LOC110508955 (lrrc8d)


Basic Information

Item Value
gene id LOC110508955
gene name lrrc8d
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31411807 ~ 31419090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589883.2
ACATCTGAGGTAGCGACTTTCACCAAGGGCTCTACATATACTCTATGTCTTCATTTTCACAATTAGGCTGTATAGCGTAGCTACAGACAAACAGGAAGAGAGATTGCGAGAATTTACATTACATTGTGTAGCCTACAATCTACAGGTGCAGCAGATATGATGTGCCGGATACAATGTATTAATTTATAGCCTTAATATTAGGAGTTACTTATTATATAGTTACTGAATAGATGGTTACAGTTGAAAGCTTCCGAATGAGTTATATTAATATGTAACAGAATGCGCACATTCGATCAAGTCGTAGTACAGTATGCGGAAGACACATTCGATCAAGTCGTAGTACAGTATGCGGTCGGTGGTGCCCCAGTTATCATCATTATTTCCAATTTGGTGGCATCTGAGTGAGACCTAGCTGGAAAGAACTGTGAAGCTGTTTGAGATAGATAAGAATGATGTGTCTTTAGTACGTTGATCTGTGGCGTCCACCAATAAGAAACTCCGGTAATAGCGGAGTCATGTTCAAATTGGACCACCCTTTTCTTCAAATTACATGCGTACAGTGGTCGACGTTATGCGCATATTCTCCACGAACGACGCTCAGGTATGCAGAACCGCTGGTATTGAGGATGGTGCCGACATTCGCATTGTCACGAACAAATGTTCTTGGTCACAAGCTTTGTTCCATAGTTTAATGGATTGAGCTGAATCGTCAGAAGGAATTGTCTGGAGCGCAAAAGTGGAAATGGAGTACAAAACATCTAATTAGATAAGGTCACCAAGATAGAATGTTTACCATCACAGAGTTAGCGTCGCTGAACGACATCCAGCCGACCTACCGCATCCTAAAACCATGGTGGGACGTCTTCATGGACTACCTGGGGGTAGTCATGCTCATGTTGTCCATCTTCGCCATGACGATGCAGATCACAAAGGACCAGGTGGCGTGCCTTCCATGCCTGGAGGAAGCGGTGGCAGGGCCAAACTCTTGGACATCCCAAAGTCCACAAGAAACCGCCTCATCAGCAGTTAGCATAACGACAGTGTTTGCTACACCAATGGCCACTAAAGATCTACCAGACAGTGCAGTACATGAGGTCCACAACACCCAGCCCATCGTTGTGAAGCGAGAGAGCAAAATGCAGCAACCCAGGCCCACAGGGATCCAAACCAACTTAGATTATCAGCAGTATGTCTTTGTCAACCAAATGTGTTACCACATAGCCTTGCCCTGGTACTCAAAGTACTTCCCGTACCTCTCCCTCATCCACACCCTTGTGCTTATGGTCAGTAGTAACTTCTGGTTCAAATACCCCAAGACAAGCTCAAAGATTGAACACTTTGTGTCCATTCTCGGACGGTGCTTTGAGTCTCCGTGGACTACAAAGGCTTTGTCCGAGACAGCATGTGAGGATTCTGAGGAGAACAAGCAGAGACTGACTGGCACCACTTCAGCACAGAGAGAGTTATCACGGGAAACTAAAGATGAAAATGCTGCAAACTCATCTACCCCTATGCTTGGGAATACAGGAGTCAAGTTCTCAGCAGATAAGCCTATTGCTGAAGCCCCAAGTATGACTATCCTGGACAAGAAAGATGGGGAGCAGGCCAAGGCTCTATTTGAGAAGGTGCGGAAATTCCGCGCCCATGTGGAGGACAGCGATTTCATCTACAAGCTCTATGTAGCTCAGACTGTGGTCAAAACGGTCAAGTTTATTTTGATTCTGTCCTATACGTCAACATTTATTGCTGCCATCGAGTTTCATCACATATGTGAACCCAAAATCAAACACTTAACCGGATATGAGCAGTTCTTTTGTACCCACAACATGGCTTTCATGTTGAGAAAGCTCCTCCTCAGCTACATGGCCCTCATATTGATCTATGGGATGGTCTGCTTGTATTCCCTCCACTGGCTGTTCAGGCGCCCCCTTAAAGAGTACTCATTTGAGAaagtcagagaggagagtagcTTCAGTGACATTCCTGATGTGAAGAACGACTTTGCGTTCCTTCTGCACATGGTAGATCAGTACGACCAGCTGTATTCCAAACGGTTTGGTGTCTTCCTATCGGAGGTCAGCGAGAACAAGCTGAGGGAGATCAGTCTAAACCACGAGTGGACATTTGAGAAGCTCAGACAGCTTGTGACCCGAAATCCCCAAGACCAGCAGGAGCTCCATCTCTTCATGCTTTCTGGTCTCCCCAATGCAGTGTTTGACCTCACCGACCTGGAAATACTTAAACTAGAGCTAATTCCTGAGGTCAGGTTTTCGGCAAAGGTTTCCCAAATGACCAGTCTGCAGGAGCTGCACCTTTGCCACTGCCCTGCCAAAGTTGAGCAGACTGCCTTTGTCTTTCTCCGTGACCACCTCCGCTGCCTTCATGTCAAGTTCACAGATGTCGCTGAGATCCCAGCATGGGTTTATTTGTTGAGGAGTTTGAGGGAGCTAAACTTAGTAGGGAATTTAAGCTCAGAAAACAACAAAATGATAGGACTAGAGTGCATGCGTGATTTGAAACATCTTAAGACATTATATCTGAAGAGCAACCTCACCAAGATCCCCTCAAACCTCACTGAGCTGTCCCCACACCTGATCAAACTGGTGGTGCATAACGATGGTACTAAACTACTTGTACTGAACAGCCTCAAGAAGATGACAAACCTCGCCGATCTGGAGCTGCACAACTGTGAGCTGGAGAGGATCCCCCATGCTATTTTCAGCTTAACCAACCTTCAAGAGCTTGACCTCAAATCCAACAACATTCGCACCATTGAAGAGGTCATCAGCTTTCAGCACCTCAAGAGGTTGACCTGCCTCAAATTGTGGCACAACAAAATCATCACCATTCCAGCCTCAATAGGCCAGGTCAAGTCTTTGGAGTCACTTCATCTTTCACACAACAAACTGGAGACGCTCCCGCCGGCGCTGTTCCACCTCCCCAAGCTGAGGCACTTGGATGTCAGTCACAACTCCATCACAGTGATCCCGCCGGACTTGGGTCTCCTGCAGAACCTCCAGCACTTCGCAATCAATGCAAACAAGGTGGAGGTGCTGCCCAAGCAGCTGTTCAGGTGCACCAAGCTAAAGTTCCTGTGTCTGAGCAATAATGTCCTCACCAACCTGCCTGAGACTGTGGGTCAGTTGGTGCATCTTGCTCAGCTGGAGCTGAGGGGGAACTGTCTGGACCGCCTTCCCTCACTGCTGGGGAACTGTCGCCTTCTACGTAAAAACAGCCTCATTGTAGAGGACCACCTTTTTGACACTTTGCCTGTAGAGGTAAAGGAGAGCATTAGTCGGGAGACCAATGTGTCCTTTGCGAGTGGCTTATAGTTGATAATTTCTGATATCTTAAACCCTTATGGTACATTGATTAACTGAAATGTATATTACTCACTGAAGCAATACGCTATGAAAGTAACACGTTATTTACCAGGAACTAGCCTTGTAGTTTTTTATAACTTTTGTAGGCTTTTTGAATCCTCTTCAATGGGCAAAAACGTAGCGCAATGGTCTTGAAGCCAAATACTTCGTAAAGGCACATGGCAGAAGTACATTCAAACACAAATATAATTTTATATACAGGTATTTCTTAAACGATCACGTTTTCAAGAATTTGATGATGTAACTTCAAGCACATTCAAAAGATTAGGGGAAATGACCCGGAAGTAAAACAGGCGGTTGCTTTCACAGGATATTGAACCACGTTTTATTGATTATCAATGCCCTATATGGGTAGTTCCTATACATTTTTTGCTTAATAAAGTGAGAGAGAATGCTTCTCCTCAACAAAGACTGTATAGCTCTATAAATAATGTAATATCATTTCAAAGTATAATTTCATTAAATATTTAAGAATGTTCAAGATAAAAAAAAGCTTTTAGTTACTTCATAGGGTATTATGACATAATATTGTTAGCAGTAATAGATTTTTAGACTTAATAACAAATATTGTATTAGCTACTCAGGTATAATGTTAACCCTGGGGACCATCATTTTGCCTTAACTGCTGCTATTTCTCAGTGAGGGCGTTCATAAGAAAAGACTAAATGGCTCTCAAGTTTGTCGATACACTACCTGTCATTATTCACAACACCATTCAGTAAAATAACAAATGCTATTTTCAGTAGTAATTCACTTTTGGGGATTCCGGTTGAAATTGGAAGTACTTTGCCCAACCAATATTTGCTTTGCTTTTTGTTATATTGTTGAATGTTTATTATTGTTTTACACTTCTCTATCACAGACCATGCTAAGCATTTGCGTGTGATTGAAAATAAAGGAGGGTTGACAAAAGGGAGGCAATGTTTTACACCAAAACAAGTTTTTAAATTAGGCAACAATAGCATCAATTAAATGTACACATGGGACAAGATTGTTATATTGCCTTTTTCCAATGTATTTCTGTACTGTACATAAACTGTTCACATTTACAAGCATTCTGGCACAATAAAACTAGATCTTAGATACAC

Function

symbol description
lrrc8d Enables volume-sensitive anion channel activity. Involved in cellular response to osmotic stress; organic acid transport; and protein hexamerization. Located in cytoplasm and plasma membrane. Is integral component of plasma membrane. Part of ion channel complex.

NR:

description
volume-regulated anion channel subunit LRRC8D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589883.2 True 4471 mRNA 0.43 2 31411807 31419090

Neighbor

gene id symbol gene type direction distance location
znf326 znf326 coding downstream 903 31406699 ~ 31410904 (-)
LOC110508218 LOC106598907 coding downstream 14122 31374369 ~ 31397685 (-)
cdc7 cdc7 coding downstream 42290 31361711 ~ 31369517 (-)
LOC110508952 NA coding downstream 60290 31343995 ~ 31351517 (-)
LOC118944817 NA coding downstream 67814 31341802 ~ 31343993 (-)
LOC110508219 LOC106598894 coding upstream 14032 31433122 ~ 31466447 (-)
LOC110508958 LOC106598897 coding upstream 52204 31471294 ~ 31490838 (-)
cldn18 LOC106598896 coding upstream 86424 31505514 ~ 31508287 (-)
LOC110508960 LOC106598900 coding upstream 89316 31508406 ~ 31511223 (-)
trnap-ugg-71 NA coding upstream 102411 31521501 ~ 31521572 (-)
G2128292 NA non-coding downstream 16606 31394854 ~ 31395201 (-)
G2128288 NA non-coding downstream 26372 31385205 ~ 31385435 (-)
G2128266 NA non-coding downstream 40019 31371589 ~ 31371788 (-)
G2128307 NA non-coding upstream 49230 31468320 ~ 31468556 (-)
G2128286 NA non-coding upstream 72104 31491194 ~ 31494425 (-)
G2128326 NA non-coding upstream 83187 31502277 ~ 31502922 (-)
G2128278 NA non-coding upstream 84974 31504064 ~ 31504876 (-)
G2128330 NA non-coding upstream 92694 31511784 ~ 31512006 (-)
G2128242 LOC106584167 other downstream 88443 31319283 ~ 31323364 (-)
G2128216 NA other downstream 167115 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 705262 30705085 ~ 30706591 (-)
G2127455 NA other downstream 856620 30553589 ~ 30555187 (-)
G2127177 NA other downstream 976953 30434435 ~ 30434854 (-)
LOC110508968 LOC106598866 other upstream 292518 31708667 ~ 31761665 (-)
G2128568 NA other upstream 463625 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 603968 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 642959 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 809316 32228406 ~ 32230258 (-)

Expression


Co-expression Network