LOC110508958 (LOC106598897)


Basic Information

Item Value
gene id LOC110508958
gene name LOC106598897
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31471294 ~ 31490838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589886.2
CTTCACCGGGCTCGGCCCAGCCGTCTCTCTCCCAGCTGTCTACACCTTAGCCGCCAGGCTAGACTTGAATGAGAGCTTTCATGGGCCATGAATGCAGCAGTTGTCTCCAAGCCAGGAACCCCCCCCAGCTACGAACGGGCCATCGCGAGGCACGAGGTGCGTGAGATCGAGCAGCGGCACACACAGGATGGCCTACGGGAGCGGGAGGCCCCCTCGGTGGCCGACAGCGAGGACGTGGTGGTTATCTACAACCGCGTGCCCAAGACGGCCAGTACCTCCTTCACCAACATCGCCTACGACCTGTGTGGCAAGAACCACTACCACGTGCTGCACATCAACACCACCAAGAACAACCCGGTCATGTCCATGCAGGACCAGGTGCGGTTTGTGAAAAACGTGACAGAGTGGAGGGAGATGAAGCCGGCGTTCTACCACGGTCACGTTTCTTTCCTGGACTTTACAAAGTTTGGAGTAAAGAAGAAGCCCGTCTACATCAATGTGATCCGCGACCCCATCGAGCGCCTGGTGTCCTACTACTACTTCCTGCGTTTTGGGGACGACTACCGGCCCGGCCTGCGGCGCCGGAAACAGGGGGATAAGAAGACCTTTGATGAGTGTGTGTCGGCGGGAGGCTCAGACTGCGCCCCGGAAAAGCTGTGGCTGCAGATCCCCTTCTTCTGTGGTCACTACTCTGAGTGCTGGAATGTGGGCAGTCACTGGGCCCTGGAGCAGGCCAAGTATAACCTGGTCAATGAGTACCTGCTGGTGGGGGTGACAGAGGAACTGGAGGACTTTGTTATGATGCTGGAGGCGGCGCTGCCACGCTTCTTCAGGGGCGCCACAGAGCTCTACAGAACAGGGAAGAAATCCCATCTGAGGAAGACGAGTGAGAAGAAGCCGCCGACCAAGGAGTCCATCGCCAAGCTGCAGCAGTCGGCCATCTGGAAGATGGAGAACGAGTTCTACGAGTTTGCCCTGGAGCAGTTCCAATTTGTCCGGGCTCACGCCGTCCGGGAGAAGGATGGGGAACTCTACCTGCTGGCCCAGAACTTCTTCTACGAGAAGATCTACCCCAAAACTAACTAACTAATGCACATGGAAGATGGACCATTCATCTAGGCTTCATCCCGTAGTCACATACActggacagaggagaagaggaagactAATATAATCAGTGGGTCTGTGGAACTGTCTGTGTTGGACGTTAGTCAGCAGTTTCTGAATGTCGCCCACTTAACTAActgactcctcctcctcgtctccaTAGTAGCCGACAGAACTAGGAAGTGGCCTCTTCCTGGTGCGAGATCATGCCAATAGGTCATGTTCCCACCAGCATTCCAGGTCCAGGACTCCCTTTATACTTCCAGGTGAAAGGTCACAGGAGTGGTATGCTCGACGGACACATGACAGGAGACGAGTCTACTTGGCAGCTGCCCATGTTCTCTTTCTTCTGATCACATGATTTATATTTTCCGTCCAAGGGGAGGGGTTTTATTGGCCGTGTTCTGTTTGGTTTAGTTTTTGTGGTTTATTCTACTTTACTATCATCGTCTATGGGAACATTGTCGACCCAGTTTTATACGTTAAGAGGGTGTCATTTTTAATGTTGTAACCCTCCCACTAATAACTTAAAAGTTGACTACTATGTTATCTTGGAGTTTACCTATATGAACTGCAGACATTTTTCCAAAATCTAAATCCTGTGACCTCCATAGACTTGAGTGACAGATGCACCCTGTTCACGACTGTGGTACTACTATTTAGTGTTtgatactatactatacttaTTTAGTTGTTTTCTGACTCTTTCACCCGGTTGGAATATTGCTAGGAGGAATGTGAAGTGTTTGCACATGATTTAATTAAACTAAGGAAGAAGACAGACAACCGACCATTTAGCTGCTGTACAAAATACTAATTTAAATCTGGATCAAACAGTTATTCTATATCAAGAGGACTTACTATTATTACCTTATTTCAGCTCTGGTATAACACATTTAGTTAATGAGCCATTTATAGATTTTTCTCTCGACTTTTGTTATTTTCTCTATATTGGCAAGAGACCATTTAATTTTTGTGCTTTTACTGTCATAACCCAAAGATCTCCCAAATCTGTTGTTTTGCTGCTTTAAACTCATGAACTTGCTGAATTTCTTGACATGATATTTGATGACTGAATTTAGATGTTATTTTGCTATTCCCCTTAGGATCATAACTGGCAACCCATTTTCATTAAATTTGTATGGTTATTATGTAAGACTATAACCTAACCAAACCCATGCGTGCACTGCAAACTGCTGACACTGCTAATGCCAATTTCGGTTAATCTATTGATGGCCTGCTAATACAGACACTGATCAGATCATCTCTGTGACTCAGCCCAGCAACAGTGACTGCAGTGCTGGAGCACTAGAACAGCCTAcaacagcgttgtgaagaagtgACTTTCCCAACTAATCAGGCCCCATCCCAGACGTTGAGGCAGCAGAAGTACTAAAAGCAAAGGGATTTTGTTCACAGGGGACTATAAAAGAGAGGTCGACTCCCCGAGGTGAGTTGTAATGTTGGCATGGTAGGCAGGCAGTAAAAACCAAACATTGAGATCATGTCAGACACATTGCTTGTGTTCTCATGTCATTAAAGAGGCACTTCACCATGTGACATCAGGAGTCATTTTCTTAGTcatcttttcttttctttttactaCAGAACGCTGTTACTGTACGGTGCTAAAGGGAATGAATATGTGAGGTGAGGTACAAAAGTAGTGAAGCGTCCCTTTTTAAGGTCTGTTAAACAGAAAGTATTGTAGTTTTTGTTACATGG
>XM_021589885.2
TAACAGACTTGACTGTTGACGAATGAAAAGCCTATTCCGTTTCGTGGATTGTTGGTTTCACCAATAGGGGGTTTGTAGTAATAAGTCCTCCGACGAAGGTAGGCGTGTTAAGTGAACTGAACGGGACAGCTCTACAGAGAAAGACTCGCAGAGACCGAGGAACACAAACCCGCTTCTGTTGACACCCTTGGGGGGGgacaacatctcaacatcaagaaTACGGCATTGAGGTTGCATGCagagtatattatagtatgaaaCATCATTTGGACCTGAGTGTGTTTCCTACTGCACAACCAGGGTTTTAACAGACACTCGTTCGCTCTGTAATTGACAATTCCATTACATTTTTATGTAGTATTTTCTAAACCTGGAATGACCTGTTCTTACTGGATTGTTTGATGGGGCTTCTAAGAATCATGATACCGCCCAAGTTTCAGCTTCTGGCGCTGTTGACATTCGCAGTGGCCATGTTCTTCTTGGAGAACCAAATCCAGAAGCTGGAGGAGTCTCGAGGAAAGCTAGAACGGGCCATCGCGAGGCACGAGGTGCGTGAGATCGAGCAGCGGCACACACAGGATGGCCTACGGGAGCGGGAGGCCCCCTCGGTGGCCGACAGCGAGGACGTGGTGGTTATCTACAACCGCGTGCCCAAGACGGCCAGTACCTCCTTCACCAACATCGCCTACGACCTGTGTGGCAAGAACCACTACCACGTGCTGCACATCAACACCACCAAGAACAACCCGGTCATGTCCATGCAGGACCAGGTGCGGTTTGTGAAAAACGTGACAGAGTGGAGGGAGATGAAGCCGGCGTTCTACCACGGTCACGTTTCTTTCCTGGACTTTACAAAGTTTGGAGTAAAGAAGAAGCCCGTCTACATCAATGTGATCCGCGACCCCATCGAGCGCCTGGTGTCCTACTACTACTTCCTGCGTTTTGGGGACGACTACCGGCCCGGCCTGCGGCGCCGGAAACAGGGGGATAAGAAGACCTTTGATGAGTGTGTGTCGGCGGGAGGCTCAGACTGCGCCCCGGAAAAGCTGTGGCTGCAGATCCCCTTCTTCTGTGGTCACTACTCTGAGTGCTGGAATGTGGGCAGTCACTGGGCCCTGGAGCAGGCCAAGTATAACCTGGTCAATGAGTACCTGCTGGTGGGGGTGACAGAGGAACTGGAGGACTTTGTTATGATGCTGGAGGCGGCGCTGCCACGCTTCTTCAGGGGCGCCACAGAGCTCTACAGAACAGGGAAGAAATCCCATCTGAGGAAGACGAGTGAGAAGAAGCCGCCGACCAAGGAGTCCATCGCCAAGCTGCAGCAGTCGGCCATCTGGAAGATGGAGAACGAGTTCTACGAGTTTGCCCTGGAGCAGTTCCAATTTGTCCGGGCTCACGCCGTCCGGGAGAAGGATGGGGAACTCTACCTGCTGGCCCAGAACTTCTTCTACGAGAAGATCTACCCCAAAACTAACTAACTAATGCACATGGAAGATGGACCATTCATCTAGGCTTCATCCCGTAGTCACATACActggacagaggagaagaggaagactAATATAATCAGTGGGTCTGTGGAACTGTCTGTGTTGGACGTTAGTCAGCAGTTTCTGAATGTCGCCCACTTAACTAActgactcctcctcctcgtctccaTAGTAGCCGACAGAACTAGGAAGTGGCCTCTTCCTGGTGCGAGATCATGCCAATAGGTCATGTTCCCACCAGCATTCCAGGTCCAGGACTCCCTTTATACTTCCAGGTGAAAGGTCACAGGAGTGGTATGCTCGACGGACACATGACAGGAGACGAGTCTACTTGGCAGCTGCCCATGTTCTCTTTCTTCTGATCACATGATTTATATTTTCCGTCCAAGGGGAGGGGTTTTATTGGCCGTGTTCTGTTTGGTTTAGTTTTTGTGGTTTATTCTACTTTACTATCATCGTCTATGGGAACATTGTCGACCCAGTTTTATACGTTAAGAGGGTGTCATTTTTAATGTTGTAACCCTCCCACTAATAACTTAAAAGTTGACTACTATGTTATCTTGGAGTTTACCTATATGAACTGCAGACATTTTTCCAAAATCTAAATCCTGTGACCTCCATAGACTTGAGTGACAGATGCACCCTGTTCACGACTGTGGTACTACTATTTAGTGTTtgatactatactatacttaTTTAGTTGTTTTCTGACTCTTTCACCCGGTTGGAATATTGCTAGGAGGAATGTGAAGTGTTTGCACATGATTTAATTAAACTAAGGAAGAAGACAGACAACCGACCATTTAGCTGCTGTACAAAATACTAATTTAAATCTGGATCAAACAGTTATTCTATATCAAGAGGACTTACTATTATTACCTTATTTCAGCTCTGGTATAACACATTTAGTTAATGAGCCATTTATAGATTTTTCTCTCGACTTTTGTTATTTTCTCTATATTGGCAAGAGACCATTTAATTTTTGTGCTTTTACTGTCATAACCCAAAGATCTCCCAAATCTGTTGTTTTGCTGCTTTAAACTCATGAACTTGCTGAATTTCTTGACATGATATTTGATGACTGAATTTAGATGTTATTTTGCTATTCCCCTTAGGATCATAACTGGCAACCCATTTTCATTAAATTTGTATGGTTATTATGTAAGACTATAACCTAACCAAACCCATGCGTGCACTGCAAACTGCTGACACTGCTAATGCCAATTTCGGTTAATCTATTGATGGCCTGCTAATACAGACACTGATCAGATCATCTCTGTGACTCAGCCCAGCAACAGTGACTGCAGTGCTGGAGCACTAGAACAGCCTAcaacagcgttgtgaagaagtgACTTTCCCAACTAATCAGGCCCCATCCCAGACGTTGAGGCAGCAGAAGTACTAAAAGCAAAGGGATTTTGTTCACAGGGGACTATAAAAGAGAGGTCGACTCCCCGAGGTGAGTTGTAATGTTGGCATGGTAGGCAGGCAGTAAAAACCAAACATTGAGATCATGTCAGACACATTGCTTGTGTTCTCATGTCATTAAAGAGGCACTTCACCATGTGACATCAGGAGTCATTTTCTTAGTcatcttttcttttctttttactaCAGAACGCTGTTACTGTACGGTGCTAAAGGGAATGAATATGTGAGGTGAGGTACAAAAGTAGTGAAGCGTCCCTTTTTAAGGTCTGTTAAACAGAAAGTATTGTAGTTTTTGTTACATGG

Function

NR:

description
heparan sulfate 2-O-sulfotransferase 1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K02513 HS2ST1; heparan sulfate 2-O-sulfotransferase HS2ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589886.2 False 2832 mRNA 0.47 7 31471294 31479415
XM_021589885.2 True 3224 mRNA 0.46 7 31471294 31490838

Neighbor

gene id symbol gene type direction distance location
LOC110508219 LOC106598894 coding downstream 4847 31433122 ~ 31466447 (-)
LOC110508955 lrrc8d coding downstream 52204 31411807 ~ 31419090 (-)
znf326 znf326 coding downstream 60390 31406699 ~ 31410904 (-)
LOC110508218 LOC106598907 coding downstream 73609 31374369 ~ 31397685 (-)
cdc7 cdc7 coding downstream 101777 31361711 ~ 31369517 (-)
cldn18 LOC106598896 coding upstream 14676 31505514 ~ 31508287 (-)
LOC110508960 LOC106598900 coding upstream 17568 31508406 ~ 31511223 (-)
trnap-ugg-71 NA coding upstream 30663 31521501 ~ 31521572 (-)
stk25b stk25 coding upstream 51920 31542758 ~ 31560379 (-)
trnav-aac-156 NA coding upstream 69888 31560726 ~ 31560798 (-)
G2128307 NA non-coding downstream 2738 31468320 ~ 31468556 (-)
G2128292 NA non-coding downstream 76093 31394854 ~ 31395201 (-)
G2128288 NA non-coding downstream 85859 31385205 ~ 31385435 (-)
G2128266 NA non-coding downstream 99506 31371589 ~ 31371788 (-)
G2128286 NA non-coding upstream 356 31491194 ~ 31494425 (-)
G2128326 NA non-coding upstream 11439 31502277 ~ 31502922 (-)
G2128278 NA non-coding upstream 13226 31504064 ~ 31504876 (-)
G2128330 NA non-coding upstream 20946 31511784 ~ 31512006 (-)
G2128336 NA non-coding upstream 32698 31523536 ~ 31523871 (-)
G2128242 LOC106584167 other downstream 147930 31319283 ~ 31323364 (-)
G2128216 NA other downstream 226602 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 764749 30705085 ~ 30706591 (-)
G2127455 NA other downstream 916107 30553589 ~ 30555187 (-)
G2127177 NA other downstream 1036440 30434435 ~ 30434854 (-)
LOC110508968 LOC106598866 other upstream 220770 31708667 ~ 31761665 (-)
G2128568 NA other upstream 391877 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 532220 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 571211 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 737568 32228406 ~ 32230258 (-)

Expression


Co-expression Network