LOC110509002 (LOC106599181)


Basic Information

Item Value
gene id LOC110509002
gene name LOC106599181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32363038 ~ 32368915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589935.2
TTTTATCCATGTTCATCGATCCTCCTGTCTCACCTTATTAACGTTTCTTTGTGTTGCAAAATGAGATGTTTGTTTAGCTGGTGGCGCTGCACCTGAATGTCAACTATATTAAAGGAACACTTCTGTCCTATTCAAGTCATTTGTTCTTCTTCCTGGTTATGGTGGATCACGACTACGTACTTGTTGATGTCGTAGGATAAATACTTAGTCGTTACTTTTGAATTGTATAAACCAAATAATATTTTGTCAACACCTTGGCTTTCACACGTAGTGAATTTGACAGCAAAGTCATGCAACACAGGTCATTCCATCAGTCTTTCCGCACCACTTCTTCTGTGAGAAGAGGAGGTCGTGAGACATCTGGAAAGAGGCTCTTTGTGACAGGTGCCAAAAGTGTGGGATGGGCAGCATCAGGAGGAGGAGCGACGAGGTCCATCTACCAGAAGTTCCGAGATGTTGACCTGCTGGACAAGAAGAAGACGATGACAGCTATGAAGGCTGGGGAGGACCGGGCTATTCTCCTAGGCCTGGGCATGGTCATTGCGTCGGCCATGATGTACTTTGTCCTGGGCATCACTGTACTGCGCTCCTATGCCGACAGTGTGTGGACAGAGGGGAGTGTCTGTATCGTGCTCAACTCCACCATTACGGCAGACATGAACTGCTCTTACAGCTGTGGCTCGGACTGCTGGAGAGGCTCCAAGTACCCCTGTCTGCAGGTCTACGTCAGTGTCAACACCACGGGCAGGGTCAGCCGCTTATCCCACAATGAGGAGAGCTGGGACGCCAACTTTGAGTGTTTCTACGTGCCAAAGTGCCAGAAGGACACCAATGCCATGCACCACATTATCGTGAACATCTCAGAGCGCCTGAAGCCGCACCACCAGGTCCTGTGCTACTACGACCCcagtgaccagcaggagagtgTCCTCCTGACCCGGCAGTACGGCCACAGTCCCGTCTTCCACTCGCTCTTCTGGCCCTCCTGTATGCTCACGGGGGGCACCGCCATCATCTTCATGGTCAAACTCACCCAGTACCTCTCCATCATGTGCGAGCAGGTTATCAAGATCGAAAGGTGAAGCTTGCTGGCGTGGCAGCTGAGAGCGTCAAACATGGCCGCCAGTCCGGACAGATGATGACATGAAAGGGATTGTTTCAACCGAAGGACCCTGTGACCTCTTGTAATGTCGCTCTCTCAGCGCTGAGAGATTTGGAACAGGTGGCTGGACTGGTTTCTGTTCTGAAACTGACATCTTGGAAAGCAGATAAATGAATGTTCGACCCCTGTTGCCTGGAAAGCAACTTGCATGCATGTTTTCTTACTGAATATGTAAACTTTTTATATACATTAACCGTCTATTTGAAAGTTATTAAATTATTCACCAACGTTGAACATGGGACTTTCACAGAAAGTTGGGTACAATCCTAAGTGTTGAGTATTGGTGAGCACTTTATCTAACACAGATGACAATGCCAAGCTACATTTGTGCTGacggagtgagacagagagttcaTTCTCCTAAATTGTCCAATGTATTTGCTGAAGATAACTGTTCACGTCCTACTGTGTCAAAGTTAGAACCCTGTTTCAGTTCCTGTATGTTCACAATGAAGAGGGTTAAAGACCATTGTGGATATACTCGAACTAGGTAGAATATGCAGAATCTAATGGGGAAAATGCTGAATGACACCATCAACATATTTTAGGGGTCAGCTATAGCTTATATTATTTATAGTAGATACCATTTTATTGTTCAGTCTGTCATACAGAACTTGTGTGCTATgcagcaacaacaaaaatcagTGTCTTGTTCTTGTCTTGCTCTGATGACAACCCCAGGGAAGCTGCAAattccattctgtttattttgaatacattttgcTCTGTATGCAATAAATTGACCTCTCATTACATATACATGTACTTATGCCTTCCCATGGTGAGGCATatcaaaatgaaataaataatttcatTGTTTACAAATGATGAAACTGTAATAAACCCTACATTCTTGTTCAGAAATT
>XR_002471388.2
TTTTATCCATGTTCATCGATCCTCCTGTCTCACCTTATTAACGTTTCTTTGTGTTGCAAAATGAGATGTTTGTTTAGCTGGTGGCGCTGCACCTGAATGTCAACTATATTAAAGGAACACTTCTGTCCTATTCAAGTCATTTGTTCTTCTTCCTGGTTATGGTGGATCACGACTACGTACTTGTTGATGTCGTAGGATAAATACTTAGTCGTTACTTTTGAATTGTATAAACCAAATAATATTTTGTCAACACCTTGGCTTTCACACGTAGTGAATTTGACAGCAAAGTCATGCAACACAGGTCATTCCATCAGTCTTTCCGCACCACTTCTTCTGTGAGAAGAGGAGGTCGTGAGACATCTGGAAAGAGGCTCTTTGTGACAGGTGCCAAAAGTGTGGGATGGGCAGCATCAGGAGGAGGAGCGACGAGGTCCATCTACCAGAAGTTCCGAGATGTTGACCTGCTGGACAAGAAGAAGACGATGACAGCTATGAAGGCTGGGGAGGACCGGGCTATTCTCCTAGGCCTGGGCATGGTCATTGCGTCGGCCATGATGTACTTTGTCCTGGGCATCACTGTACTGCGCTCCTATGCCGACAGTGTGTGGACAGAGGGGAGTGTCTGTATCGTGCTCAACTCCACCATTACGGCAGACATGAACTGCTCTTACAGCTGTGGCTCGGACTGCTGGAGAGGCTCCAAGTACCCCTGTCTGCAGGTCTACGTCAGTGTCAACACCACGGGCAGGGTCAGCCGCTTATCCCACAATGAGGAGAGCTGGGACGCCAACTTTGAGTGTTTCTACGTGCCAAAGTGCCAGAAGGACACCAATGCCATGCACCACATTATCGTGAACATCTCAGAGCGCCTGAAGCCGCACCACCAGGTCCTGTGCTACTACGACCCcagtgaccagcaggagagtgTCCTCCTGACCCGGCAGTACGGCCACAGTCCCGTCTTCCACTCGCTCTTCTGGCCCTCCTGTATGCTCACGGGGGGCACCGCCATCATCTTCATGGTCAAACTCACCCAGTACCTCTCCATCATGTGCGAGCAGGTTATCAAGATCGAAAGGTGAAGCTTGCTGGCGTGGCAGCTGAGAGCGTCAAACATGGCCGCCAGTCCGGACAGATGATGACATGAAAGGGATTGTTTCAACCGAAGGACCCTGTGACCTCTTGTAATGTCGCTCTCTCAGCGCTGAGAGATTTGGAACAGGTGGCTGGACTGGTTTCTGTTCTGAAACTGACATCTTGGAAAGCAGATAAATGAATGTTCGACCCCTGTTGCCTGGAAAGCAACTTGCATGCATGTTTTCTTACTGAATATGTAAACTTTTTATATACATTAACCGTCTATTTGAAAGTTATTAAATTATTCACCAACGTTGAACATGGGACTTTCACAGAAAGTTGGGTACAATCCTAAGTGTTGAGTATTGGTGAGCACTTTATCTAACACAGATGACAATGCCAAGCTACATTTGTGCTGacggagtgagacagagagttcaTTCTCCTAAATTGTCCAATGTATTTGCTGAAGATAACTGTTCACGTCCTACTGTGTCAAAGTTAGAACCCTGTTTCAGTTCCTGTATGTTCACAATGAAGAGGGTAGAATATGCAGAATCTAATGGGGAAAATGCTGAATGACACCATCAACATATTTTAGGGGTCAGCTATAGCTTATATTATTTATAGTAGATACCATTTTATTGTTCAGTCTGTCATACAGAACTTGTGTGCTATgcagcaacaacaaaaatcagTGTCTTGTTCTTGTCTTGCTCTGATGACAACCCCAGGGAAGCTGCAAattccattctgtttattttgaatacattttgcTCTGTATGCAATAAATTGACCTCTCATTACATATACATGTACTTATGCCTTCCCATGGTGAGGCATatcaaaatgaaataaataatttcatTGTTTACAAATGATGAAACTGTAATAAACCCTACATTCTTGTTCAGAAATT

Function

NR:

description
calcium-activated potassium channel subunit beta-2-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589935.2 False 2028 mRNA 0.45 5 32363038 32368915
XR_002471388.2 True 1996 mRNA 0.45 6 32363038 32368915

Neighbor

gene id symbol gene type direction distance location
LOC110508999 NA coding upstream 88658 32269215 ~ 32274380 (+)
LOC118944910 NA coding upstream 90061 32272798 ~ 32272977 (+)
LOC118944909 NA coding upstream 90584 32272274 ~ 32272454 (+)
LOC118944911 NA coding upstream 91374 32271594 ~ 32271664 (+)
LOC118944913 NA coding upstream 91797 32271167 ~ 32271241 (+)
LOC110508222 LOC106598808 coding downstream 5776 32374691 ~ 32403493 (+)
nmur1b LOC106599180 coding downstream 212218 32581133 ~ 32589881 (+)
LOC110509005 NA coding downstream 245652 32614567 ~ 32622807 (+)
pfn2l LOC106598797 coding downstream 304830 32631289 ~ 32700844 (+)
LOC110509009 LOC106598794 coding downstream 316621 32685536 ~ 32690499 (+)
G2128835 NA non-coding upstream 4692 32358142 ~ 32358346 (+)
G2128834 NA non-coding upstream 5336 32357478 ~ 32357702 (+)
G2128832 NA non-coding upstream 20399 32342428 ~ 32342639 (+)
G2128818 NA non-coding upstream 48422 32312075 ~ 32314616 (+)
G2128817 NA non-coding upstream 52274 32310408 ~ 32310764 (+)
G2129242 NA non-coding downstream 194547 32563462 ~ 32563697 (+)
G2129262 NA non-coding downstream 222979 32591894 ~ 32592146 (+)
G2129271 NA non-coding downstream 242098 32611013 ~ 32611763 (+)
G2129310 NA non-coding downstream 263135 32632050 ~ 32632657 (+)
G2129353 NA non-coding downstream 353238 32722153 ~ 32722430 (+)
G2128753 NA other upstream 88658 32269318 ~ 32274380 (+)
LOC110508984 NA other upstream 307383 32053231 ~ 32055655 (+)
G2128614 NA other upstream 414736 31945164 ~ 31948898 (+)
G2128189 NA other upstream 622968 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 719576 31594783 ~ 31643462 (+)
G2129371 crb1 other downstream 380013 32748928 ~ 32749568 (+)
zbtb41 zbtb41 other downstream 414953 32759166 ~ 32803922 (+)
LOC110509024 LOC106598521 other downstream 689382 33050612 ~ 33070407 (+)
G2129639 LOC106598496 other downstream 939183 33308098 ~ 33308991 (+)

Expression


Co-expression Network