LOC110508984


Basic Information

Item Value
gene id LOC110508984
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32053231 ~ 32055655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471382.2
CTGGACAATACACAAGCTGCATTTGTTTGAGCTTTTTTCTCAATTGGCATTTACTTGGATATTGTACAGATCTCCTTTATATTTTCTCCGTAAAAGCACATGGGCATATGTGAAACGGATAAGCAAATACTTTGGGATTTAGTTCTATAAGTGAAAACTAGTCTTATGGATTTTGTCTAAGGCAACGTTAATAAGTAGTCTAGTCAAGGATGCGATGATAATGCATTATGGGCACTCTACACTTGAGACAGACCAAATAAAAGGAAACAAAAGTAAACCTTGAATTTAGAGGTTTAAAGAATGACTGCCTCTAAAAACCAACTAATCACTTTGGAAACAGCCCATGTGTCATCGATATGAGTGAAACATTTATCCTAGTGttaaaattgactacaaagtgtaaataggatcattttggtcatgAAGTCAATATTGTCTGACACAGAGTTTGGAACCTGAGTGAGTCACAGCAAGTAAATTAAGGTGAGGTTTGGATTACAATTGTCAACAATTCATGCCCCCTTTTGCCAAGCTCCACGTGGAAATCGCTCTTCTGCCCACTTCACTTCCCTTCATTGAATGGGGCTCCGTTGTTTCATCGCCCCCAACGTGTTCAAAACCCCTCTCCGGTTCGACAATGCATGCTTCCAGCAGGATGTACCGCCAACTATGGTTTGTTTGCGTGCTCTGCTGAAGGACCCTACCATGCGGTATAAGTGTTTGGAGTTCGTTGGTCCCCAATGGTGgattGGACGCCCTGCCcatatgtttgacacccctgggttAGAGTGTGGGGCCAAAGGTCGCCGGTTCGAATAcccaagccgacaaggtgaaaaaggTCAATGTGCCCTTCAGCATGGCAATGAACCATAATTTTCTTCAGGGACGCTCTACTACTATggccgaccctgtaaaacaacacacttCACTGCAGCTATCTTGTGTTTGTGACAATAAAacagtattattta
>TU2433827
AGTTTGGAACCTGAGTGAGTCACAGCAAGTAAATTAAGGTGAGGTTTGGATTACAATTGTCAACAATTCATGCCCCCTTTTGCCAAGCTCCACGTGGAAATCGCTCTTCTGCCCACTTCACTTCCCTTCATTGAATGGGGCTCCGTTGTTTCATCGCCCCCAACGTGTTCAAAACCCCTCTCCGGTTCGACAATGCATGCTTCCAGCAGGATGTACCGCCAACTATGGTTTGTTTGCGTGCTCTGCTGAAGGACCCTACCATGCGGTATAAGTGTTTGGAGTTCGTTGGTCCCCAATGGTGgattGGACGCCCTGCCcatatgtttgacacccctgggttAGAGTGTGGGGCCAAAGGTCGCCGGTTCGAATAcccaagccgacaaggtgaaaaaggTCAATGTGCCCTTCAGCATGGCAATGAACCATAATTTTCTTCAGGGACGCTCTACTACTATggccgaccctgtaaaacaacacacttCACTGCAGCTATCTTGTGTTTGTGACAATAAAaca
>TU2433826
GTGGAAATCGCTCTTCTGCCCACTTCACTTCCCTTCATTGAATGGGGCTCCGTTGTTTCATCGCCCCCAACGTGTTCAAAACCCCTCTCCGGTTCGACAATGCATGCTTCCAGCAGGATGTACCGCCAACTATGGTTTGTTTGCGTGCTCTGCTGAAGGACCCTACCATGCGGTATAAGTGTTTGGAGTTCGTTGGTCCCCAATGGTGgattGGACGCCCTGCCcatatgtttgacacccctgggttAGAGTGTGGGGCCAAAGGTCGCCGGTTCGAATAcccaagccgacaaggtgaaaaaggTCAATGTGCCCTTCAGCATGGCAATGAACCATAATTTTCTTCAGGGACGCTCTACTACTATggccgaccctgtaaaacaacacacttCACTGCAGCTATCTTGTGTTTGTGACAATAAAaca
>TU2433828
GTGGAAATCGCTCTTCTGCCCACTTCACTTCCCTTCATTGAATGGGGCTCCGTTGTTTCATCGCCCCCAACGTGTTCAAAACCCCTCTCCGGTTCGACAATGCATGCTTCCAGCAGGATGTACCGCCAACTATGGTTTGTTTGCGTGCTCTGCTGAAGGACCCTACCATGCGGTATAAGTGTTTGGAGTTCGTTGGTCCCCAATGGTGgattGGACGCCCTGCCcatatgtttgacacccctgggttAGAGTGTGGGGCCAAAGGTCGCCGGTTCGAATAcccaagccgacaaggtgaaaaaggTCAATGTGCCCTTCAGCATGGCAATGAACCATAATTTTCTTCAGGGACGCTCTACTACTATggccgaccctgtaaaacaacacacttCACTGCAGCTATCTTGTGTTTGTGACAATAAAacagtattatttatttatttatttatttgggaCGAAACAGTCACATTAGCCCCTGAGGTGCAACCCATGTCCAGGGCACAAATACATATTGGACACAGCTATTGTGGTACTAGCTAACTTATGTCTGACTATAACAGTGTACTACATGGCA
>TU2433832
GTGGAAATCGCTCTTCTGCCCACTTCACTTCCCTTCATTGAATGGGGCTCCGTTGTTTCATCGCCCCCAACGTGTTCAAAACCCCTCTCCGGTTCGACAATGCATGCTTCCAGCAGGATGTACCGCCAACTATGGTTTGTTTGCGTGCTCTGCTGAAGGACCCTACCATGCGGTATAAGTGTTTGGAGTTCGTTGGTCCCCAATGGTGgattGGACGCCCTGCCcatatgtttgacacccctgggttAGAGTGTGGGGCCAAAGGTCGCCGGTTCGAATAcccaagccgacaaggtgaaaaaggTCAATGTGCCCTTCAGCATGGCAATGAACCATAATTTTCTTCAGGGACGCTCTACTACTATggccgaccctgtaaaacaacacacttCACTGCAGCTATCTTGTGTTTGTGACAATAAAacagtattatttatttatttatttatttgggaCGAAACAGTCACATTAGCCCCTGAGGTGCAACCCATGTCCAGGGCACAAATACATATTGGACACAGCTATTGTGGTACTAGCTAACTTATGTCTGACTATAACAGTGTACTACATGGCAGCAACAAACCCAAACCAACTCAGGGCCATAGCGAATATGTCACAGTTGGTTACATAGTGTAATGGCGTCACAGGCCTGACTCCAATCTGGACCCAGTCAGTCTAAATCTCTGAAGCATAAAAGTATCTCCCAAACAAGATTGATATTTCTTGAGCTACATTATGTTAGTAATTAAGGGATGATGATCCTGTTTTTCGGTTAGACAAAGTGCACAGTTGGGTGCCAGGCTGATTCCCTGATCATGAACAGATGCCAGGACCTACCAGAAGGAGGAATGGTGGTATCATAATATGTCAAGCAATGTGATTGCAATGGTTTAGTGATTTCCAAAAATAATTGAATTCACTGTTCACTTGCTATTTTCACAGCTTGTCAGGCAAGACCTCTGAATAAAAGAGTATCATGTGACACAAGTAAACACTCGTGACACCTGTGTTGTTGGCAGAGTCTCCCTCGACTCCCTGTTAATTGAGGTGACTCCCTGTTAATTGAGGtaggtgaatacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471382.2 False 974 mRNA 0.42 2 32053231 32054953
TU2433827 False 519 TUCP 0.49 2 32053676 32054943
TU2433826 False 426 TUCP 0.50 2 32053769 32054943
TU2433828 False 574 TUCP 0.47 2 32053769 32055091
TU2433832 True 1138 TUCP 0.45 2 32053769 32055655

Neighbor

gene id symbol gene type direction distance location
LOC110508981 LOC106598847 coding upstream 20371 32029589 ~ 32032860 (+)
LOC110508980 bcl6 coding upstream 32350 32015146 ~ 32020881 (+)
cldn1 LOC106598850 coding upstream 92019 31957635 ~ 31961212 (+)
LOC110508974 LOC106599183 coding upstream 117425 31933762 ~ 31935806 (+)
LOC110508972 LOC106598853 coding upstream 132283 31880157 ~ 31921755 (+)
LOC110508986 LOC106598840 coding downstream 32699 32087652 ~ 32098796 (+)
si:ch211-13f8.2 LOC106598837 coding downstream 54817 32109770 ~ 32119075 (+)
LOC110508995 LOC106598827 coding downstream 146862 32201815 ~ 32223340 (+)
LOC110508999 NA coding downstream 214262 32269215 ~ 32274380 (+)
LOC118944912 NA coding downstream 215207 32270160 ~ 32270230 (+)
G2128653 NA non-coding upstream 15803 32034821 ~ 32037428 (+)
G2128614 NA non-coding upstream 104333 31945164 ~ 31948898 (+)
G2128456 NA non-coding upstream 130482 31922097 ~ 31922749 (+)
G2128680 NA non-coding downstream 20042 32074995 ~ 32075781 (+)
G2128693 NA non-coding downstream 35952 32090905 ~ 32091522 (+)
G2128668 LOC106598832 non-coding downstream 102082 32157035 ~ 32192779 (+)
G2128744 NA non-coding downstream 131900 32186853 ~ 32237899 (+)
G2128756 NA non-coding downstream 212103 32267056 ~ 32267582 (+)
G2128189 NA other upstream 313161 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 409769 31594783 ~ 31643462 (+)
G2127299 LOC106598972 other upstream 1411988 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 1484653 30534338 ~ 30592397 (+)
G2128753 NA other downstream 214365 32269318 ~ 32274380 (+)
pfn2l LOC106598797 other downstream 576336 32631289 ~ 32700844 (+)
G2129371 crb1 other downstream 693975 32748928 ~ 32749568 (+)
zbtb41 zbtb41 other downstream 728915 32759166 ~ 32803922 (+)
LOC110509024 LOC106598521 other downstream 1003344 33050612 ~ 33070407 (+)

Expression

LOC110508984 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110508984 Expression in each Bioproject

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LOC110508984 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network