LOC110509003 (LOC106598805)


Basic Information

Item Value
gene id LOC110509003
gene name LOC106598805
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32462184 ~ 32514866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966281.1
ACCCCCCTCCTTCCACCCGTCCCGTACACTCCCTAGCCCCCGTCTGTCTCGACTGTCCCGATTGCCATTCCAATGCACACTCCTTGAGGAGCAACAGCTACAACGGAGTTAGTGAAGTGGATTACTTAGTTTTTAGATAGAAAAGATTTGCTGTATTTTTGGAGCAATGTGCAAGGGCATAGATGTGCGTTTGGATAACAATTTGGCATCGGTAAAGCGCGAGAAAGGAGTTGTAGAAAGAGCGCATTGTAATGCTCCGTAAGCTTTGTCCATTCTCTTCGAGGATTTGACCGTTGATTTCAATGGAAAACAAAAAGTGCTTGATTAATACTACGTTCGACTGGATGTAGTGGCATGGGATGGTTTTATTCATCATATTAATTCAAGTGACGTGTAAACCGTTCATCGACTCCAGTGCTATAGGTGGTGTATGTTGTGTGGCACCATCCGACCGGTCCAGTCAAAGCCTTTATTCATGTTGCAAGAACCTAGTTTATGACAATGGATTACTTGCTGTGGATGTGCAGCTTTGTGCTTCCCGTGGTATTAGCTGTTGAAGAAACACTAATGGACAGCAAGTGGGCAACCACAGAACTGGCCTGGACCACGTTTCCGGAGAGTgggTGGGAGGAGGTGAGTGGCTACGATGACTCCATGAGTCCCATAAGGACGTATCAGGTGTGCAACGTGCGCGAGCCCAACCAGAACAACTGGCTGAGGACGGACTTCATCCCCCGTAAAGGCGTGCTACGCATCTACGTGGAGCTCAAGTTCTCTGTCCGCGACTGCGCCAGTATTCCCAACATCCCCGGCTCCTGCAAGGAGACCTTTAACCTCTTCTACTACGAGTCTGACGGCGACACCGCCACGGAAAGTAGTCCATTGTGGAGGGAGAACCCTTATGTGAAGGTGGACACCATCGCTCCCGATGAGAGTTTTTCCCTTCTGGTGGCAGGCAGGATCAACACCAAAGTGCGAAGCTTCGGACCTCTCTCCAAGGCCGGCTTCTACCTAGCCTTCCAGGACCTGGGGGCTTGTATGTCCTTGATATCCGtgcaggttttcttcaagaaGTGCTCGACGACCATCGCAAACTTCGCCGTCTTCCCCGAGACGGCTACAGGGGCCGAGGCCACCTCCTTGGTCATCGCCCCAGGGGCATGCGTGTCCAATGCGCATGAGGTGTCCGTCCCTCTGAAGCTGTACTGCAACGGGGATGGGGAGTGGATGGTTCCCGTGGGGTCTTGTACCTGCATGCCAGGGTTTGAGCCGGCCATGACCGACACACAGTGCCAGTCATGTACCCCCGGGTCATTCAAGTACAAACATGGGGAGGACTCATGTTACCCTTGCCCCCCCAACAGTCGCACCAGCTACAGGGGGGCCAATATCTGCCCATGCCAAAATGGCTTCTACCGTGCCGACAGTGATTCTCCGGACTCAGCCTGCACCACCAAGCCCTCGCCACCTCAATACGTAATCTCCACCGTGAACGAGACTTCCATCTCCCTGGAGTGGGAAGAGCCGCTGGACACCGGCGGACGGGATGACGTCATCTACAACGTGGTGTGCAAGAAGTGTCTGCACGACCGGAGCCCGTGCACGCGCTGTGACGACAACGTGGACATATCGCCGCGCCGACTGGGCCTGACCCAGAAGAAGGTGGTAATGAGGAACCTGCAGGCTCATACCCGCTACAGCTTTGAGATCCAGGCGGTCAACGGCGTCTCTGGGAAGAGCCCCGGCGCACCGCGCTACGCCACCGTCAACATCACCACCAACCAGGCCGCACCGTCAGCAATACCCACAGTGCACCTGATGAAGTCCACATCAGACACACTCAGCCTGTCCTGGCTTCCCCCAGAGAAACCCAACGGGGTTATCCTAGATTACGAGATTAAGTACTACGAAAGGGGCCAGGCCATGTCTCACACGGTGACAGCCCAGCACAGCTCAGTCCGTGTGGAGGGATTGCGGGCTGCCACTCCCTACGTGGTCCAGGTCCGGGCTCGCACCGTGGCTGGCTATGGCCGCTACAGCATCCCTAAGGACTTCAGCACCTCAACACACAGTGACCCTATGAAGTCAGTGCAGGACCAGCTGCCTCTCATAGTGGGCTCAGCGTCCGCCGGTCTTGTGGTCATCGTCGCCCTTGTGGTCATTGCCATAGTTTGCTCTCGGAAACAACGCAGCGGTTCGGAGCTGGAGTACACGGAGAAGCTGCAGCAGTATGTTTCTCCCGGGGTGAAGGTGTACATTGATCCGTTCACTTACGAGGACCCCAATGAGGCAGTCCATGAGTTTGCCAAGGAGATTGACATCTCGTGTGTGAAGATTGAGGAGGTCATTGGTGCAGGTGAGTTTGGGGAGGTGTGCCGCGGGCGCCTGAAGCAGCCCGGGCGCCGTGAGGCGGTGGTGGCCATTAAGACACTGAAGGCAGGCTACACAGAGCGCCAGAGGCGGGACTTCCTTGGCGAAGCGTCAATCATGGGCCAGTTTGACCACCCCAACGTGATCCGGCTGGAGGGCGTGCTGACCCGCAGCTGCCCCGTGCTCATCATCACCGAGTTCATGGAGAACGGAGCGCTGGACTCCTTCCTCAGGCTGAATGACGGGCGCTTCACGGTGACCCAGCTGGTGGGCATACTGCGTGGCATCGCGGCGGGCATGAAGTACCTCTCGGATATGAACTACGTTCACCGGGACCTGGCTGCCCGCAACATCCTGGTTAATACCAACCTGGTGTGTAAGGTGTCCGACTTCGGCCTGTCCCGTTTCCTAGACGACTCATCAGCCGATCCCACTTACACTAGCTCTCTGGGAGGGAAGATTCCCATCCGCTGGACCGCCCCTGAGGCCATTGCCTTCAGGAAGTTCACTTCGGCTAGTGACGTCTGGAGCTACGGCATCGTCATGTGGGAGGTGGTGTCCTACGGAGAGAGGCCCTACTGGGACATGGGCAACCAGGATGTGATGACTGCGGTTGAACAGGACTACCGTCTGCCCCCTCCTATGGACTGCCCCATGGTGCTGCACCAGCTCATGTTGGAGTGCTGGGTGAAGGAGAGGAACCTGAGGCCCAAATTCTGCCAGATCGTCAGCACCCTGGACAAGCTGCTCCGCAACGCCGCCACACTCAAAGTGGTCACCAGCACATACTCAGGGGATCTGATGCGGATCGGGGGGACGTTGCCTGGCCACCACATAAAGAGCCTGGACAGCAGTCAGAATGACATCGTTCGACAACAGATGAGCGCAACTCTCCCCATAAGGGTCTGAGGTTTGGATCTGGACCAACAGAACAACAAACCAACACATCAGCAGAGGAAACTGGACCCACTAGAAACCACCTAGGAGCTCTACTTGCAGAACCCAATGAGTGAATAAATGGATGACCCATTCCTAGACAAAAACAAAAGTGGTCTGCTGTACCTACACAAAACTAACATGGGAAAAGGACATCTTGACTTTGGACAGCTTCAGTGGAGCTCTGTTGAGAACAGACTCTTGAGCAGCTTGTGGAGAACTTGTTTATTGGTGTGTGCTCGCACTCAGTATTGACATTTGTGATTTCGAGAACCGTCCATTGACAGAAAGCCAAACTCTCCCTCAGGTTATGTTTGCATGTCTGCATGTGTTTTCTGCTGCCTGGGAAGCGTCCTTTTTGCCAAAGTGATTCCCATGTCTTCCCTGCCTTTATCATTGACTTTGACCACGGATGGGAACCGATATGGATACTATGTACTGGAAAGATACAGGCGCAATGATGATACAAAAGGGTTTGTTCGAATGATGAGTCTTTGAGGATGTATTCTATGGATTCTGAAGGAACGCGGACACCTGAAAATATTGTATCCTAATGCCCTTGGTCAGAGAACTTGATTGCAGACTTCTATAAGAATTGCTGTTTTTTATTATCTTGTTTTGTCCACTTTCTTTAATTGTGGTCTTTCATGTCAGTGGAAGGTTTCGGTCTCATGATACTGTATGTGTCTTTGCGTGTCCCATTCACCTTCCCTGGATAAAGGGGCTGACTGAGTAGGACGTATTTGactgtaatacagtacaggacaCACCATCATTTGCATGCCAAATTGGAACTGTTGTGGATGAATGTCATGTGAACAAGAGACAATGGTTCCGCATAACTATTAGTCTATTTTCTTACTCTTATTTTATTCAACTATGTCTTGTTTTGGATGCTAAGTTATTACTTATAGTTGAATATAGTATTGCGTTTTCTACAGTAATTGAGGGATATCTTGTTTTTTTTTCGACACGTTATCTTAATACACTAGACAGTGAATTTAATGATTAAACAATATTCAAATATTTTGTGGCAGCTGTAGCTCGTAGGAAAGGGTTAATGATGAACCATAGCTACTTCTAGTCACCATTGCTGGCCCACATCGCCAGCCTGTCAGTACAGTTGTCAATTCCATTATTCTGGACACGCTACTGATATCTTAGCCTGGGgttccagtctgtttgtgctttaACCAAATCGTCTCTGTGTTTTTCCATTGTCATGCCGAACATGTTTGGTCTGACACCGATAGTCAGGGAAGTTGGCTAAAGCACATAGAatatgggaccaggctaactggctAACTATGTTGAAGTGTCGGATGTTTTCTTAAGTAAAATGTGTCAAGGATCCCGTGCAAATGAAATATGTTACCATTAAGATGATAACTATGTGACCTCAATATCAACCTGACCCACAAAAAGTTTGAATTATTCAGTGAATTACtcttgacatgtttttttttttaagtacgcCAGCTGTCAGTATCTTCCGTGTTATAtgatctccccatccctactAAATCCGCTCAGAGTTCATCTTCATTTGGCCCCTCTGACCTCCGTGTGAACCTCCgtatgtttgtttgttgttggcaACATCAAAAGAAAAATTACAGTTTAAAGGGGCCATGTACCAGGATAGAAAAATCTATGTGAAATAagaaaaacaaggaaatgtccgTCAGGGCAGACTTCTTTCTGTAAGACTAAGGTGTATGGAATTGTCTGCCAGGGCAGACTTCTTTCTGTAAGACTAAGGTGTatggaattgtaaaaaaaaaaagaaagaagaaaaaaaagaaactagAACAAAATACGCATTTCTCTCTTAGTATTTTTTCGATAATCATATGCAAATCAATTATTAAAGTGATCTATGGTATTCTCTTTTA

Function

NR:

description
ephrin type-B receptor 3-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966281.1 True 5201 mRNA 0.50 15 32462184 32514866

Neighbor

gene id symbol gene type direction distance location
LOC110509001 LOC106598815 coding downstream 129765 32312071 ~ 32332419 (-)
LOC110509000 b3gnt5 coding downstream 169991 32280903 ~ 32292193 (-)
dcnl1 LOC106598823 coding downstream 195166 32263643 ~ 32267018 (-)
ccdc39 ccdc39 coding downstream 198754 32244116 ~ 32263430 (-)
LOC110508996 NA coding downstream 218599 32240882 ~ 32243585 (-)
cpdp LOC106598802 coding upstream 83562 32598428 ~ 32614539 (-)
LOC110509006 LOC106598799 coding upstream 113434 32628300 ~ 32655443 (-)
ahsg2 LOC106598792 coding upstream 185172 32700038 ~ 32704296 (-)
LOC110509013 crb1 coding upstream 221282 32736148 ~ 32751440 (-)
LOC110509017 LOC106599177 coding upstream 271040 32785906 ~ 32788215 (-)
G2129099 NA non-coding downstream 36743 32379801 ~ 32425441 (-)
G2129103 LOC105028918 non-coding downstream 59452 32399453 ~ 32402732 (-)
G2129095 NA non-coding downstream 87089 32374665 ~ 32375095 (-)
G2129060 NA non-coding downstream 100605 32361342 ~ 32361579 (-)
G2129017 NA non-coding downstream 150814 32310876 ~ 32311370 (-)
G2129998 NA non-coding upstream 50139 32565005 ~ 32565208 (-)
G2130055 NA non-coding upstream 204371 32719237 ~ 32720885 (-)
G2130058 NA non-coding upstream 209105 32723971 ~ 32724470 (-)
G2130060 NA non-coding upstream 210428 32725294 ~ 32725766 (-)
G2129953 NA non-coding upstream 212911 32727777 ~ 32732290 (-)
LOC110508997 NA other downstream 231970 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 297162 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 433626 32023057 ~ 32029225 (-)
G2128568 NA other downstream 579044 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 724692 31708667 ~ 31761665 (-)
G2130393 NA other upstream 883681 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1525340 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1526572 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1526703 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1971003 34485869 ~ 34486176 (-)

Expression


Co-expression Network