thap4 (thap4)


Basic Information

Item Value
gene id thap4
gene name thap4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31576878 ~ 31584196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589895.2
AGAACGTCATTAGATATAGCCTCAAATATGTTCTATTTTTTAAGAGCAACGGGGCTGGCAGGATTTCGTTTCTCCCTGTCTCTagcccacactccagtacagtaggttgcggtaatgcaccataacgttggatgccaaccgccgataaaccccacagaagaagATCCATCTGTGAAAAAGGGGGGCGTCAGTAATATGACAGCCTGAGAATAATATTGTCGCAGTATTATATGCACCATTTCACTGCTTCGCGAAAGATTGGTCTTTTCTAACATAATGACATACTTTGAATAAGACAACCTTGCAATGGCGTGCCCTTTTCACCAGTCAGCTGAGCTGAACCCTGCACTGCTGGCATTGGACTGGCTTCTCGGGGTCTGGGAGTCCGATGAGCCAGGAGAGGGCTCCTTCTCCTCCATACCGCCTTTCCGCTACAACGAGAGACTGCACTTCTCCCATGTGGGCCAACCAGTCATCAACTTCATGTTTAATGCATTCCATGCTGAGAATAAGAAACCTATGCACAGGGAGTGTGGCTTCATCAGAATACAACCAGGCGGCAACAGAGTAGCCTTCATTATAGCACAGAACTCAGGCCTGGTGGAGATTGAGGAAGGAGACCTGACTGGACAGCAGTTAACTCTACACACCCATGCCCTGGCCAGAACCTCCTTCGCTAAAGAACCCCATGTACAGCAGaTTTCCAGAGTGTTCCAGCTGAGACCGGATGGGAAGCTTGAGCAGACTGTCTCCATGGCGATGGAGGGTGGGCCACTTATGCAGCATTTGCACATCACCTACCGTCGCTCCTCTTGACCACCAGGAGGTGACGGCGTAATAACAAGCACTAGACTTTGTTAATTTGATTTTCCCGACCCTTAATTAATGCTGATCTAGGTTAGTGTTGTGTTTTCTCCCATTGGGGTTTGGGGAGGATAAACCGATTCTAGATATCACTTGTTACACAAGCAGCTATTTAAGTGTGTTCAGCCCTTAATTTAATGCTACTATAATCAAGTTGTCCTTCTCAGAGGCTATATTGAACCCAATGGATAAGTGGAATAAAAACAAATAATCTAA

Function

symbol description
thap4 Orthologous to human THAP4 (THAP domain containing 4).

NR:

description
THAP domain-containing protein 4

GO: NA

KEGG:

id description
K23205 THAP4; THAP domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589895.2 True 1080 mRNA 0.47 5 31576878 31584196

Neighbor

gene id symbol gene type direction distance location
trnav-aac-156 NA coding downstream 16080 31560726 ~ 31560798 (-)
stk25b stk25 coding downstream 16499 31542758 ~ 31560379 (-)
trnap-ugg-71 NA coding downstream 55306 31521501 ~ 31521572 (-)
LOC110508960 LOC106598900 coding downstream 65655 31508406 ~ 31511223 (-)
cldn18 LOC106598896 coding downstream 68591 31505514 ~ 31508287 (-)
nilt2 nilt2 coding upstream 95227 31679423 ~ 31694153 (-)
LOC110508968 LOC106598866 coding upstream 124471 31708667 ~ 31761665 (-)
nilt3 nilt3 coding upstream 134493 31718689 ~ 31763088 (-)
LOC110508970 LOC106598862 coding upstream 237946 31822142 ~ 31859100 (-)
LOC110508975 LOC106598852 coding upstream 368003 31952199 ~ 31954935 (-)
G2128353 bok non-coding downstream 4865 31570477 ~ 31572013 (-)
G2128345 NA non-coding downstream 22149 31551762 ~ 31554729 (-)
G2128341 NA non-coding downstream 35371 31541291 ~ 31541507 (-)
G2128336 NA non-coding downstream 53007 31523536 ~ 31523871 (-)
G2128385 LOC106568769 non-coding upstream 32172 31616368 ~ 31619525 (-)
G2128386 NA non-coding upstream 35544 31619740 ~ 31620149 (-)
G2128399 NA non-coding upstream 54514 31638710 ~ 31643463 (-)
G2128418 LOC106598876 non-coding upstream 84519 31668715 ~ 31669787 (-)
G2128426 NA non-coding upstream 97066 31681262 ~ 31735545 (-)
G2128242 LOC106584167 other downstream 253514 31319283 ~ 31323364 (-)
G2128216 NA other downstream 332186 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 870333 30705085 ~ 30706591 (-)
G2127455 NA other downstream 1021691 30553589 ~ 30555187 (-)
G2127177 NA other downstream 1142024 30434435 ~ 30434854 (-)
G2128568 NA other upstream 298519 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 438862 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 477853 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 644210 32228406 ~ 32230258 (-)

Expression


Co-expression Network