LOC110508995 (LOC106598827)


Basic Information

Item Value
gene id LOC110508995
gene name LOC106598827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32201815 ~ 32223340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589929.2
TTCAAGAGCTCCTTATTGTAGGTTCACAATAATTATGGAGCAGCAGCACACGGGCTGTGTGAACCTTTGTAGTCTCACGAGCACTCTACCGGTGATCCCCTATCAAAAGCTGACGGACTTGCATTACCTGAGTAAAGGTGGGTTCGGAACCGTGTTCAAGGCACAGCATTGCGATTGGCGGACCACCGTTGCCATCAAGTGTCTGAAATTGGATTCGCCTGTTGGCGAAAGGGAGAGGAATTGCCTACTGAAGGAGGCGGAGGTGCTTCACAAGGCCAGGTTCAACTACATCATCCAAATCTTTGGCGTGTGCAACGAGCCTGAGTTCTTCTGCATCGTCACTGAGTACATGAGCAATGGCTCTCTGGATCAGCTGCTTCACGAGAAGACAGTGTACCCCCTGCTGGCCTGGTCGTTGAGGCTGCGTGTCCTGTACGAGATAGCTCTAGGGGTTAACTTCCTACACAACATGACCCCACCCCTCCTGCACCACGACCTCAAAACGCAGAACATTCTGCTCGACGGAGAGTTTCAtgtcaagATAGCAGATTTTGGCCTGTCTAAGTGGCGTCAGCTATCCATCAGTAAAGGCTCAGGATCCAAGCCACCTGAGATGGGGGGCACCGTCATCTACATGCCACCCGAAGCTTACGAACCCTCCAAGAGCCGCAGGGCAGATGCCAAACACGACATGTACAGTTACGCAATCATTATGTGGGAGGTGCTGGCCAGGAGGATACCATTTGAAGAGGCGACCAACCCCATGCAGATCATGTTCAGCGTGCTGCGGGGGGCACGTCCGGAAACAGGCCTGGACTGTCTGCCAGGGGACATCCCCAGCAGGGAGACACTCATCAACCTCATGACTTTCGGCTGGACCGCTAACCCCGACGAACGGCAATCCTTCCTCCAGTGTGTGATGGAGCTGGAGCCAATGCTGAGGAGGTTCGATGAAATCAACGTCCTGGAGGCCGTGCTGGAGGTCAAGAAGTCAAAGctgatgAGGCGGGCAAGCTGTTACTCTGCCACACCCGTGgtgtgtgagagggggagggaagaggagaagtcTCTGAACATTCTGAAGAACAACCCCAGTCCCTGGCCAGGAAGCTCCACCTCTGGCTCTGGGTCTTGCTCCTCCCAGGACACGGACATCTCCCAACCAAGCTCCCTCACTAGCACCAATGCTCCGCCTTCTAAAGAAGTGTCCCCCTCGTTGTTCATGCCCCACACACTGGAGCCTCCGCAGCCCCTCAGAGAGCCGAGCCAGGGGGACAACAACCTCAACAACTACCCCCAGAGCGCCAGGCCCCTGGATGAGCTCAACATTCCCCTCAAACCAGATCTGCCTGAAACAGAGTGTGTGACGTACCTGGACAACCTCACCCTGAAGCCACAGCCATACCAACCCCAGCCAGACTTCAACCCATCTTCGGATCCCCCCGACCTAACGCTGGGCCCTGTGGCGCGATGGATCGCAGTGCGGCGCGAGGATATCGTTTCCCAGATGACGGAGGCCTGTCTGAACCAGAGCCTGGATGCCCTGCTGGCTCGCTCTCTCCTGATGCTCGAGGACTACGAGCTGGTGGTGAACCGGGCCACGCGTACCGCCAAGGTCCGCCAGCTCCTTGACACCTGCCACCGCCACAGCGAGGACTTCTGCCGCGTGGTGGTCCGCAAGCTCCAGGACAACAAGCAAATGGGCCTGCAGCCGTACCCCCCAGAGCTCAGCTCCCCTGTGGCCGTGCCAAGCCCCAGCGCACCCCCACTCTCTGTGTCCTACAACAACCCTAGGAAATACTAGAACAGAACTAGACTAGAGACTAAACTGTTCCAAGACTTTTAGCTCTTTGAGCTAGGTAGTGGAAGAAGCCTCTACGGTCTGTTAGTCCTGGGttatattcattaggcaccaaatggaagaaaactaactgaaacagggagggactacctaaaCTTGTCCAGTAAGACACTTGTTTTCCTTTGCACattgttttgctacggtgtgcactaGTGAATTACGACCCTGGGTTTTGACTGTGAACTTTGAATTTAGTGTGGTAGGGTCAAGCCCAGCTGTCGTTTCATATTGCTCATCGTGGTACCTACTTTCCTGCCCACTCACACAGGACATTCTCTGTTGCTACTGTTCATTGAACGGAAGGTGCCTAGAAGCTGAGCTTAAGAACTTGAAGGTAAAGATGCCTTTTGGAAAAACAACCAGTATTCACTAAATTTCACCTGTTCTCTGAAAGCAGAGAACTGGTTGGGATTAGCAATCATAATCAAAAACCTGTTAGAATTTAATCCAGGCTTTGAAGAATTATATTATGGATTTTATGTAATTTGACAGGTAAATCATCTCGTTCTCTTGAAGCATTCCCTATATTTTGAGTGATTGGGGTATGGGCCTGAGTTCTGCTTCTATGCATCTTTCTGTTATTGTTGTCCCCCCTTTGCACTGAATGGTTATATccagagacatactgtatatccaGAGAGAGACTGTATAACATCATACTGATCTAAGGCTCTGATTTCACTCTTTTGAGTGGACATTCTAGAACAGGGGTATTGAGCTCTTAcactacgaggtccggagcctgctggttttctgttatTCCTGATCATTAATTTCACCCGCCTGGtgttccaggtctaaatcagtccctgattttaagggggaacaatgaaaaaagaTAGTGggactggcttcgaggtccaaaGTTGAGTTTGAAGGATCTAGACTCTATGGGTCTGGGTGGGACTCAATTACTGTGACTGAAATTCTGTAGTTGACCCTCTGATCCGGGTCTATGTAACTACAGCTGATAGACCAGAGTGGACATAAATGGATCTGACCACGTCTCTGCATTACctagaaatgttttattttacgcTAATAAGGTGAATCTATTGACTTATGGAGAGCCAACATATATAAAGACCTATTTATTAGCCGGAAGATAAACTTGGCTGATTAACATAAATGTGTCACTCTGGTACAATCGGATCTGGTCTAGACCCTGACCCCTTAAGGTATGGGTCCGGTCTACGTCTGGTTGTTCTCGGGTCTGTTCGGGTCCAGATctccctttttttaaatttttttttttaaaggtctgATAAAATACTCGACTGGACTTCTGCCATTTTGAAGTTACTGTAGCTTTGTATCttacaatgtatttttttttttttaacaactgCCTTTTCAAGACAGATTTTATTTATCTTATCAAGGAGCTTGCGTTGACATTGACATAGGATGGGCCAAGTCAGTGGATTTAAGTTTGGTGTGTAGATGTCGCTACTGTAGAGTTAATCCTTGGTCTTCATCTTGACAAGTTTACATATTGTGACAGACACAATAACACTGTAGCCAGAAAGCAGAAAATAAGGTCATGTAGCTAATGTAGATCAGAGTGTACCAGGATCTGTCTGTAGCTATTTTGGTACTCTCCTTGGACTCAATGGTCTCCGTTATGGGTGGTTTTTGTAGACTTGTTTTTTGCGATAGAGGTCATGGCCCATACTTATACAAATCTCTGTTTGCTCTACATGTTTTGGTACAAGACCAGTGAATGGATAGAGCAGGGTTTAGTCATTGAGCCAAGTGCTAAATATAGTAACATGTCCTTCAGCAGCTTAGAGCTGTGGTTGGTTATCCTGCACTTTGACAAAAACATTCAGCCTCAGATTGTGGCACTCTGGGTGTGTGTGATGCTAAAGTAGAGTCAGCCAGAGCTGTTTTTTCCCACCTAAAGTTTCCATCATCTGGGGCTTTAGGCCAGGGGAGGGGATTCCTACAGTAGAAACCGGTCACAGAAGAAGACGCCAGGGAAGCACACTGAAGAGACTGGTGTATGTTTGTCTAAAGTGGGCCAAAGCAAACGGTTTTACGTAGAACACTTAAGCACTTCATGAATTGCATGGACTTCATATTTCATTCAgtgatctatcctcagttttgTCAGCACATGACAGGTCTCGAGTAGCGAAGGGCACTTCCTGGGACACATGACTGGAAATTGAATCGTACTATAGCTTTTATACAAATTTAAATCTATATACCGTAAAGTAATTACACTTTTTAAGGTCACAGTCAAATGTAACTAACTATCTGCGCTAGGTAGGTGGTCATTCTCAGCCTTGAGGTTGTAGTTGGAGCAAGCAGAAGGGCCAACTAAATCTGAGCgctataactagctagctacaatgTACCCTCAATCTTGGCGCTATAGCTAGCTGTCAACAATGCACACTATCGCCTGTAGAAGCCTCAGCAGGGACCCTGTGTTACGACTGTTTCTCACCTTGGATCTCTCCTCTTCTAATACATATCCAGAAATGACTAAGTGCCAAAATACACTGTAGTTAAGCAATTTCCTGATAAAACAACTTTTCCCGTAGTTACCTCACCAtcgtttctgtttctctctctgtcagtgatGTGTGCATGCAATGTCTCCACATAGGGAACCAAGAGCGCCACTAAATCAGAGACGTGTAGTTTCTAGAAGCCTTACCGTCAATGCACTTCCTTAAATGAGTTCTGGAGGCACCGTGGCTAAGTATCATTACCTAGGGTCTGTGCCCCCACAATTGTGACCCTTCAAAATTGAAGAGCACTGGCTGAGGGGTTttagtgtttttttatttattaatctAGGTGTTCTTacctatttttatttgatttgtgcTGCAGAATAAACTACGTTCATTGTTTGCCCACATCATGAGGGTGCTCTTTGTAAGTTTATCAGCTTTTGTTGAATTAGAACATGTGCTGTGTCAGTGGTATAGGGTGGCAACTGGCATGCCAAAGCCAGCCAGGAGAGAAACTCTTCCAAAATCCTCTGGACTTTTACTGCCTTGTTttcaaacatttttgaatataTGAGGCACAGTATTGATCATTTACCACAATTCTTTTCTCACGTGATATTTGCACAAAACTCCAGATGTTATCAAATGACATTTTTTTCTTACATTCCTAATCTTCTTGATATACTTTTGGACAAAATGTTGTATATGTACAACAGTCTTCTTATTGCTCTACTCTATTTATCTTTAGCTGAATTCTTGCCTAGTTCTAAACTATGAGGTGTTAGTTAGAAAAGTGTCTGAAGAAATCATTGTTTACATGGAATTCCTTCAAGCAGCCATCAACATTGCCATATTCAGGGCCAGTGTTCTGTTTTATCCATATACTTGTGTACTTTTTTTTCATATCATTAGCAACAATATTAAATATCCTGTATACATAATGTGTACACTGagaataccaaacattaggaacaccttcctaaaattgagttgcccttttgccctcagaacagcctcaattcgtcagggcatgggcTACAATGTGCCAAGCGTTCCACAGGTATGCTGGCCCATATTAtttccagtgcttcccacagttgtttcaagttggctggatgtccttttggtggtggacccTTATCAATACATACAGGAACCGGTTGAGTGTGAAaagcccagcagcgttgcagttcttgacacaaaccggtgcacctggcacctactaccataccccgttcaaaggcacttaaatacccctctgaatggcacacactcACAATCCAGGTCTCAATCGTCTCCAGgttttaaaatccttctttaacctgtctcctccccttcatccacaCTGATTTTTGAAGggtatttaacaagtgacatcagtaagggatcatagctttcacctggtcagtctgtcatagcaggtattcttaatgttttgtatactcagtgtaatatGTAGCACTGAAGCATCTTTTGGCAGAAGTATAATTCAATATTTACTGTAAATGTATTGCATGATGTTTTTGATACCGTTACGCTTTATTGCTGTGTCATTAAAGTGTGTGATCCTTC

Function

NR:

description
receptor-interacting serine/threonine-protein kinase 2-like

GO: NA

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589929.2 True 5901 mRNA 0.46 11 32201815 32223340

Neighbor

gene id symbol gene type direction distance location
si:ch211-13f8.2 LOC106598837 coding upstream 82740 32109770 ~ 32119075 (+)
LOC110508986 LOC106598840 coding upstream 103019 32087652 ~ 32098796 (+)
LOC110508984 NA coding upstream 146862 32053231 ~ 32055655 (+)
LOC110508981 LOC106598847 coding upstream 168955 32029589 ~ 32032860 (+)
LOC110508980 bcl6 coding upstream 180934 32015146 ~ 32020881 (+)
LOC110508999 NA coding downstream 45875 32269215 ~ 32274380 (+)
LOC118944912 NA coding downstream 46820 32270160 ~ 32270230 (+)
LOC118944913 NA coding downstream 47827 32271167 ~ 32271241 (+)
LOC118944911 NA coding downstream 48254 32271594 ~ 32271664 (+)
LOC118944909 NA coding downstream 48934 32272274 ~ 32272454 (+)
G2128668 LOC106598832 non-coding upstream 9036 32157035 ~ 32192779 (+)
G2128693 NA non-coding upstream 110293 32090905 ~ 32091522 (+)
G2128680 NA non-coding upstream 126034 32074995 ~ 32075781 (+)
G2128653 NA non-coding upstream 164387 32034821 ~ 32037428 (+)
G2128614 NA non-coding upstream 252917 31945164 ~ 31948898 (+)
G2128756 NA non-coding downstream 43716 32267056 ~ 32267582 (+)
G2128792 NA non-coding downstream 44322 32267662 ~ 32267975 (+)
G2128753 NA non-coding downstream 45978 32269318 ~ 32274380 (+)
G2128806 NA non-coding downstream 69734 32293074 ~ 32293316 (+)
G2128807 NA non-coding downstream 73452 32296792 ~ 32297047 (+)
G2128189 NA other upstream 461745 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 558353 31594783 ~ 31643462 (+)
G2127299 LOC106598972 other upstream 1560572 30640687 ~ 30641243 (+)
pfn2l LOC106598797 other downstream 407949 32631289 ~ 32700844 (+)
G2129371 crb1 other downstream 525588 32748928 ~ 32749568 (+)
zbtb41 zbtb41 other downstream 560528 32759166 ~ 32803922 (+)
LOC110509024 LOC106598521 other downstream 834957 33050612 ~ 33070407 (+)

Expression


Co-expression Network