LOC110508938 (LOC106598935)


Basic Information

Item Value
gene id LOC110508938
gene name LOC106598935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30995095 ~ 31004289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589861.2
TTAGCGCGAGACGCACAGGATTCAGACACGCGTAAAGTAGCAGAGCACGCGTTTCACACAGAACTATATGGACTTGTAGTCGTTCGTTCCCAATCGCATGAAGAGCACGAGAAAGGTGGACATTATTAACAAGGAGCCATAGCAATAATACGAATCTTAAGAAAATCACTTCAGAATCGGGATACACTTCCAAGCAGCACAACATCCAAAGACAACTCGGCTGACTAAGCAAGAGGTAGTGCCCGTCATGCAGCACTATGGAGTGAACGGCTACTCTCTCCACGCGATGAACTCCCTGAGCGCAATGTACAACCTGCACCAGCAGGCCGCGCAACAGGCGCAACACGCGCCAGACTACCGACCTTCTGTGCACGCGCTCACCCTCGCGGAGAGACTGGCTGACATCATTCTGGAGGCTCGCTACGGGTCCCAGCACCGCAAACAGCGCCGGAGTCGCACCGCGTTCACCGCACAGCAGCTCGAGGCACTGGAGAAGACCTTCCAGAAGACCCACTACCCCGATGTTGTGATGCGCGAGCGCCTGGCCATGTGCACGAACCTCCCCGAGGCCCGCGTGCAGGTGTGGTTCAAGAACCGCCGGGCCAAATTCCGCAAGAAGCAGCGTAGCCTGCAGAAGGAACAGCTCCAGAAACAGAAGGAGGCCAACCTAGAGGGAGGTGACGAGGAGGAGGCTCCCACcaccatcactccagagaaccagCTCcccccatcctcttcctccttaGAGGTTGAGGGTCCGCCCCTTCTGTTGGTGCCGGAAATTAGCGTGGAGTTGAACGTGACCTCGGCGGAGCAGTCAGGCAGCGAGTCGGCCACAGAGGACAATGCCACCGATAAGGAGGAGGAGTCTAACCCACAGAGGGAGGAGTTAAAGAGTGAAAGGGTGATCACACCCGGCAACGTCTCTCCACCCTGCAAACGACTTAGCCCCAAACCTGAATCCCCTATGGTCTCCCGGTCTGTGACGCCCTCTTCCAGTGGTGTCAGCGGTGGGATCTCCCAGAGccactcctactcctcctccccgCTCAGCCTCTTCTGCCTGCAGGAGCAGTTCCGCCAGCACATGGCTGCCACCAACAACATGGCACTCTACCCTTCCTTCGACATGGGCACCACCCCAACTCTGCCCTACCTGGGCATGAATGTCAACATGTCTCCGGCGCCGCTGGGCTCCCTGCCCTGCCAATCCTACTACCAGTCCCTGTCCCACCACGCAGCGCAGCAGGTGTGGAACAGTCCCCTGCTCCAGGCCTCCGGAGGGCTCCCCAGCCAAAACAGCAAGACCACCAGCATCGAGAACCTCCGGATGCGGGCCAAGCAGCATGCGGCCTCCCTGGGACTGGACACGCTGCCTAACTAAGCCCAGGATCTTCGTGCGACCTAGCTGGGAGATCGGTACTACATCCTACCCATCCCTTGTCTGTAACCTCCGTAGCCCTACAGGAACCATATTCTCCACCAGATGGTTTCGGGGCATTAGTAGCCAGAGTTTTGAAAACCAAAATGGCAAATCACCCTGGACCGAGTTCTCTCCTGCTTCTTGCTTTATCAGTTGCCTAACGTCTGGGATTGCACAGGCTATACACAGGATCGCTAAAGCAGAGCAAATACACTTCATACGTATTTACCTGTCTAGTGTTGCACTTGGTGATAAAGACTTTGCAATGTAATGTTTACAGATAAAAGATGAATTTAGGCCGTTTTAAGGGAATTTGGGTCTTCAAGGGGGAAAATACATTTGTGCCAGCATTGGTGGCATTGAGAGACTATTTGTACCGTGGGGCCATTACCATTTCAATTAGGTCATGTAGGTACCTAGCACATTCTAAAAACGCAAGCACATACATAAATATAAACTCAAGCCATGTTCTCCTCAATATCCTAATTAGAAGTGACTAATTTATCAGTTTAATGCCCAGTATTAAATCATGTTGCACAGAGACTGGCTTGGTAATGAGAAAATAATTTCAGTGACTAAAGGTGCAAAGCTTTTAATTACATTTTGCCCtgggcagaggggaggggagcATATGCAATTATGAACATTCACACTATTTATGATTCCCTTATACGTAACTTGGTAACAGCATCCCTCCACAAACAGAATAGGGGGCCTTTAGGGCTGGGGGGCGGGGGTAGTCTCCAGTACTTTCTGTTGTACTCTTTAAGCACTTTAAGGAGTGGCCAATCTTTAAATTGTAGTCAATTATGCACCTGGGATTCTCTCTGTGCTGGGATCCCATCAAGTCCATCCACTCCAATAATGTAAATAATTGTAATATGTAAATTAagaagaaaaataagtctatCTATTAATGTTTACTGATAAGGCAAATGTAAAGGTGTTCATATGTTGTTAATTGATCATAAACTGTCCAAGTTGGCAATTCCTATAGTTGTCAGAGTTGTACAATAGTATTTAAACGGCTCACGCCATTCCATTACCTTCTATTCCCTGGACTACTGAAGCTATACTGTCTGTTCTACATTTGAGTTCCATTGTGGCTGTGATTGTAAAAGTTCTACTGTTTCTCTCCAGCCTGTCATACTAACTGGTCCCGTGGTAGATTTTAAATGTTGGCGAGACTAATCTGGAAACCATAGGCATTATCATTTTCTCTCTTTAACAATGTAAGTTTGAAAAGTGATGTTGTAAAATAAATCCTAAATAAAGCCATGCTTGGTCTTTACATACTGTAGCTTCCTTCTCTTGGTTCTTGTTCTCACATGACAAAGCCACAGCTAAGGATTTTACAATCAGTCTTCTTCCAGGGGAGGAAGGAGTGCAGTGTGGAGGAAGGGAATTCACTTTTAGAGGAATAGAATGTGAGAAACGAGGGGGAAaaggaaggtgacagggataacGAGAGGGAAAGACAGGCAATATACAgtatggtaacactttacttgacacccaatGTCATAACACATTAGGACACggtcataacctgtcattatggtCATAACACTCATGACCCATACATTTACActtgttgtgacatatattgcgttattttaaggctggttatgacacctacataagtgtgtcaaaacccacatttattcaaattaGTTTCTTtccctgccaagaagtttcctttcgtttgaaagtaacaaaaaaaaaaatcagttgtAATGAATTCTTGTAGAAAATAGACTTCATGACACtgttatgaccatcataatcatataagccagataggcctatcatgTACATGACCTTATGTCAGTAgtcagtcaaaaagagggtgttttgtcctgctcctgaaacctgctcctgcattcatcccagtcatcagcagcAGAGC

Function

NR:

description
diencephalon/mesencephalon homeobox protein 1-A-like isoform X2

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0030901 midbrain development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589861.2 True 3332 mRNA 0.48 5 30995095 31004289

Neighbor

gene id symbol gene type direction distance location
LOC110508937 NA coding downstream 14643 30978719 ~ 30980452 (-)
ptger4c LOC106599187 coding downstream 87120 30905879 ~ 30907975 (-)
LOC110508928 mrpl34 coding downstream 288504 30705085 ~ 30706591 (-)
LOC110508927 LOC106598960 coding downstream 290318 30700542 ~ 30704777 (-)
LOC110508217 LOC106598972 coding downstream 345260 30629942 ~ 30649835 (-)
LOC110508940 gbg12 coding upstream 80026 31084315 ~ 31136167 (-)
LOC110508941 gp177 coding upstream 133797 31138086 ~ 31169294 (-)
LOC110508942 LOC106598932 coding upstream 169638 31173927 ~ 31214079 (-)
LOC118944807 LOC106598929 coding upstream 249644 31253933 ~ 31254937 (-)
LOC110508943 LOC106598918 coding upstream 254780 31259069 ~ 31280002 (-)
G2127673 NA non-coding downstream 8981 30985073 ~ 30986114 (-)
G2127637 NA non-coding downstream 63629 30924247 ~ 30931466 (-)
G2127615 NA non-coding downstream 110310 30884465 ~ 30884785 (-)
G2127614 NA non-coding downstream 111684 30883183 ~ 30883411 (-)
G2127609 NA non-coding downstream 120084 30874419 ~ 30875011 (-)
G2128197 NA non-coding upstream 214773 31219062 ~ 31219909 (-)
G2128215 LOC100380853 non-coding upstream 237878 31242167 ~ 31242441 (-)
G2128200 NA non-coding upstream 240833 31245122 ~ 31283855 (-)
LOC110508945 LOC106598921 non-coding upstream 241986 31246275 ~ 31305211 (-)
G2127455 NA other downstream 439908 30553589 ~ 30555187 (-)
G2127177 NA other downstream 560241 30434435 ~ 30434854 (-)
LOC110508917 LOC106598978 other downstream 593288 30399711 ~ 30401807 (-)
LOC118944842 NA other downstream 1871353 29118684 ~ 29123806 (-)
G2128216 NA other upstream 239802 31244091 ~ 31244692 (-)
G2128242 LOC106584167 other upstream 314994 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 707319 31708667 ~ 31761665 (-)
G2128568 NA other upstream 878426 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 1018769 32023057 ~ 32029225 (-)

Expression


Co-expression Network