LOC110508975 (LOC106598852)


Basic Information

Item Value
gene id LOC110508975
gene name LOC106598852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31952199 ~ 31954935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589911.2
CCTAATGTAGGTATGTTGTGGGTGGATTTGCACAGTGTTGGACTCAGTTGGACTCAGCCCTCAAATCCACAAGGGAACTTATTTCCTCTGCTTTCTGGGAATTCTAAACAAAGATACAAAACACAGTGAATTATGTGGAAAGACTTTGGTTCCATGTTATGGCTGATGCTCCACCTCTCTTACCAAGGGAACACTTCCGACATAAATTGTCCTCCCAGATGCCAGTGTTTCACGCCAACTAAGGTGATGTGTTCTGAGGAGAGCATGAGAAGCATGCCCATGAACATCTCCACACAGGTGAAGGAGTTGGTCATTATGACGACGGGAATGACGCACCTGGGCTCGATCACGATGCAGTACAGCCGCCATCTCACCAAGCTGGTCTTCTTCAACAATTTGCTGCAGGATGTCTCCACCATGGCCTTTGATCGCTTGACCGGGCTCGAGGAGCTGGAGATCAGCGGCAACTCTTGGCTGGATTGTTTGAACCCAGGTACTTTCAGCAAACAGAGAAACCTCACCAAACTTTTGCTCAACTTCAACAGGTTCAAGTCACTGAATGACAGCCTCTTCAGTTCGCTTCAGAAGCTGAGGACTCTTCAGCTGAAGGGCAACATCATCTCCCACCTGCCCAGGCAGCTCTTCCAGAACCTGAGTATTCACGCTCTTGACCTGTCCCTGAACATGCTCACAAGGGTGGACAATGAGCTCCTCAGCGGCTTGTCCCAGCTAGAGTCCCTCAAACTGGGCTACAATATGATCAATGTCCTCTTGCCCGACACTTTCCACAACATCTCCCACGTGAAAGAGCTTTGCCTGCAGGGAAACCAGATATCTTACCTCCCTCAGGGTGTCTTTTCACATTTACAGAAACTAGAGGAGCTGAACCTTCGCAGCAACTTGATCACAAATGTGAGCTCTGGAACCTTTCCCGTTGGCTTGAAAGAGCTGGATCTCAAAGGCAACAGGCTGGTTCAGCTTTCGCCTGACTCATTCGGCCATCTAACCAGTCTCACACACCTGTTTCTGTCAATGAACCAGCTCACTAATCTTCCAGAGGATGTCTTTCGGAACCTGACGGgcctgcaaaacctggacctctCGGAGAACCAGCTCACATCGCTGCCGGGAACTATCTTCCAAGATCTCACAAATATTGAAATCGTCCACCTGCAGAATAAcaacctgagctctctggaggcCATGCTGTTTGAGGACCAGGCCTTCTTGGAGCAGCTGTACCTCTCAGAGAACAACCTCCAGACCCTTCCTCAGGGCTTCTTTGACGCGTTCTTACACGAGAACGTGATGAGACTGCGCAGGAACCCCTGGAGCTGCGACTGCCACATGCTATATCTGTATGACTATGTGTCGGAGCACGGTCACTTGGTGGAGGACCTGAGTAATGTGTATTGTAAAGGCCCTGAGCCTTTGAGAGGACAGGGTCTGGTCTCCTTAGAGAGGGACCAGCTGGTGTGTCCAGGAAATTTATCTTCTATAGACAAAGCCACCCCCTTCCAAGGCTTGGAAGAGAAACCAAACCCTAGCAAGTGTACTGTCCAGTTCATCAACGACAACATGACTATCAAGTGCAAAGTGACTAAATGTTCCCCATTGAGACTTATGGTGCATTTCAAAGAAGGGGACGGCACCACGACTGAGTACATTATGAAAAAGGACTGGGCAGAATCTTCACAGTGTAGCAATGGGACTATAACTCTCACTGTGTGAATGGTGTTCATCAGCACATGGGCTGAAGCTTTGTAATAACTTCTCTATGCAGATTGGATTTTTTTTATCCATCTACGTACATCAAACACACAATATTTTATATACCAACATACTGTATATGAGATGAGAGTGAATTCCACCTGAATTTCATTTAATTTTGAAGGTATTGGCTTTGAATAATTTATAATATGATGTCTTGCAGACACAAGCAGTATTGGTATGGGCTTAAACAAATCTCTCCTACTGCCAATGTCAATATTGTACAGACTTAACTCAACTCAAAACTGATAACCAGGCTGACGGTGTTTCCCACTCATAGCTGAGAGATAAGAGAGGTGGATGAACTATCCCTTGCGAGGTTCAAAGTTCATCCCTAATGTTCTAGAGACTATGTAATGAACATAGTACCATCCACTCAATCATATACTAACAGACATATCTACTGCAATGTATGCTCTTGCCAGCAGATGACTCTATTCCTCCATTGACTCGTGCTTTCGGCACCTCTGTCACTTGTAGATTCTCAAACATCAACACACATGTTTAGATGTAGTAGATGGTAACTCTGTTGATATGGAACAACAAATTCACATATAGCTTTCAACCACCCCAGCAATGaactttgttgttttgtgtagTTGATTAGTCTTAATTCATTAAACTGACAATCTGTATATGGCTAA

Function

NR:

description
carboxypeptidase N subunit 2-like

GO: NA

KEGG:

id description
K13023 CPN2; carboxypeptidase N regulatory subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589911.2 True 2414 mRNA 0.46 2 31952199 31954935

Neighbor

gene id symbol gene type direction distance location
LOC110508970 LOC106598862 coding downstream 93099 31822142 ~ 31859100 (-)
nilt3 nilt3 coding downstream 189111 31718689 ~ 31763088 (-)
LOC110508968 LOC106598866 coding downstream 236385 31708667 ~ 31761665 (-)
nilt2 nilt2 coding downstream 258046 31679423 ~ 31694153 (-)
thap4 thap4 coding downstream 368003 31576878 ~ 31584196 (-)
LOC110508977 NA coding upstream 5566 31958284 ~ 31967067 (-)
LOC110508978 NA coding upstream 46320 32001255 ~ 32014890 (-)
LOC110508982 NA coding upstream 68122 32023057 ~ 32029225 (-)
LOC110508983 LOC106598841 coding upstream 79888 32034823 ~ 32063453 (-)
LOC110508985 LOC106598838 coding upstream 120036 32074971 ~ 32087594 (-)
G2128608 LOC106599183 non-coding downstream 16555 31935028 ~ 31935644 (-)
G2128580 NA non-coding downstream 29507 31922092 ~ 31922692 (-)
G2128581 NA non-coding downstream 30463 31921258 ~ 31921736 (-)
G2128579 NA non-coding downstream 31074 31918016 ~ 31921125 (-)
G2128593 NA non-coding downstream 41641 31909472 ~ 31910558 (-)
asip2b agrp2 non-coding upstream 202097 32062049 ~ 32187519 (-)
LOC110508996 NA non-coding upstream 285947 32240882 ~ 32243585 (-)
G2128568 NA other downstream 69059 31882715 ~ 31883140 (-)
G2128242 LOC106584167 other downstream 628835 31319283 ~ 31323364 (-)
G2128216 NA other downstream 707507 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 1245654 30705085 ~ 30706591 (-)
LOC110508997 NA other upstream 273471 32228406 ~ 32230258 (-)
G2130393 NA other upstream 1443612 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 2085271 34040206 ~ 34066665 (-)

Expression


Co-expression Network