LOC118944817


Basic Information

Item Value
gene id LOC118944817
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31341802 ~ 31343993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040197.1
ccgccctatgggactcccaatcacggccagttgtgatacagcctggaatcgaaccacggtctgtagtgacgcctctagaccgctgcgccactcgagagcttAACAGACCTCACTTTAAAGAAATTTGCCTTGTTGTAAAAGTTGACCCATCACTTTAGAGTGGATTGCAGTCAAGAAGATTCAGTTGaaacttagaccgctgcgccactcgggaggccaaagGGTGCATAGCCGACAAGGTGCGATCTGCTAGAATCCAGGGGGGAATCCTATgaagcaagctagatctactcaggggTTTCTAAAGCTAATCAGCTTCAATTAGCTTCGCATTTCATAGGCTTCGTCCGTACTATGACTGTGGATATTGCTCGTCCGTCTGCTgctaactctagcaggcttgtaactaCGCGTGCATGTAGCACATGGTTAGTCGGACGATAAAACTCTTCAGTGACTTAATACTGAAACGTCAATATATGGGCGAGTAAGTGCCACATTTTCATTTGTGCTGAAATCAAAATTAAATAATATTTTTCTTGCAAATTCAGCAAGCTATTGCGTGAAATAGGATTTTCGAAGTGCCTTCTGTATTTTATTATTGTTAATGCCGACTTTGGTTTGctttggtgtgcttatcaatgcacaaACACCTTTCCCACCACTCTGGTCGATAAAATAATTGTATTAAGTCATACAAAAGTGTTACTGTGCGTGAAGTTTAAAATGCTTTCTGTCATTACTAAATGGGTAATGTGAtatattttaacatttttattttttaacacagacattttaataaaatatttaatcagTTGTCTTCCTCAAATGAAGGAGGGAATCTGAtgtcattggtcctcaactcgtggctcagtcatttcattcagGGTTATCAGTGGTGTACGGGAGGCCCTGAAGAGCCCGACCTCAGTCGAATACCTCTCTATTCTGATGTAGCAGCTGTCACTTCAGGACCCACAGAGCCTAGTCTAGCTACTCACAACCATAGCCATCCAGTATCCTCTACTATATACTACTTTCTTTACTGTTACAGCCAAATCTTTACATGTTTCCTATCAGAACGGCAAGGGCTGGAGGTATCGCGCTTCTGATATCATTGATTTACTTTTATTTGAAATCACTATTGGAGAACCTTGCCTTGCCTTTTTTGTATTACTTTGGTTGATTTTTCAGTTTTATTGATACAACTATTGAGAATTGAGAGAAATTACTTTTCATCTTCTCTCAGGATATGGACAGTGCTTGTTGAGGTTTTAGTGCTCTGAAATGAAGACTGTAATTTCCAAGAAGATTGTGCAGACGTACTGTATCATCGAATAGGCttgttattacacaggtgcatagTTTACAGCTTCATGGCGGAAATGTATAGTCGTATTATGCCTCTCCTAATTTTCAAACAAACACTGATATACTGAATCTGATGATACTGTAAATGCCTAAATCAAATCTTCAAAGTTACAAGCCTCCAATGTTTAACCCCATGCTTCTATACAACCAAATAAATCACACTCAGGTTTTCCACTGTGTATAAAAATGTCATGTGATCGACTATATTGCCATACTGGAAGAGGATGGTGCAATAAATGTGTCGCTGTTTATCCCAGCTTCCTTCACAGGAAGTTTATGGTGTTGTAATCTCATTTGTTCCAAGTGTGACAAGAAAGTTGTCTGAAAATATTTGTTTTGGACCAGGTGGCTCGCGCGAATTGAAACATTATCTGAGGAGCATTTTGGAggggatacattttttttatcgtGATTCTTTATGGATATTTTGTGTATTTTATAATTCAAACATTTTAGGATGATACGGTTAGAGATATAACCTTAGTATATTATTTCCTAAGCTTTTCGCTTGAAGCCAATAACATGTTAATTTGGTTGGTGCGAGTTTTAATTTTTTCCTTGTTCATTTAAACATTTGTGGAAATAAAATATTGTGCAAT
>TU2433297
TGTAATCTCATTTGTTCCAAGTGTGACAAGAAAGTTGTCTGAAAATATTTGTTTTGGACCAGGTGGCTCGCGCGAATTGAAACATTATCTGAGGAGCATTTTGGAggggatacattttttttatcgtGA
>TU2433296
TTGGTTGATTTTTCAGTTTTATTGATACAACTATTGAGAATTGAGAGAAATTACTTTTCATCTTCTCTCAGGATATGGACAGTGCTTGTTGAGGTTTTAGTGCTCTGAAATGAAGACTGTAATTTCCAAGAAGATTGTGCAGACGTACTGTATCATCGAATAGGCttgttattacacaggtgcatagTTTACAGCTTCATGGCGGAAATGTATAGTCGTATTATGCCTCTCCTAATTTTCAAACAAACACTGATATACTGAATCTGATGATACTGTAAATGCCTAAATCAAATCTTCAAAGTTACAAGCCTCCAATGTTTAACCCCATGCTTCTATACAACCAAATAAATCACACTCAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040197.1 False 1970 mRNA 0.39 2 31341802 31343993
TU2433297 False 129 lncRNA 0.38 1 31341989 31342117
TU2433296 True 361 lncRNA 0.35 1 31342233 31342593

Neighbor

gene id symbol gene type direction distance location
LOC110508948 NA coding downstream 18515 31319275 ~ 31323287 (-)
LOC118944907 NA coding downstream 21172 31320507 ~ 31320630 (-)
LOC110508945 LOC106598921 coding downstream 36591 31246275 ~ 31305211 (-)
LOC110508943 LOC106598918 coding downstream 61800 31259069 ~ 31280002 (-)
LOC118944807 LOC106598929 coding downstream 86865 31253933 ~ 31254937 (-)
LOC110508952 NA coding upstream 2 31343995 ~ 31351517 (-)
cdc7 cdc7 coding upstream 17718 31361711 ~ 31369517 (-)
LOC110508218 LOC106598907 coding upstream 30376 31374369 ~ 31397685 (-)
znf326 znf326 coding upstream 62706 31406699 ~ 31410904 (-)
LOC110508955 lrrc8d coding upstream 67814 31411807 ~ 31419090 (-)
G2128200 NA non-coding downstream 57947 31245122 ~ 31283855 (-)
G2128215 LOC100380853 non-coding downstream 99361 31242167 ~ 31242441 (-)
G2128197 NA non-coding downstream 121893 31219062 ~ 31219909 (-)
G2128266 NA non-coding upstream 27596 31371589 ~ 31371788 (-)
G2128288 NA non-coding upstream 41212 31385205 ~ 31385435 (-)
G2128292 NA non-coding upstream 50861 31394854 ~ 31395201 (-)
G2128307 NA non-coding upstream 124327 31468320 ~ 31468556 (-)
G2128242 LOC106584167 other downstream 18438 31319283 ~ 31323364 (-)
G2128216 NA other downstream 97110 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 635257 30705085 ~ 30706591 (-)
G2127455 NA other downstream 786615 30553589 ~ 30555187 (-)
G2127177 NA other downstream 906948 30434435 ~ 30434854 (-)
LOC110508968 LOC106598866 other upstream 367615 31708667 ~ 31761665 (-)
G2128568 NA other upstream 538722 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 679065 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 718056 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 884413 32228406 ~ 32230258 (-)

Expression


Co-expression Network