTGGCGTCAACATAGTTACTACAAGTGTCTAGACAGGACACAAATAACGACAATCAAAATTGGGATTTTGAGAAAATCTGAAAAAGTAATTAGTATGACTATGTATTTTGAAATACATTTCAGAATGAAATAGTTGAAAAGCATATATTGTTGTTATGTGACCTGTTCAAAGCCCAAATATATGATTCAACTCATTGTTGTTCGTAAACTACAGACGTTTCTGTATCGTACAATAGTTCCTCTTTGGTCAAGTCATGTGAATGTTCAATGTTCATGATCAGATCTTTATttaatttaacttttatttaactaagcaagtcagttaagaacacgtttttatttgcaatgacggcctaccccagccaaaccctaaccgggatgggccaattgtgcgccgccctatgggactcccaatcataaccggttgtgatacagcctggaatcgaaccagggtctgtagtgacacctctagcactgagatgcagtgccttagactgctgcactaCTCGGGAGCCCCATCTTAATAATGTTTGGTATATAGATTTTCTGGACCAATATATAAatctaaaaaaaatatctaaagacatcccagtggtggaaaaagtacccaattgtcctacctgagtaaaagtaaagataccttcatagaaaatgactcaagtaaaagtcgcCCAGTAACATCCTATTTGAGtataagtctaaaagtatttggttttaaatatacttaagtatcaaaagtaaatggaatttgCTCAAAgatacttaagcatcaaaagtaagagtataaataatttcaaattccttatattaagc

Function

NR:

description
artemin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589857.2 True 2944 mRNA 0.46 4 30883060 30902488
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110508931 LOC106598945 coding upstream 16994 30788979 ~ 30866066 (+)
LOC110508930 LOC106598949 coding upstream 131150 30721098 ~ 30751910 (+)
LOC110508929 LOC106598953 coding upstream 166418 30707254 ~ 30716642 (+)
LOC110508926 tm16h coding upstream 182709 30679644 ~ 30700351 (+)
LOC110508925 LOC106598970 coding upstream 216557 30658482 ~ 30666503 (+)
pif1 pif1 coding downstream 63225 30965713 ~ 30976082 (+)
LOC110508939 LOC106598934 coding downstream 175330 31077818 ~ 31080589 (+)
LOC110508946 LOC106598915 coding downstream 403620 31306108 ~ 31319060 (+)
LOC110508949 LOC106598913 coding downstream 432600 31335088 ~ 31340029 (+)
glmna glmn coding downstream 449019 31351507 ~ 31361674 (+)
G2127348 NA non-coding upstream 117968 30764838 ~ 30765092 (+)
G2127333 NA non-coding upstream 165163 30717513 ~ 30717897 (+)
G2127315 NA non-coding upstream 206099 30676708 ~ 30676961 (+)
G2127312 NA non-coding upstream 208518 30673932 ~ 30674542 (+)
G2127310 NA non-coding upstream 214336 30668507 ~ 30668724 (+)
G2127430 NA non-coding downstream 75517 30978005 ~ 30978303 (+)
G2127434 NA non-coding downstream 78023 30980511 ~ 30984502 (+)
G2127432 NA non-coding downstream 82733 30985221 ~ 30986042 (+)
G2127736 NA non-coding downstream 189618 31092106 ~ 31092515 (+)
G2127743 gp177 non-coding downstream 235634 31138122 ~ 31144230 (+)
G2127299 LOC106598972 other upstream 241817 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 314482 30534338 ~ 30592397 (+)
G2126497 NA other upstream 671427 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 1559676 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1608609 29270737 ~ 29274454 (+)
LOC110508221 LOC106598877 other downstream 737814 31594783 ~ 31643462 (+)
G2128189 NA other downstream 836824 31739312 ~ 31740070 (+)
G2128614 NA other downstream 1042676 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 1151188 32053231 ~ 32055655 (+)
G2128753 NA other downstream 1366830 32269318 ~ 32274380 (+)

Expression

LOC110508934(LOC106598943) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110508934(LOC106598943) Expression in each Bioproject

Bar chart with 20 bars.
LOC110508934(LOC106598943) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network