LOC110508978


Basic Information

Item Value
gene id LOC110508978
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32001255 ~ 32014890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471380.2
AGATGTGGTCCGGCCCCAGCTGCCATGTGTTGTGGACATGTTTTCAAGTCTGCAACGCACACACACTTGCTTGGCATAGGAGTGAAAATGGACTTCCGTAAAGTTGGTGCAAAGTTCTAACGCATTCAACAATATGGCAAAGAATGGATTACATATAACAAACATACGACATGATGACTGTGACTGGTCTGTGTTTGGTGGATTTGCTGATCGGCAGTGTCGTGGGAACACCCCTACCATATCAGGAACAGAAGGCTGAGGAAGTACGTGACCACTTCAGatggaggacaggagaggtgttTTGTCATGGAGTCCCCTGACTAAAAGACAGGTTTATACAGATGTCTGGGAGAGAGTGGAGTGTTTCTGAGAGGATTGTTTCTgtctttaaaaatgtattatgattgactgggcctggctccccagtgggtgagcctggctccccagtgggtgggcccctgcccagtcatgagaaatccatagattcggacctaatgaatttatttcaattgactgatttccttatatgaactgtaactgtgtaaaatcgttgaaattgttgcatgttgcgtttatatttttgttcagtatacattgaacacatggtttccatattCCATATTCCAAATTCCATTCACTACATtttggccattattatgagctgttcccctcagcagcctcctgtgttgTGCAATGTCCACATGTAGCCTACACCTGTAGGTATATTAGGGAAAGATCTAACAGTGGACATAAGGAGAGACGAGACAACACAAGCCAGTTATAGAAAACTGTGTTGACAGCTGAGCTGACTGAAGACCAGGTAATCAACTGGCAGTTGTTGGTATCGATTCACGGTAACATGTGATCATGGGATTACATGACGTGACAAAACTTCAAGTTGGAAGCTATTTTTGTAGCAAGGTGTTGTAGAAGGTGTGTCTCATGACACACATTCCAGACACGGGTACTTCTTGCTATCTTGGTATAGCTGTGATTTTTTCAGAGAAATATCAGCTAGCTAGTTGGATAGCCAGCTGTAGCTATCCCCAagcaatgctagctagctagcttctgtcAGATTGGCTAAACACAAGGTCAGCGCAGGCTTTAGCCTACACATAGAACTGAATCAGCAGATCATCTTGAGATGGCAGGTCACTCAGGAGGCGACAAGTCTTCAACTTCAGAACTTCTCTCCATAGCAAATTTAGCTCAGCTTTCCTCACTGTCACTAAGTTACTCACTACTAcccttgtttgtttgttgtaaATTAATGGCAAAGACACacccaagaaacacccacatTAAACCACACCCAGAAAGACAACTCTTGTTTGGGATTCAATAATGGCCGCTGCATTTCTTAATGAGCACCGGAAGAAACACATGCAGTTCACCTTTAATGCCTCATGATGCAAGAGGCAGACTGTGACTCAATTAAAATTCATAGTAAATCTGTCAATCCGTTAAACCATAAAAATTACCGATTTTCCCTACGATATATCACATGCTATCCGTATCGAGTGAACTTTTAGCTGTTTTATGtagcaatctgcagttgctacatccatttttggacttgtaaattaattatatgtaccgattgattcttgaagaatataacatattGAACTCATGAACTTAGTTAAACTGTAATATCCCATCAGAATCCAAAATATAAGATAGTTTACTTACTTTtcgcaaataaacactggagtgatagatgtgcagaagatgaatgtgcaagtagagatactggggt
>TU2434092
ATCAGGCGATAGGTGGCTTGTTGTTAGATACTTGTTTTTACTTTTACGCGTAATCCTACCACTAATAATTGTGGACGAACATCGTCAGACCTGACTTTGTTGACTTCGTCACGTTCAGCTATCGACCTGggattttaaaacattttccgtGCGCTTTTGTGTGAAAGTGCGAGTGATTACATTAATTTTGTATTTTGGGGGACTCAATAATGAACGTTATAATCGTTGATGGTTGCGCACGCTAGACTTTGGAAATAGAAAAGCACCACAATGACAAGCAATGTCAAACGTTACGTTCTGAAATTCACTAAAGCATCCCATTTTGGTGGATTTGCTGATCGGCAGTGTCGTGGGAACACCCCTACCATATCAGGAACAGAAGGCTGAGGAAGTACGTGACCACTTCAGatggaggacaggagaggtgttTTGTCATGGAGTCCCCTGACTAAAAGACAGGTTTATACAGATGTCTGGGAGAGAGTGGAGTGTTTCTGAGAGGATTGTTTCTgtctttaaaaatgtattatgattgactgggcctggctccccagtgggtgagcctggctccccagtgggtgggcccctgcccagtcatgagaaatccatagattcggacctaatgaatttatttcaattgactgatttccttatatgaactgtaactgtgtaaaatcgttgaaattgttgcatgttgcgtttatatttttgttcagtatacattgaacacatggtttccatattCCATATTCCAAATTCCATTCACTACATtttggccattattatgagctgttcccctcagcagcctcctgtgttgTGCAATGTCCACATGTAGCCTACACCTGTAGGTATATTAGGGAAAGATCTAACAGTGGACATAAGGAGAGACGAGACAACACAAGCCAGTTATAGAAAACTGTGTTGACAGCTGAGCTGACTGAAGACCAGGTAATCAACTGGCAGTTGTTGGTATCGATTCACGGTAACATGTGATCATGGGATTACATGACGTGACAAAACTTCAAGTTGGAAGCTATTTTTGTAGCAAGGTGTTGTAGAAGGTGTGTCTCATGACACACATTCCAGACACGGGTACTTCTTGCTATCTTGGTATAGCTGTGATTTTTTCAGAGAAATATCAGCTAGCTAGTTGGATAGCCAGCTGTAGCTATCCCCAagcaatgctagctagctagcttctgtcAGATTGGCTAAACACAAGGTCAGCGCAGGCTTTAGCCTACACATAGAACTGAATCAGCAGATCATCTTGAGATGGCAGGTCACTCAGGAGGCGACAAGTCTTCAACTTCAGAACTTCTCTCCATAGCAAATTTAGCTCAGCTTTCCTCACTGTCACTAAGTTACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471380.2 False 1762 mRNA 0.42 3 32001255 32006090
TU2434092 True 1371 lncRNA 0.43 4 32001774 32014890

Neighbor

gene id symbol gene type direction distance location
LOC110508977 NA coding downstream 34188 31958284 ~ 31967067 (-)
LOC110508975 LOC106598852 coding downstream 46320 31952199 ~ 31954935 (-)
LOC110508970 LOC106598862 coding downstream 142155 31822142 ~ 31859100 (-)
nilt3 nilt3 coding downstream 238167 31718689 ~ 31763088 (-)
LOC110508968 LOC106598866 coding downstream 285441 31708667 ~ 31761665 (-)
LOC110508982 NA coding upstream 16967 32023057 ~ 32029225 (-)
LOC110508983 LOC106598841 coding upstream 28733 32034823 ~ 32063453 (-)
LOC110508985 LOC106598838 coding upstream 68881 32074971 ~ 32087594 (-)
tsen15 tsen15 coding upstream 94213 32100303 ~ 32104711 (-)
LOC110508991 LOC106598834 coding upstream 113883 32119973 ~ 32129371 (-)
G2128608 LOC106599183 non-coding downstream 65611 31935028 ~ 31935644 (-)
G2128580 NA non-coding downstream 78563 31922092 ~ 31922692 (-)
G2128581 NA non-coding downstream 79519 31921258 ~ 31921736 (-)
G2128579 NA non-coding downstream 80130 31918016 ~ 31921125 (-)
asip2b agrp2 non-coding upstream 150942 32062049 ~ 32187519 (-)
LOC110508996 NA non-coding upstream 234792 32240882 ~ 32243585 (-)
G2129021 NA non-coding upstream 261617 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 291103 32297193 ~ 32297394 (-)
G2128568 NA other downstream 118115 31882715 ~ 31883140 (-)
G2128242 LOC106584167 other downstream 677891 31319283 ~ 31323364 (-)
G2128216 NA other downstream 756563 31244091 ~ 31244692 (-)
LOC110508928 mrpl34 other downstream 1294710 30705085 ~ 30706591 (-)
LOC110508997 NA other upstream 222316 32228406 ~ 32230258 (-)
G2130393 NA other upstream 1392457 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 2034116 34040206 ~ 34066665 (-)

Expression


Co-expression Network