Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110508980 |
| gene name | bcl6 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 32015146 ~ 32020881 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| bcl6 | Enables several functions, including DNA-binding transcription factor activity; chromatin binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of cell growth; negative regulation of transcription, DNA-templated; and positive regulation of regulatory T cell differentiation. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus; nucleolus; and nucleoplasm. Colocalizes with replication fork. Implicated in B-cell lymphoma and diffuse large B-cell lymphoma. Biomarker of diffuse large B-cell lymphoma. |
| description |
|---|
| B-cell lymphoma 6 protein homolog |
| id | name | namespace |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021589914.2 | True | 3051 | mRNA | 0.49 | 8 | 32015146 | 32020881 |
32,010,000
32,011,000
32,012,000
32,013,000
32,014,000
32,015,000
32,016,000
32,017,000
32,018,000
32,019,000
32,020,000
32,021,000
32,022,000
32,023,000
32,024,000
32,025,000
NC_048592.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cldn1 | LOC106598850 | coding | upstream | 53934 | 31957635 ~ 31961212 (+) |
| LOC110508974 | LOC106599183 | coding | upstream | 79340 | 31933762 ~ 31935806 (+) |
| LOC110508972 | LOC106598853 | coding | upstream | 94198 | 31880157 ~ 31921755 (+) |
| LOC110508971 | LOC100195537 | coding | upstream | 140417 | 31870378 ~ 31874729 (+) |
| LOC110508969 | LOC106598864 | coding | upstream | 211093 | 31794423 ~ 31804053 (+) |
| LOC110508981 | LOC106598847 | coding | downstream | 8708 | 32029589 ~ 32032860 (+) |
| LOC110508984 | NA | coding | downstream | 32350 | 32053231 ~ 32055655 (+) |
| LOC110508986 | LOC106598840 | coding | downstream | 66771 | 32087652 ~ 32098796 (+) |
| si:ch211-13f8.2 | LOC106598837 | coding | downstream | 88889 | 32109770 ~ 32119075 (+) |
| LOC110508995 | LOC106598827 | coding | downstream | 180934 | 32201815 ~ 32223340 (+) |
| G2128614 | NA | non-coding | upstream | 66248 | 31945164 ~ 31948898 (+) |
| G2128456 | NA | non-coding | upstream | 92397 | 31922097 ~ 31922749 (+) |
| G2128516 | NA | non-coding | upstream | 132049 | 31882752 ~ 31883097 (+) |
| G2128653 | NA | non-coding | downstream | 13940 | 32034821 ~ 32037428 (+) |
| G2128680 | NA | non-coding | downstream | 54114 | 32074995 ~ 32075781 (+) |
| G2128693 | NA | non-coding | downstream | 70024 | 32090905 ~ 32091522 (+) |
| G2128668 | LOC106598832 | non-coding | downstream | 136154 | 32157035 ~ 32192779 (+) |
| G2128744 | NA | non-coding | downstream | 165972 | 32186853 ~ 32237899 (+) |
| G2128189 | NA | other | upstream | 275076 | 31739312 ~ 31740070 (+) |
| LOC110508221 | LOC106598877 | other | upstream | 371684 | 31594783 ~ 31643462 (+) |
| G2127299 | LOC106598972 | other | upstream | 1373903 | 30640687 ~ 30641243 (+) |
| kcnn1a | LOC106598974 | other | upstream | 1446568 | 30534338 ~ 30592397 (+) |
| G2128753 | NA | other | downstream | 248437 | 32269318 ~ 32274380 (+) |
| pfn2l | LOC106598797 | other | downstream | 610408 | 32631289 ~ 32700844 (+) |
| G2129371 | crb1 | other | downstream | 728047 | 32748928 ~ 32749568 (+) |
| zbtb41 | zbtb41 | other | downstream | 762987 | 32759166 ~ 32803922 (+) |
