ptger4c (LOC106599187)


Basic Information

Item Value
gene id ptger4c
gene name LOC106599187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30905879 ~ 30907975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589856.2
CTGTTGTGGGAAATGTTGGAAACTGCTGGTAGAAGAAAATCAAAGCTCAGAAACATGTGTTCTGTGGTGTCGTAGGCTacgttttttatatatatatatattgctttTGATGTGTTCATAACTTGTGAAGAGACACTTCTGGAAATTTTCGGAAGGGAACGTTTCTAAGAACTTGAAgctattttgttttgtttcagttAGGAATTATGAATAATTCCGTCTATGGCGATGGCTCGAACATTTCAGAACTAGTTCAACCGCTCTGTGTCTCCCACAACCAAAGCACTTTCCCGCCACTGCGACTGGAATCAAAATCGCTGGTCACTTCAGCCACTATGTTCGCTTTTGGAGTCATGGGGAACCTCATTGCCATTGTTGTGTTATGCATCTCAAAGAAAGAGCAGAAGGAGACCACTTTCTATACGCTGGTTGTTGGAATGGCTATCACGGACCTGTTGGGCACCTGTTTCACCAGCCCGGTGGTTATCGCCACCTACATAGCCCAGAGGTGGCCCGGTGGAGAGCTACTGTGTGACTTTTTCTCGTTCTCTATGCTCTTTTTCGGCTCGGCTGGAATGTCCATTCTGTGCGCTATGGCAGTGGAACGATACCTGGCCATAAACCACGCGTATCTTTACTCCCAATACATTGACCGGACGACGGCGCGTTTGGCGCTCATGGGCATCTACCTAGCTAACATTGTGCTGTGCATCATGCCCAGCTTTGGTTTCGGGAAGCATGTGCGCCACTTCCCGGGCACTTGGTGTTTTTTGGACTGGAGGGCGACGGACCCCCTCGCTGCCTCGTACTCGTTTCTGTATGGCGGGTTCATGTTGGTGTTGATTGCGGTGACAGTTGTGTGCAACTTCGCAGTGTGTCGGTCACTTGTGGGGATGAGCCAGAAGACGCGGATAGTGAGAGCGAAGGTGTCCGCGCAAGTAGGCTCACGGCGCGTGTTCCTGCCCTCCGTCACCTGCCCGTCCGCGGCTGAGATCCAAATGTTCTGGCTGCTGATATTTATGACCATCGTTTTCCTGGTGTGCTCCATTCCTTTGGTGGTGCGCATCTTTGTAAACCAGCTGTATGGTCCTTCCAACATCTGTGCCGGAGTGAATCCAGATTACCGCAGTGATCTGATGGCCATTCGCTTCGCCTCGTTCAACCCCATTCTGGACCCCTGGGTATACATCCTCTGTAGGAAGAACCTGTTGGTAAAGGGCTGTGAGAGGGTAAAGAAGACAGTTGGACAAGTCAAGGCGGGCCGCGGGCGTAATTTAGGCTGGGTTGGCACTAGCAGTCATCATTCACTCCCGTCGTTTGAACACAGCAACGAGACCAGTTATGCGTCATTACGCACGACCAACTACAGAAACGATTCGGAGAACCAGGTTACCACCAAAAATAAATCGTTTACAGACTTTACCATGCGACAAGCCTGGGACCTTGACACGGCGCAGGCGAACTTCCATCCGTTTAGTGTAGACCAGACTACCGTGATCGGTTTCGAGGCGGAGATAGCGGTGGTGTCCAAACCGGCCATGATCGCGTCACAGCTCGGAAGCAGCGAGGCGCTTCCGGAGATGTGCTCACCAGCAGGTCTTCATAGCCACGTCAGTAAAGTGGACATAGTCACCTGTACCTTCAGCACACTAAGCTCCTGTCAATCGGAGAAGTGCCTCTGATCAACTGTTTCCCAACAAACATAAATGTTTTCATATAGACTTTTACAGCAAATGTCTGAGATGCTGAACACAGACAGCCAGGCAGACACAGGTCATGTACCTTGATGCAGCCTACAGGCCAGATTACAAAGGCTGGGCTTCTGCACACAGGAGATTTTACTAAATGGACCCATTTGGACATTTTAAGATGCACTTTATGAATCTGTAATGTGATTGTACTATGATCATACTCTAAGGGGA

Function

NR:

description
prostaglandin E2 receptor EP4 subtype-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589856.2 True 1922 mRNA 0.49 2 30905879 30907975

Neighbor

gene id symbol gene type direction distance location
LOC110508928 mrpl34 coding downstream 199288 30705085 ~ 30706591 (-)
LOC110508927 LOC106598960 coding downstream 201102 30700542 ~ 30704777 (-)
LOC110508217 LOC106598972 coding downstream 256044 30629942 ~ 30649835 (-)
LOC110508919 NA coding downstream 458431 30442013 ~ 30447448 (-)
angptl4 angl4 coding downstream 489235 30409271 ~ 30416644 (-)
LOC110508937 NA coding upstream 70744 30978719 ~ 30980452 (-)
LOC110508938 LOC106598935 coding upstream 87120 30995095 ~ 31004289 (-)
LOC110508940 gbg12 coding upstream 176340 31084315 ~ 31136167 (-)
LOC110508941 gp177 coding upstream 230111 31138086 ~ 31169294 (-)
LOC110508942 LOC106598932 coding upstream 265952 31173927 ~ 31214079 (-)
G2127615 NA non-coding downstream 21094 30884465 ~ 30884785 (-)
G2127614 NA non-coding downstream 22468 30883183 ~ 30883411 (-)
G2127609 NA non-coding downstream 30868 30874419 ~ 30875011 (-)
G2127584 NA non-coding downstream 91145 30814233 ~ 30814734 (-)
G2127570 NA non-coding downstream 101447 30789034 ~ 30804432 (-)
G2127637 NA non-coding upstream 16272 30924247 ~ 30931466 (-)
G2127673 NA non-coding upstream 77098 30985073 ~ 30986114 (-)
G2127817 gbg12 non-coding upstream 87183 30995158 ~ 31136091 (-)
G2128197 NA non-coding upstream 311087 31219062 ~ 31219909 (-)
G2128215 LOC100380853 non-coding upstream 334192 31242167 ~ 31242441 (-)
G2127455 NA other downstream 350692 30553589 ~ 30555187 (-)
G2127177 NA other downstream 471025 30434435 ~ 30434854 (-)
LOC110508917 LOC106598978 other downstream 504072 30399711 ~ 30401807 (-)
LOC118944842 NA other downstream 1782137 29118684 ~ 29123806 (-)
G2128216 NA other upstream 336116 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 411308 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 803633 31708667 ~ 31761665 (-)
G2128568 NA other upstream 974740 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 1115083 32023057 ~ 32029225 (-)

Expression


Co-expression Network