LOC110508968 (LOC106598866)


Basic Information

Item Value
gene id LOC110508968
gene name LOC106598866
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31708667 ~ 31761665 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966696.1
acttagagtGGTTCTCATACACACTGCAGGAGCAGACCTTCCTGTACTGGGGTGGTAACTGGACGTAGAAGTATTGAGGGGACTGTAGTAAACAGGGTGTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACTGAAGGTTGTCCTCCTCTTAGCTgctgtgtggagtgtgtgttcagCAGAGTTGATCACAGTGGAAGGATATGAGGGGGGCAAGGCAGAGATCAGATGCCCCtatagagaggagtggaggagccaCCAGAAGTACCTCTGTAAAGGGGATTGTCCTGTTTTGAATAAAAACAAAGTTATTAAAACTGAGACAGGGAAAAACAGTGCCTCTAACGGGAGATACTCGCTGAAGGACAACAGAGAGGAAAGTGTCTTCATTGTGACAATCACCAAACTGATGATTAACGATGCTGGGAAATACTGGTGTGGAGTGACGAATTCATTGGCAGATGACTACACCGAAGTCAACCTTACAGTCTCTAGAGGTTCACCAACGCTATCATCCTTAGCCACCTCcatctcatcatcatcatcatccatcTCTCAACTATCATCCATctcaacaccatcatccatctCATCATCAACACAAAATGGATTTGTGGTCATCATAGTATCTGGGACTCTGGTTATGCTGCTATTGGTGCTTGTGGTCAGCCTGCTCATAGTCTATAGATGGAAGTTCAACAAGGAAACAGCTGGCTCCTCAGCACCCAGGGTGAACACAGACACTCGGATCAAcatagagggttgtcatggtgatggtCACTATGAAGAAATAAAGGACCGCCCCCTACCGTCCAGTTCAGGTGGTgtgaccaccaccaccatctactcCACTGCCAACTTACCCACAGGCCGCTCTGACTTCCTCAACTACGCCAGTGTCAACTTCCACAAGATCCCCAGCTGCCCCAATGAGGCCACTGCCGCCATCGCTAAAAAGGGTACTTTTTCTGGTGACTATGCCACCGTCAACATAAGTCAAAACCCTGCCTACTCTACTGTCATTCATCCacacagctcctcctcctcctctactccacaGTGAGCAAATCCAGAGACACCTGAGTCACTGACAACCAATCACAAGGGAGAAAAAACACACTGGCAACCAATCACAAGAAACATGTCATGAACTACGTTTGCCACTAACAGCCTCTTGAACATTGAGCTCTGTTTTTAGCTGACAGCTAGATAATGTGCTTCATGTCCTCACAATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCGTGATATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCACCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTACATCAGATGTGTTTCCCAGACTTCTCTCTTCCATCAGATGTGTTTCCCAGACTTCTCTCTTCCAGATGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGtgcttccctgatgtctctctTCAACTTGTCTTCATGTCATTTAATTGCATGTTAATATCTGCAGATAAATATTGTCTCACTATTTGGCAAGCACTTAAAAAGGTATCACACCTTTTGACCAAGGCATTATAACTGTCTATTAACtgtgttttttttacacatttgtaAATGATTAAATAAGCATTAATGATGTCTTGATAAACTCCTGATAAAGGGTGCCTTTAAAAACAGCCCTTTTAGCTTGGCCTTTAACCAGTGATTGTTTTAGACgtcctgtgtgttttatgttcTTTAATTTATCCTTTTTACTGCTTCCTGTTTGCTTCTACTTTTTCATTTGATTGTTTTATTGTGAATTGTGTTGCGATTGTAAATGCAATTTAAATTAAAGGGGAAGTGCAGTTAAAAA
>TU2433552
aaacagcactttcACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATGATATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTCCATCAGATGTGTTTCCCTGACTTCTCTCTTC
>TU2433533
GGGTTCTCATGCACACTGCAGGAGCAGACCTTCCTGTACTGGGGGGGTACCTGGACGTAGAGGTATTGAGGGTACTGGAGTAAACAGGATGTACAGGGTCTAAAGAGACTTGAACTAGCTGGGAGCCACAAGTCATCATGGTTATCCTGCTGGTCCTCACACTGAAGGTTGTCCTCCTCTTAGGATGACAAAGGGGTCAGAGTCTTCATTGTGACCATCACCAACCTGATGTCAGATGATGCTGGAACATACTGGTGTGGAGTGGAACGATTTGGACTGGACCCTGAAGTGTATGGAGATACATCAGTGGTCATCATAGTATCTGGGACTCAGGTCATGCTGCTATTGGTGCTTGTGGTCAGCCTGTTCATAGTCTATAGATGGAAATGCAACAAGGAAACAGCTGGCTCCTCAGCACCCAGGGTGAACACAGACACTCGGATCAAcatagagggttgtcatggtgatggtCACTATGAAGAAATAAAGGACCGCCCCCTACCGTCCAGTTCAGGTGGTgtgaccaccacc

Function

NR:

description
short NILT4 leukocyte receptor precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966696.1 False 3815 mRNA 0.45 6 31708667 31715814
TU2433552 False 304 lncRNA 0.44 2 31710290 31761665
TU2433533 True 531 TUCP 0.50 5 31711608 31737492

Neighbor

gene id symbol gene type direction distance location
nilt2 nilt2 coding downstream 14514 31679423 ~ 31694153 (-)
thap4 thap4 coding downstream 124471 31576878 ~ 31584196 (-)
trnav-aac-156 NA coding downstream 147869 31560726 ~ 31560798 (-)
stk25b stk25 coding downstream 148288 31542758 ~ 31560379 (-)
trnap-ugg-71 NA coding downstream 187095 31521501 ~ 31521572 (-)
nilt3 nilt3 coding upstream 2875 31718689 ~ 31763088 (-)
LOC110508970 LOC106598862 coding upstream 106328 31822142 ~ 31859100 (-)
LOC110508975 LOC106598852 coding upstream 236385 31952199 ~ 31954935 (-)
LOC110508977 NA coding upstream 244687 31958284 ~ 31967067 (-)
LOC110508978 NA coding upstream 285441 32001255 ~ 32014890 (-)
G2128418 LOC106598876 non-coding downstream 38880 31668715 ~ 31669787 (-)
G2128399 NA non-coding downstream 65204 31638710 ~ 31643463 (-)
G2128386 NA non-coding downstream 88518 31619740 ~ 31620149 (-)
G2128385 LOC106568769 non-coding downstream 89142 31616368 ~ 31619525 (-)
G2128316 bok non-coding downstream 115496 31573484 ~ 31593171 (-)
G2128436 NA non-coding upstream 4327 31720141 ~ 31723636 (-)
G2128440 NA non-coding upstream 27181 31742995 ~ 31749753 (-)
G2128522 NA non-coding upstream 56009 31771823 ~ 31772793 (-)
G2128524 NA non-coding upstream 57607 31773421 ~ 31773659 (-)
G2128536 LOC106598864 non-coding upstream 79619 31795433 ~ 31801315 (-)
G2128242 LOC106584167 other downstream 385303 31319283 ~ 31323364 (-)
G2128216 NA other downstream 463975 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 1002122 30705085 ~ 30706591 (-)
G2127455 NA other downstream 1153480 30553589 ~ 30555187 (-)
G2127177 NA other downstream 1273813 30434435 ~ 30434854 (-)
G2128568 NA other upstream 166901 31882715 ~ 31883140 (-)
LOC110508982 NA other upstream 307244 32023057 ~ 32029225 (-)
asip2b agrp2 other upstream 346235 32062049 ~ 32187519 (-)
LOC110508997 NA other upstream 512592 32228406 ~ 32230258 (-)
G2130393 NA other upstream 1682733 33398547 ~ 33399084 (-)
G2128556 NA non-coding upstream 115727 31877392 ~ 31879509 (-)
G2128569 NA non-coding upstream 121914 31883579 ~ 31884197 (-)

Expression


Co-expression Network