LOC110508960 (LOC106598900)


Basic Information

Item Value
gene id LOC110508960
gene name LOC106598900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31508406 ~ 31511223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589889.2
TATCCTCCGATTGGCTTGCCTGAGTATGACACTTCTATGATGTTGTCAGGTTGCGCACAGACCTACACAGCTCGATCCATACCTTTGAACTTGGCTACGTTTGGCTCCCATTCACGCGCCTCTTCACATTCTTGAGTTTGCATTGCAGGCAGCTTTCTTTTCTTGAGAAACACACAAGTGATTCAACTCGCATTGGAGCACCAGTTGCCACCGGGTTTAGTCGTGTTTTTTTAACAGAGGCATTTGTATGAACTTTTATCTTTAAACTCTGTTAATTATCCTACCCAATTTGGATAGGCTACGTTTTCTCTCCTGTGCCACATCTCCACACTAAAGGAGCATGAGCAGTTGGTGAGCTGAATACCAACAACTAAATCTATAGATCTTTATAACTTTGGTTGATGTTGATGCGCATTTCACCGTGCGCTATTGAGATGGCAAAACCTTTGGATCACATAAAGAGGCCCATGAACGCTTTCATGGTGTGGTCTCGCGGTCAGAGACGAAAGATGTCACTGGAGAATCCCAAAATGCACAACTCTGAAATCAGCAAAAGACTTGGCGCGGAATGGAAGTTGCTTTCCGAATCAGAGAAGCGACCATACATTGATGAAGCCAAGAGATTGCGCGCGCAACACATGAAAGATCACCCCAACTACAAGTACAGACCTCGGCGCAAACCCAAGAGCTTGCTAAAGAAGGACCGGTTCCTtttcccctttcccttcctcGGGGACGCAGAACATTTGAAAGGATTTTCCACGGAGTCTATTTTGGCTTCCGCTGAGAAAGCTAGAGCCCTTTTACCACCGACATCATCACCATACTCGCTCCTTGACTCAGGTCAATTCAGCACTGGTGCTGTCCAGAGGATCTCAGAAATTCCCCACGCTCTGGCTGCCAACGGCTTGTCCTATGCGCCCTCTTTGGGATACCAGACTGGGGCGTTTGGAAGTTTGGGATGCCCCAGCCAGCACACTCATACTCACCCGTCCTCCACGAACCCGGGGTACGCCTTGCCCTGTAACTGTGGCACCTGGTCGGCAACGGGTTTACAGCCTCAGGTTGCATACATCCTTTTTCCAGGTATGGCCGGCATAGACCCGTACTCCTGTTCACCACATTCAAGTGTGTGACCACATAAAGAAAAAACGCATGTGAATAAAATACATGAATGTTCACATCATAACTGTCAAAATAGTTTTGCTGTTGTCTCACATCAAGGTGAGCGATAGGCTATATCTACCACGCACGCGCAACGAGGACCGATTCTGATCATGGTAAAACTGAATATATCTATTTCTTTACTGTAGATAGGTCTAAACGAATTTACATTTTCATTCTTGATTGGTTTTCCTTATTTATGTGGATTTTTCGTTCTGTATTTATGTTGTGTTTACTTCGTTAACTTTATGATGATATGGCAATATCTGGGGAAATATGATTTAGGTTATTTTGGCATTTCAAAAAAGGCTGTTACCAAACTTTAAATCTAAATTGTCAATATGGCTTCAAAAATCTGGATTTGTCTATTGTCAATTAAAAAAGTAGGTTTTTAACAGATCAGACCATATTCCTTGGCAGCTGTTCCTAGCCAGCTACTAATAAGTCAGTTTATCAGAATATGCATAGTAAACGTACCAAGTCAGATAGACCCCAATGAGGTCCATTTTTGTCTTATGAAATTACCACATAAATAAGACTGCATCAAAGTATAATTTTGCAAACGTCATCTCACATGTTCAACCAGTGGCCAGAGGAGGGCAGGATAAACCTGTGAATCAGTGATGATTTCTAACAGAAACAGACTCTTAGTGATGTAAAATGGATGCTTTATGTTAAACTCTAATACAACAGAATAAAGCAGTCAATCGATGTCTCTATGATTACTCATTAAACAAGGATCTGCAAAATAACTGAGCAGTTTATTACAATATAATCAATGAATACCATGATGACCACTGCTACTGTGTTTTGTTGACATGGACATGATCATCTGCATTCAAATTAATCTAGTTGACGTTTATTTATATTCAGTTTCACATTTTACCTCCATAATGGTTAAGGAGGATTGGGGTTGAGTTTACTGATCTTAGAACATCGTTTGAGGTCAACCTCTACCTAGCTTTTAATTTGTTGATGATTTCCATTGGACCACATTTACATTCAAATTCTGAAGCAAAGGAAGTTATTTGTTAAACCACTTATAAAAAATGTATTCCCTGACCACCAAAGACGATTAGCAAAAGCTCTCAAGATTGTGTTACCATGgtattttttatcaataatgTTATTGGTCCATAATGGTCTACCAGTATTGCTTGATGGAATCCAGACTGTTTGGTTTCACTGTATAAAAACATACCCTGTACAACTTTcagtgtgtatatgtctgtgtgtgtgtgtgtatgtgtgtgtgtgtgctctcagtGCTTGAGAGAGGCTTGCGATAAGAGAAGAATGGAAAGTCTCTCCTGCCCAGTTGGATTGTTGACAAAATGATCATGTGATTAAAATTAGTTTCTGCTTGTTCTGAGTGTGAAAAGGAATGAGTCTTACGAAGCATCATATTAAAAGAATTGATGCGGTTACATCAACAAATCATCAACACTAACGTCTGGGTGCCTATACACTCTGGGACTTACCTGATGTCATTACAGGTTGCTGTTCACTCTGAATCATTCGAGTCTCACCTAAAATCACGTCTATAAATCATCTCCATCACCTGTCTGTGAAGTGGGTGCCTCTTAATATGCcgtcctgtctgtctatctatccacctacctacctaactacctacctacctacctacctacct

Function

NR:

description
transcription factor Sox-14-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589889.2 True 2818 mRNA 0.41 1 31508406 31511223

Neighbor

gene id symbol gene type direction distance location
cldn18 LOC106598896 coding downstream 119 31505514 ~ 31508287 (-)
LOC110508958 LOC106598897 coding downstream 17568 31471294 ~ 31490838 (-)
LOC110508219 LOC106598894 coding downstream 41959 31433122 ~ 31466447 (-)
LOC110508955 lrrc8d coding downstream 89316 31411807 ~ 31419090 (-)
znf326 znf326 coding downstream 97502 31406699 ~ 31410904 (-)
trnap-ugg-71 NA coding upstream 10278 31521501 ~ 31521572 (-)
stk25b stk25 coding upstream 31535 31542758 ~ 31560379 (-)
trnav-aac-156 NA coding upstream 49503 31560726 ~ 31560798 (-)
thap4 thap4 coding upstream 65655 31576878 ~ 31584196 (-)
nilt2 nilt2 coding upstream 168200 31679423 ~ 31694153 (-)
G2128278 NA non-coding downstream 3530 31504064 ~ 31504876 (-)
G2128326 NA non-coding downstream 5484 31502277 ~ 31502922 (-)
G2128286 NA non-coding downstream 13981 31491194 ~ 31494425 (-)
G2128307 NA non-coding downstream 39850 31468320 ~ 31468556 (-)
G2128292 NA non-coding downstream 113205 31394854 ~ 31395201 (-)
G2128330 NA non-coding upstream 561 31511784 ~ 31512006 (-)
G2128336 NA non-coding upstream 12313 31523536 ~ 31523871 (-)
G2128341 NA non-coding upstream 30068 31541291 ~ 31541507 (-)
G2128345 NA non-coding upstream 40539 31551762 ~ 31554729 (-)
G2128242 LOC106584167 other downstream 185042 31319283 ~ 31323364 (-)
G2128216 NA other downstream 263714 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 801861 30705085 ~ 30706591 (-)
G2127455 NA other downstream 953219 30553589 ~ 30555187 (-)
G2127177 NA other downstream 1073552 30434435 ~ 30434854 (-)
LOC110508968 LOC106598866 other upstream 200385 31708667 ~ 31761665 (-)
G2128568 NA other upstream 371492 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 511835 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 550826 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 717183 32228406 ~ 32230258 (-)

Expression


Co-expression Network