LOC110508977


Basic Information

Item Value
gene id LOC110508977
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 31958284 ~ 31967067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471379.2
TTTATCCTAAATGCCAACACTCTCCGGTTTTCCAGTCACGTGTGAAGTGTTCATTAGAGGTCACGTTAGGTGAGCGTTGAGGAATACGAACAGTCCGTGAAGCTCGGATCATCAGACTTTAAAGTGTTAATCCAGAAGCAGCGTCACCACAGATTCTTCTTCAGGGAGTCTGCTGCTGTGGAGAGCTTAGGAAATGCTGAACTCGTTGGCGGCTCAGTTTCAGTGGTCTTTTACCTGCAAGGCAATTCCTGGTTATACATACAGCATCTCTGTGGCGGCAGGCATGGTCAGGCAGTGCTGTACCCAGAATAGAGAGTGGCTGGATGGAGGTGGGTCATGTTCAGCACAAAACAGAGGAAAACGGACTTAAATGGAGTGAAACGGG
>TU2434071
AGAAAATACAATGTAAACAAAACTATTTAGGTAAACTCTTACATTAAAAAAATTGCATAAGGGTATAGTAACCACCCAATCCTATTTATTTGTTTGTAATATTCTAACCCACAAATGCACAGTAAAATAAATCACATTTATATTTCagcagtggtagaaaaagtatccatttgtcatacttgagtgaatgtaaagataccttaatagaaaatgactgaagtaagccacccagtaaaatactagttgagtaaaagtctaaaagtatttggaatTAAACCTTATTAAGTATcagaagtaaaagtataaatcatttcaaattgattatattaagcaaactaaATGGCtaaactttatttatttttgatttgtttggaTAGCTAGaggcacaccccaacactcagaagcatttgtgtttagtgagtccgcctgAGCAGAGGCagtaggatgaccagggattttctcttgataagtgtgtgaattggaccattttcctgtcacgCCAAGCAtaaaaaatgtaacgagtacttttgggtgtctaTATGGAGtacaaagtacattattttctttaggaatgtagtgaagtaaaagttgtcaaaaatataaatagtaaagtacagataccccaaaaaacgacttaagtagtacttcaaagtattttttacttaagtactttacaccactgtatttCAGTGCATTTTTGAGAAGATACTGCTCACAGCATTAGCAAGCtacagtgaattcggaaagtattcagaccccttttccacattttgttacattaccgcTTTTTATGGATTAAAATCCCCccaaaatcctcagcaatctacacacaataccccataatggcaaagcggaaacaggtttttagaaatgtttgcaaatgtaacaaaagtaaaaacagaaatatcttatttacataagtaatcagaccctttgctatgagaaattgagctcaggtgcatcctgtttccattgatcatccttgagagttttctacaacttgattggagtccacctgtggtaaattcaattgattggacatgatttggaaaggctcctgtctatagaaggtcccacaATTGGCAGCGCATGTCCGAgcaaaaaaaccaagccatgaggtcaaaagaaTTGTCTGTAGAACTGCGAgagaggattgtgttgaggcacagttctggtgaagggtacccaaaataattctgcagcattgaaggtccccaagaacacagtagcctccgttattcttaaatggaagaagtttggaaccaccaagactcttcctagagctggctgccaggccaaactgagcaatcgggggagaagggctcagaccatgagaaacaagatgctctggtctgatgaaagcacgatttaactctttggcctgaatgccaagcgtcacgtctggagttaacctgtcaccatccctacggtgaagcatggtggtggcagcatcatactgtggggacgtttgtcagcagcagggactaggagactagtcaggatttagggaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgctccagagcggtcagcacctcagactggggcgaaggtttaccttccaatgaatgtccttgagtggcccagccagagcctggacatgaacttgattgaacatctctggagagacctgacagtagctgtgcagcaacactccccatccaacctgacagaactttttatttaacctttatttaactaggcaagtccgttaagaacatattcttatttacaatgacggccttacGGAAGGCAAAAGGCAACCAGCgtggacgggggctgggatttaatTATacttttaaatttatttttaatataggtcaaaacacacatcacgacaggagagacaccacaacactacataaagcgaGACCTacgacaacaacatagcatggcagcaacacatgaaaacacagcatgatagcaacacaacatgtcaacaacatggtagcaacacaacatggcagcagcacaacatggtacgaacattattgggcacagacaacagcacaaagggcaggaaggtgagacaacaatacatcacatgaagcagccacaactgtcagtaagagtgtccatgattgagtctttgaatgaagagatggaaataaaactgtccagtttgagtgtttgttgtagctcgttccagtcactagctgaagcaaactgaaaagacgagcaacccagggatgtgtgtgcttcggggacctttaacagaatgtgactatCAGAATGGGTGTTGAATGTGgaagatgagggctgcagtagatatctcagacaggggggggggggggggggggggcaatttaataaattttagaataaggctgtaatgtcacaaaacgtggaaaaagtcaaggggtctaaatactttccgaatgcactgtacatctcaaactacacacaaatactattttcacactactgagccgaaCTAAGTGGGGCCGAGCTGAACAGTGCTGTCCTCGTTACgcatccaccatagttgctggaatCATGAACGGTGTGGAAAGAAAACATCAGAGCCAGCACAGTGCAGTTTGGGTTGAATCGATAGTGTGAAAATAGTAATAGAGTACTGTATGTATGCATCATGGATATATTGCTTGCTAGTGGAGTGTCTCACAGTAAAACAACCAGAAATGAAAATAACAGAAATCATGAATCAAACCAAACCAACCATCAAATCAACAAAAATAACCCCAGCTTTGACCCTAGGCAGTGCTGTACCCAGAATAGAGAGTGGCTGGATGGAGGTGGGTCATGTTCAGCACAAAACAGAGGAAAACGGACTTAAATGGAGTGAAACGGGAAGGCACTACCTGACCAGCTCTAGACGTAGTCTCTGCCTGGTGGGGCAGCGGAGCGGTTCGGGGGGTAGCGGGAGGACTTTCCTGAGCCTTCACTGGAGCAGTTGCAACAGAGGAAGGCTCCACCTATGATGGTGAAGCAAGCAGAGCCCCAACCTACGAACAGGGCCTTGCCAAACTCATACCTGCAAATAGACATTTCAATAACAATATCAATCAAGAACTAAACATTGATTATGCCAGACAGGTGGTACACTTCATGCCCACCATGGCCACCAGGATCGCAATGCCAGCCAACAGGATGGCACCCACCATGAGACCTCGTGTGCCCTGCACCATCCCTGGGAGCAAGAGAAAGGCCAGAAgacacaatcaatcaatcatagaATTTCATATTTGAGCTTTAATGATTATGTCATTACTATGCCATTACATGTTATTACATACGTCATAGGGCCTACATATAGCCTAGCTCCTGAATAACGTCAGATTGCCTAGAGAATATTATATTATCAATGTATTCAGAGTTAATACAATTATAATAGAAAAGGGATAATTGGGCAGGAATGCAAATGTATTATAGCTTTCATCAccttgaatgtaaaaaaaaatgcaggTTCAATTGACGAGGAAAATGCTGAatgtatattataaactgggtggttccagccGTGAATGCTGAtaggctgaaagccatggtatatcagactgtaaaccacggatatgacaaaacatgtatttttactgctttaattacgttggtaaccagtttataatagcaataaggcacctctggtgtttgtggtatattgccaatataccacggctaaggaatGTATCCAGGCGTTCCGTGTTGTGTTGTGCAtaaaaacagcccttagccgtggtatattggcaatatactaTACTGCATTTTTGCTTTATTAAAACATTCTTCAAACATTTGTTAAGACATTGGATTTTGAATTAATATGGACTTCAGATTTCAATTGTATCAGACAATGGTGCACAATGGGGTTGGGTTTTAAACCTAGTGTAGATGGAGTTCAGGTGTTTTCATCTGTTACCACGGGGAGCAGGCATGATGGTTATCCTTGGCATTCTCAAGGCTTGTCTGTACATGCATGAGATCTTCTGTAGCATTGGGGGATAGGTTTTTAAACCTCACTTAATCTATTGTAGGttaatgtatttttttcaaaGGTAAATGGATCAGATTAATTTAtttcaaatcacatttttttggtcacatacacatatttagcagatgttattgcgggtgtagtgaaatgcttgtgttcctagctccaacagtggagtAGTATCAAGTATTTTATGAACACTTTACAGATGTGGATTAATTTATAGGCCTTCTGGTACTACGTTTTGAACCATGAAAAAAGTATTGATAGGTCGTTTATAATTGTTTTTATAGTACTGTAAAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471379.2 False 385 mRNA 0.49 3 31960501 31967067
TU2434071 True 4294 lncRNA 0.40 3 31958284 31963350

Neighbor

gene id symbol gene type direction distance location
LOC110508975 LOC106598852 coding downstream 5566 31952199 ~ 31954935 (-)
LOC110508970 LOC106598862 coding downstream 101401 31822142 ~ 31859100 (-)
nilt3 nilt3 coding downstream 197413 31718689 ~ 31763088 (-)
LOC110508968 LOC106598866 coding downstream 244687 31708667 ~ 31761665 (-)
nilt2 nilt2 coding downstream 266348 31679423 ~ 31694153 (-)
LOC110508978 NA coding upstream 34188 32001255 ~ 32014890 (-)
LOC110508982 NA coding upstream 55990 32023057 ~ 32029225 (-)
LOC110508983 LOC106598841 coding upstream 67756 32034823 ~ 32063453 (-)
LOC110508985 LOC106598838 coding upstream 107904 32074971 ~ 32087594 (-)
tsen15 tsen15 coding upstream 133236 32100303 ~ 32104711 (-)
G2128608 LOC106599183 non-coding downstream 24857 31935028 ~ 31935644 (-)
G2128580 NA non-coding downstream 37809 31922092 ~ 31922692 (-)
G2128581 NA non-coding downstream 38765 31921258 ~ 31921736 (-)
G2128579 NA non-coding downstream 39376 31918016 ~ 31921125 (-)
G2128593 NA non-coding downstream 49943 31909472 ~ 31910558 (-)
asip2b agrp2 non-coding upstream 189965 32062049 ~ 32187519 (-)
LOC110508996 NA non-coding upstream 273815 32240882 ~ 32243585 (-)
G2129021 NA non-coding upstream 300640 32267707 ~ 32268032 (-)
G2128568 NA other downstream 77361 31882715 ~ 31883140 (-)
G2128242 LOC106584167 other downstream 637137 31319283 ~ 31323364 (-)
G2128216 NA other downstream 715809 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 1253956 30705085 ~ 30706591 (-)
LOC110508997 NA other upstream 261339 32228406 ~ 32230258 (-)
G2130393 NA other upstream 1431480 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 2073139 34040206 ~ 34066665 (-)

Expression


Co-expression Network