cldn18 (LOC106598896)


Basic Information

Item Value
gene id cldn18
gene name LOC106598896
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31505514 ~ 31508287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589887.2
TTTATTTGTCAGGGTATATAGACATTACACATGCTCGCCATGCCGTGCTGTTATGGGGTTGTCTTAGCTAAAGTGATTCAGACCTCTTTATTTACTCCTGCCCAACAACGGTTGGCTCAGATGAAAGGTACCTGGTGCACCTATCTCCACTGTGCCCACATCTCTGATGAGAAACCAAGCAGGAGCGTGCACGTGAGCGTGAACGTGCACATGGTCAACTGCCCACGAAACCTCAGCAAccccaccctactccacattAGTTCCACCACCGCCCTTTcgccttccccctctctcacccttctaCATCcctttcctacacacacacacatttcactcACACTTCACACTCAGGAAAGTATGGCCACTGCACTCCAGACGGGTGGATTCGTCCTGGGCCTGCTCGGCGGGGCTGCCATCATCGCCGCCACGGGGATGAACAACTGGAGCGTCAAGGATCGTCAGGGGGACGTGGTGACCTCGGTGTACACCTATAAGGGCCTGTGGCAGAACTGTGAGGTGGGCACCTCAGGCTTCACTGAGTGCCGGCCCCTCTACGGCCTCCTGGGCTTCTCAGGTACCTTTCAGGCAGTGAGAGCACTGATGATTGTGGGCATTGTTCTGGGTGTAATAGGGGCCATGATAGCCCTGTTCTCCCTCAAGTGCCTTAAAATGGGCAGCATGGAAGATTCCTCCAAAGCCAAGATGACCCTTACAGCGGGGGTCATGTTCATCATTGCAGGCATTTGTGCTATTGCTGGAGCTTCAATCTATGCTAACCAAATTGTGGCTAGTTTCATGATGACCACCTACAACCCCAATTATGGAGGAGGGATGGGACAGGGCATAGAGAATGGAGGAAGTATGATGCCGAGGTACACGTTTGGCCCTGCCCTCTTTGTTGCCTGGATAGGTGCAGCTTTGCTCTTATTGGGCGGGATTCTGAAGTGTGTTGCCTTCAGGGGACTACAGCCAGACAAGTCAACAAACTACACAGGAGTTGCTTACAAAGCCTCCCAAGCCCAGAACAGGCCCGTCTATGATGACCACCATGCAGTGGATGGGAAGAGAGACAACCAAAAATATGTATAATTTCTGTTATATTCTGCATCAATAAATTTGATTCTACATTAAGAAGCATGTATTTAAATGTTGCTTCGGAATATAGTGCTTCATTTTCATATACGCTTCCTAGAGTTTCAATACATTTTACTGCATGTTATTTAAAAATGTGTATTCTGTTGCGGTTGATAGTGGGCTCCATTTTATACTGCCAGTAACTGTTTTAGTTTCATGTGGTCTTGGGTAATGTGTTATTGCTATTTTGTCAATAAACCATTCATGTAAAGCTTT

Function

NR:

description
claudin-18-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589887.2 True 1350 mRNA 0.48 5 31505514 31508287

Neighbor

gene id symbol gene type direction distance location
LOC110508958 LOC106598897 coding downstream 14676 31471294 ~ 31490838 (-)
LOC110508219 LOC106598894 coding downstream 39067 31433122 ~ 31466447 (-)
LOC110508955 lrrc8d coding downstream 86424 31411807 ~ 31419090 (-)
znf326 znf326 coding downstream 94610 31406699 ~ 31410904 (-)
LOC110508218 LOC106598907 coding downstream 107829 31374369 ~ 31397685 (-)
LOC110508960 LOC106598900 coding upstream 119 31508406 ~ 31511223 (-)
trnap-ugg-71 NA coding upstream 13214 31521501 ~ 31521572 (-)
stk25b stk25 coding upstream 34471 31542758 ~ 31560379 (-)
trnav-aac-156 NA coding upstream 52439 31560726 ~ 31560798 (-)
thap4 thap4 coding upstream 68591 31576878 ~ 31584196 (-)
G2128278 NA non-coding downstream 638 31504064 ~ 31504876 (-)
G2128326 NA non-coding downstream 2592 31502277 ~ 31502922 (-)
G2128286 NA non-coding downstream 11089 31491194 ~ 31494425 (-)
G2128307 NA non-coding downstream 36958 31468320 ~ 31468556 (-)
G2128292 NA non-coding downstream 110313 31394854 ~ 31395201 (-)
G2128330 NA non-coding upstream 3497 31511784 ~ 31512006 (-)
G2128336 NA non-coding upstream 15249 31523536 ~ 31523871 (-)
G2128341 NA non-coding upstream 33004 31541291 ~ 31541507 (-)
G2128345 NA non-coding upstream 43475 31551762 ~ 31554729 (-)
G2128242 LOC106584167 other downstream 182150 31319283 ~ 31323364 (-)
G2128216 NA other downstream 260822 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 798969 30705085 ~ 30706591 (-)
G2127455 NA other downstream 950327 30553589 ~ 30555187 (-)
G2127177 NA other downstream 1070660 30434435 ~ 30434854 (-)
LOC110508968 LOC106598866 other upstream 203321 31708667 ~ 31761665 (-)
G2128568 NA other upstream 374428 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 514771 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 553762 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 720119 32228406 ~ 32230258 (-)

Expression


Co-expression Network