LOC118944807 (LOC106598929)


Basic Information

Item Value
gene id LOC118944807
gene name LOC106598929
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31253933 ~ 31254937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965889.1
TTTCTGTGCTCAGGGTGGAGTTTAACAGCGGAGAATAGAGGAGCACTTTAGGACATTGCTTCTTCTATGTAGTCTATACAGGGGATGGAAGATGCTTCTAACACTTGTCAGTTAGTACTTAAGTTACTCAGTATTCTAGTTTTAAGTTACTCAGTATTCTAGTTTTAAGTTACTCAGTTAGTACTTTAATTTGGTCCCAGGTCCTACAGATCCTGAGTTTTTTGCGGGTAGTGCAGTAGCATTATGGGGGCACGGTTGTGCACTGTTAGGTGGACGCCAGATGGAGAGTGTCTAGAATGTGTGTGAGTTCCCGGTGTGATCTCTGCATGTCTGTGACAgtgtatttgatttgatctgtgtgAGGATATGCCTACTAACGTGTGTGTATTCCAGTCAGCTGTCGTCTGAGATAAATACGTGTCGTGGGGAGCTGTCATCCATGGAGCAGGAGCTGCAGAGGCTGCGGAGAGACACCAGTATGAATTCCTCCCAGCTCAGCTACGTGGAGGAGACCCTGCAGAAGACCCAGGGCCTACTGGAGGAGAAGAACAACACGGTTGTGGACTTGGAGGAGAAGCTCCACTGCTGTGAGGAGGACAGGCGGACCTCTGTGCAGCATGTGAAGGATCTGGAGGGACAGCTACAGGAGGTGCGCGATGAGATGCACGACACCCTAGAGAAACTACAGGAGCTGAGAGACCTGTTACAGGCCTCGCAGCTTGGCGCAGATGAACGACAGATTTCATTGGAGAAACTGTCCGCCGAGCTCAGGTGAGCCTCTCTGCCAACCGcccgacacacat

Function

NR:

description
coiled-coil domain-containing protein 18-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965889.1 True 803 mRNA 0.50 2 31253933 31254937

Neighbor

gene id symbol gene type direction distance location
LOC110508942 LOC106598932 coding downstream 39854 31173927 ~ 31214079 (-)
LOC110508941 gp177 coding downstream 84639 31138086 ~ 31169294 (-)
LOC110508940 gbg12 coding downstream 117766 31084315 ~ 31136167 (-)
LOC110508938 LOC106598935 coding downstream 249644 30995095 ~ 31004289 (-)
LOC110508937 NA coding downstream 273481 30978719 ~ 30980452 (-)
LOC110508943 LOC106598918 coding upstream 4132 31259069 ~ 31280002 (-)
LOC110508945 LOC106598921 coding upstream 30209 31246275 ~ 31305211 (-)
LOC110508948 NA coding upstream 64338 31319275 ~ 31323287 (-)
LOC118944907 NA coding upstream 65570 31320507 ~ 31320630 (-)
LOC118944817 NA coding upstream 86865 31341802 ~ 31343993 (-)
G2128215 LOC100380853 non-coding downstream 11492 31242167 ~ 31242441 (-)
G2128197 NA non-coding downstream 34024 31219062 ~ 31219909 (-)
G2127817 gbg12 non-coding downstream 117842 30995158 ~ 31136091 (-)
G2127673 NA non-coding downstream 267819 30985073 ~ 30986114 (-)
G2127637 NA non-coding downstream 322467 30924247 ~ 30931466 (-)
G2128266 NA non-coding upstream 116652 31371589 ~ 31371788 (-)
LOC110508218 LOC106598907 non-coding upstream 126820 31374369 ~ 31397685 (-)
G2128288 NA non-coding upstream 130268 31385205 ~ 31385435 (-)
G2128216 NA other downstream 9241 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 547388 30705085 ~ 30706591 (-)
G2127455 NA other downstream 698746 30553589 ~ 30555187 (-)
G2127177 NA other downstream 819079 30434435 ~ 30434854 (-)
LOC110508917 LOC106598978 other downstream 852126 30399711 ~ 30401807 (-)
G2128242 LOC106584167 other upstream 64346 31319283 ~ 31323364 (-)
LOC110508968 LOC106598866 other upstream 456671 31708667 ~ 31761665 (-)
G2128568 NA other upstream 627778 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 768121 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 807112 32062049 ~ 32187519 (-)

Expression


Co-expression Network