tsen15 (tsen15)


Basic Information

Item Value
gene id tsen15
gene name tsen15
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32100303 ~ 32104711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589921.2
GGACCGTTTACATTGCAGTACTTTAGCGTCCTAAATGGGAGTGAGGCACTTTCACAGAGTTCACACGTTGTCAGCATCACAGTGTATGTGTGGGATTTAAAGTGATTTACAAAATATAGACGAGGAAATATGTCGGAGTTGACGAAGAAAACAGACGAGGATGTAATTGAGAAACCACTTCCCCCTAACTGGATTTTACAGCATCCAATGTACCAACATCTGATGAACCTAGATGTTGGAGACAGTGCTCAAGTCCATGCAGCTTTCTTGGTGTACCTGGATCTAGCTGAAGTGCGTCAGTGGAAGGAGGTGAGTGGAGTGGGGTGCTCTGAGCTGCGACTGGTGTTGCtggagggaagggagaaggaaggagagcccaCTCAGATGGTGCTCCCACTACCTGTACACAGAGGCCTGAGCCACAGAAGtgtgcGGTCAGTGCTGGCCAGAGGCTCGCCCATGCTCCTGTGTGTGGTGGCATCTGACTCCAGCCTTGTCTACCAGAGGATGTGTGATGGCctgctgacccctgacccccccGTGGGCATCCAGGACCAGGGCCGCCGGCAACACCGCAAAAGACGCCAGCAACATTGACCCGCAGCAGAACCACAGTGACCGTTGGCAGACCGCTATGGTCTGGTAATGAACTCTGCAGTGACCAGGAGAGAACCACAGACTGAATGGCAGGCGGTTGTGGTCTCGTAATGATGAACCAAAGTGCCAGTGTTTTCCTTAAATTTGGCAGGGCGTGCCTAGCTTCATTGCTCCGTTTCTGAACTGTTTTTGAGACCCTGGGCATAGCGACTTTCTTAAGGCTCAACAGCTAGCCTACATAAAGTATGACAGACCCTGAGAGACTGCGTCAAGAGAAATTTGACAAATATTACAACGGCCATAACTGCCTTTAAAAGGTGCCACAGTCTCTGTGGGCCAGAGGGTTCGTGTTATAGCTTCTCGGACAATTGACAGACAATCAATCAGACACTGGATTGCAGTTGGACATAAAATTGCCAGAGGATACATAAGTTGTATTGAATTAAATCTCCATACAGTACATCCATGAAGCAATACATGCTTATGTAGCAGACTGCCATATCCACAGACACCACTTGAACTGGTTATAGTTACTGTAACACTGTTTTGTTTTGTGCCGACTCCATAcccatttactttcagtgcagttgTGAGTTTTAAACTGTAGAGGGCATGAAAACTACCATGGATGCCTCAATGATATTGCTAGACCATCATTTGACATTGACAGATAGACAACAGTAAACACAATGATGGGTGTGCCTGTGCATTACGAGGTATTAGTAACACCACAAGGACCATATGAGAAACCATTTTGTTTGACAAATGATATTACAGTGACCTGAAAACACGTTATTTTACTAGAAAAACTCTTAATTGAACATTAAAAAACGAACAA

Function

symbol description
tsen15 Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15).

NR:

description
tRNA-splicing endonuclease subunit Sen15

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG:

id description
K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589921.2 True 1435 mRNA 0.46 4 32100303 32104711

Neighbor

gene id symbol gene type direction distance location
LOC110508985 LOC106598838 coding downstream 12709 32074971 ~ 32087594 (-)
LOC110508983 LOC106598841 coding downstream 36850 32034823 ~ 32063453 (-)
LOC110508982 NA coding downstream 71868 32023057 ~ 32029225 (-)
LOC110508978 NA coding downstream 94213 32001255 ~ 32014890 (-)
LOC110508977 NA coding downstream 133236 31958284 ~ 31967067 (-)
LOC110508991 LOC106598834 coding upstream 15262 32119973 ~ 32129371 (-)
asip2b agrp2 coding upstream 52321 32062049 ~ 32187519 (-)
LOC110508994 LOC106598832 coding upstream 87091 32191802 ~ 32201824 (-)
LOC110508997 NA coding upstream 123714 32228406 ~ 32230258 (-)
LOC110508996 NA coding upstream 137081 32240882 ~ 32243585 (-)
G2128608 LOC106599183 non-coding downstream 164659 31935028 ~ 31935644 (-)
G2128580 NA non-coding downstream 177611 31922092 ~ 31922692 (-)
G2129021 NA non-coding upstream 162996 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 192482 32297193 ~ 32297394 (-)
G2129041 NA non-coding upstream 200588 32305299 ~ 32305562 (-)
G2128568 NA other downstream 217163 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 362811 31708667 ~ 31761665 (-)
G2128242 LOC106584167 other downstream 776939 31319283 ~ 31323364 (-)
G2128216 NA other downstream 855611 31244091 ~ 31244692 (-)
G2130393 NA other upstream 1293836 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1935495 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1936727 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1936858 34038788 ~ 34058344 (-)

Expression


Co-expression Network