LOC110509006 (LOC106598799)


Basic Information

Item Value
gene id LOC110509006
gene name LOC106598799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32628300 ~ 32655443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966770.1
TGTTACCCACGATGCAGTGCGGTTGTACATAACTAGCCTAGGCTAGCTAGCCATCTTGACAAGAATGAGGGAGGTAGCCGCTGTTCGGAATTTCAGTTCCCTGAAGTGTGAACTAGAGACGATTTATTATTGGAAATGGGTTACATATACCTTTGAAACGAGTGTTAGTATTGAATCGTTTTAAGTTCGTAAGTCAAGAGGGGAGAGGTGACTTGTTCCGAGAGATGTCTTACATACTTGTCCCAACGTAAAGAGAGTGTTgttgtagccagctagctagttgaGTGGAGAGGTACGGGCCCGCTTCACAGTCTAAAGTAGCTGCCGCAGCTGGGCAACTCTATCTGCGACAGCCGCCATCTGACAACTACGGGGTCCGGACATTACTTTACTGAACAGGCCGGTACGGACGGATTAAAGCTTTGGATCAGTTATCGAATTACTACTTCTATTGGCAAAGGCTGGACTTGGAAGGGTTGGTCTTCAATGTTATGAACTCGTAAAATGCaacaggagacgagaggaggaaGGAACAAGGATGACTCATACTCCTCTTGATAATAGTTTAAAAAAACTTCCATCGATGCAAATTCGCTGTTTCAGATAGCCAGTTGTCAGCTGATATTAGCTAACTCACTTGCTTTTAACGCGAGACATTTAGACGGGAGTTGTGAACGCAGGCTCTCAAAATGTCTAAAATGCCGGCTAAAAAGAAAAGCTGTTTTCAGATCACAAGTGTGACACAGGCTCAGGTGGCGGCCAGCAGTGCCACGGACGACACGGAGAGCCTGGATGACCCAGACGAATCACGGACTGAAGACGTGTCGTCGGAAATATTCGACGTGTCCCGGGCTGACTTCGAGCCGGAGGTATGTGATCGAAGTTCGTCTGAGGAAACCCTAAACCATGTAGGGGAGCAAGAGGCACCAGGCGTTATGGTCCCACCGCGTAGTGTACCTAAAGTTGGGCAGATACCTGCAATGTCGGGGCCTCCAAATGAAGGTTTTGCTATTCGAAAGGCAGGAGTGGCAGGCTCGCCTCATGTTAGCCAGCAAACACTGGGAAGTGGTTCGTCAAGCGGCCTCCCTATTGCTCAGTCCGGGCTCATGCCACAGCCTGCCCCAGTGGCCAGTTGGGGGGCTACAACAGTGTCAGTGAGCACATCCCAGTCAGTATTGACTAGTTTAACCCCTACTTCTGCTATGTCATCGACAGCAAGTTGCAGTTCACGTTTCAGGGTCATCAAACTTGACCATGGTACTGGAGAGCCCTTCAGAAAGGGCCGATGGACTTGCACAGAGTTCTATGAGAAAGACTCAGAGGGTAACACTGTGGTTAACAGGACTACGGATAACATTAGACATGCCAATGCATTTGACCCCAGTGCTGACAGGGACAGCGGATTGGGGTTGACTGGTGGTACTGTGGTTGCACCGTCGACTCACTCCGGCCAGGGCCTAGACTCCATAGTGGATGCTGCTGCTCTTAATGCCTTGCACGTTCACCCAATGGACACActgcaacagcagcagcagcctcacCACCAAAACTACAACATGGGGCAGCCTGGAACAGCCACACACAACACTTTCCCCACCAACAACCTCATGGCTGTCCCAGGTCAGCAGCCAACGCTGAGTACTATCCAACCTGCTGCCAACCAGAACCTCTTTCCTGTGGGGCTCAACGGTCTTCCTCAAAGTGGCATTCACATACAGAAATCCCCAAGCATGACCCCTGCAGCACAGACCCAGACGCTGGCTTACCCTCCCCAGCAGCAGGCCATGCTACAGCAGCTTCCACTGGGACAGCACCTGCCCAACCAGCCCCCAGGCCTGCCCCAGAACCAGGCAGACTACTACCAACAGAACCAGCCTGGCATGCAGGCAGTGGCCTCAGCTGGCCAGACCCTCTATGTGGGACAGACTGTGGGTCAGGGCCCGTCACTGGTCATGACTCCCGCCACCGGGGTTCCGATGCTGGGGCAGGTAGGGGAGATGGCAGCAGTTGGGGGAGGAGGTTCTTTACCTGTCAGTCAGCCAGCTTCAGGCCTGATGGGTGGAGGTGTGGGAGGTGTTGGGTCATCCATGGTACTGGGCGGAAGCTCTACTCTGCAACAGCTTGTAGGTCAGTATGCCCCCACGGGTATTCGTCAACCCTTCGGCCTCCACCCTTCGCCCCCCGGCACCCAAAACGTGCCCACCATTGTGCCCAGTGCCTCCAGCGCCACCACATTAGCCCCCACCGCCAAGCCAAACCTGACTGCCTCCTTGTTGCCCGGGCAACAGGCCCGCGATGGCAGGGGGGCGCAGGGCCTCCCGGCGGCTGGGTTCAGCCATGTGGAGGAGGGCCAGCCTCCCGCCTTCTCTGAGAAAAACCTGATGAAGATCCCTGAGAGCCTGCAGCTGGCCAACAACCCCTCTGTGAACAGCCTGTTTGGAATAGCCATAGACGGAGACGAGGACAGTGCCTCTGGAGCCAGTGTTGTTGCCATTGATAATAAAATCGAACAGGCGATGGACTTAGTGAAAAGCCATCTGATGTATGCAGTGCGTGAGGAGGTGGAGGTGCTGAAGGAGCAGATCAAGGAGCTGTTTGAGAGGAACTCTATGCTGGAACAGGAGAACGCCGTGCTGAAATCCCTGGCCAACAGCGACCAATTGTCTGAGCTCTCCGTCCGGCCGGCCGCCACAAACTCCTCCTGCAGCACGCCTCCCCAGCAAGGGGTGGGCCAAGGCCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAACGCAGCCTCCGCTCCAGGCCCAGCAactccagccccaaccccagcttGACGCCAGCCAGCCTTTGCTGCAACCGCAGCCCAACGGCAACTCCGCTTGAAGTGCATTCCCCCCCAGCAGGAGAAAAAAAAGCAGAAAAGCACCCTCCAATTATTCTAAATTAGCATACGAAACAACAAAATAATTATATTGTCTTGTTCTCCACCAGCTTGGCCACCATAACCAAGAGCAGTGCTTCTGTGCCTGTTTGGCTTTCCCAGTGTTAATGCAATCATTGCGCGAGAGAGACGGGGGCTTTTCTTATGGGGCGCCAGCCTGGACTGGTTGAGTGCTGTGGAccagatctcccccccccccccccccggctacAAAGGAGTTGTGCAGCTCACATGAGGATGAATCGGAGCGTCCCagagatgttttgttgttgtaagagATGTGTTTTTAGCCTTGCTGTTCCATGTTGTAAGTAAGAAGTGGGGGAGAGATCTATTTTCGGAGCCGCGCCACCATTTCTTCTTCGACATGAGTCCAATCCATGCATCAGTCTAAAGTTCTACGGTTAATGTTTATTTATTACGGGGCTGCTATTTTCATGAAAGGAACAATGTCACAAAAAAAACGATTAAAAAAAAAAGGCCTTTTTTTTTGTCATCAGTGTTTAAAATAGTCTGTACACACAATTGGCAGTGTATTACATTAACCAGTTGAATATGTAGGCAATAATCAAGAAACTCTGACATACGTCTAACACTAAACAGGCAGTTTTACAATGGAATTGTTTATCCGCACCAGTCAAGATCCAGTTTGAATGTACATTTTGTATAGTGTAAAGTATTAAGAACATAGCAAAGTTTGTACAGGTGAACACCAAGTCTACGGACAGGAAATCTGAACGTGAATCTGCGGTAgactatttttttttaacaaacttCCAATCCAATTGCTAGTTTCTTTGTCTCCAAAATGGAACGTTTATTGTCATACTCGTCTTCTTGTACATGtgtttttggggtgggggggaaaAAAGCTGTGAAATCGTTCATACCTACTTTGTAACCAAAGATGCAAAGCTGTAATTCGATTTATTATTTTGTAATGTGCActtctgtatatattttttttctcactttcacaacaaaatgtttttgttgCTGTTTAGCATGTTCTGCATGATCTGTAATTTTCAAACCACTTTCTTACCTCATATTTTTATTCAGCACTCTTATTGTAAGATAGTAGTCTGTGAACAATGTAAATGGGGGGGAAAAAAGACATGGAGACAAAGAGCTAGGGTTTTGGTAGAGCGATACAAACAAGTGTTAAGTACACTAGCTACAGAAAATGAAGTGAGCCATGTTTTGTTCATTTAAATGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTGCAAATTTAATGTATTTAAATAAATGCAATATTCAGATTC
>XM_036966769.1
TGCGTATGTTACCCACGATGCAGTGCGGTTGTACATAACTAGCCTAGGCTAGCTAGCCATCTTGACAAGAATGAGGGAGGTAGCCGCTGTTCGGAATTTCAGTTCCCTGAAGTGTGAACTAGAGACGATTTATTATTGGAAATGGGTTACATATACCTTTGAAACGAGTGTTAGTATTGAATCGTTTTAAGTTCGTAAGTCAAGAGGGGAGAGGTGACTTGTTCCGAGAGATGTCTTACATACTTGTCCCAACGTAAAGAGAGTGTTgttgtagccagctagctagttgaGTGGAGAGGTACGGGCCCGCTTCACAGTCTAAAGTAGCTGCCGCAGCTGGGCAACTCTATCTGCGACAGCCGCCATCTGACAACTACGGGGTCCGGACATTACTTTACTGAACAGGCCGGTACGGACGGATTAAAGCTTTGGATCAGTTATCGAATTACTACTTCTATTGGCAAAGGCTGGACTTGGAAGGGTTGGTCTTCAATGTTATGAACTCGTAAAATGCaacaggagacgagaggaggaaGGAACAAGGATGACTCATACTCCTCTTGATAATAGTTTAAAAAAACTTCCATCGATGCAAATTCGCTGTTTCAGATAGCCAGTTGTCAGCTGATATTAGCTAACTCACTTGCTTTTAACGCGAGACATTTAGACGGGAGTTGTGAACGCAGGCTCTCAAAATGTCTAAAATGCCGGCTAAAAAGAAAAGCTGTTTTCAGATCACAAGTGTGACACAGGCTCAGGTGGCGGCCAGCAGTGCCACGGACGACACGGAGAGCCTGGATGACCCAGACGAATCACGGACTGAAGACGTGTCGTCGGAAATATTCGACGTGTCCCGGGCTGACTTCGAGCCGGAGGTATGTGATCGAAGTTCGTCTGAGGAAACCCTAAACCATGTAGGGGAGCAAGAGGCACCAGGCGTTATGGTCCCACCGCGTAGTGTACCTAAAGTTGGGCAGATACCTGCAATGTCGGGGCCTCCAAATGAAGGTTTTGCTATTCGAAAGGCAGGAGTGGCAGGCTCGCCTCATGTTAGCCAGCAAACACTGGGAAGTGGTTCGTCAAGCGGCCTCCCTATTGCTCAGTCCGGGCTCATGCCACAGCCTGCCCCAGTGGCCAGTTGGGGGGCTACAACAGTGTCAGTGAGCACATCCCAGTCAGTATTGACTAGTTTAACCCCTACTTCTGCTATGTCATCGACAGCAAGTTGCAGTTCACGTTTCAGGGTCATCAAACTTGACCATGGTACTGGAGAGCCCTTCAGAAAGGGCCGATGGACTTGCACAGAGTTCTATGAGAAAGACTCAGAGGGTAACACTGTGGTTAACAGGACTACGGATAACATTAGACATGCCAATGCATTTGACCCCAGTGCTGACAGGGACAGCGGATTGGGGTTGACTGGTGGTACTGTGGTTGCACCGTCGACTCACTCCGGCCAGGGCCTAGACTCCATAGTGGATGCTGCTGCTCTTAATGCCTTGCACGTTCACCCAATGGACACActgcaacagcagcagcagcctcacCACCAAAACTACAACATGGGGCAGCCTGGAACAGCCACACACAACACTTTCCCCACCAACAACCTCATGGCTGTCCCAGGTCAGCAGCCAACGCTGAGTACTATCCAACCTGCTGCCAACCAGAACCTCTTTCCTGTGGGGCTCAACGGTCTTCCTCAAAGTGGCATTCACATACAGAAATCCCCAAGCATGACCCCTGCAGCACAGACCCAGACGCTGGCTTACCCTCCCCAGCAGCAGGCCATGCTACAGCAGCTTCCACTGGGACAGCACCTGCCCAACCAGCCCCCAGGCCTGCCCCAGAACCAGGCAGACTACTACCAACAGAACCAGCCTGGCATGCAGGCAGTGGCCTCAGCTGGCCAGACCCTCTATGTGGGACAGACTGTGGGTCAGGGCCCGTCACTGGTCATGACTCCCGCCACCGGGGTTCCGATGCTGGGGCAGGTAGGGGAGATGGCAGCAGTTGGGGGAGGAGGTTCTTTACCTGTCAGTCAGCCAGCTTCAGGCCTGATGGGTGGAGGTGTGGGAGGTGTTGGGTCATCCATGGTACTGGGCGGAAGCTCTACTCTGCAACAGCTTGTAGGTCAGTATGCCCCCACGGGTATTCGTCAACCCTTCGGCCTCCACCCTTCGCCCCCCGGCACCCAAAACGTGCCCACCATTGTGCCCAGTGCCTCCAGCGCCACCACATTAGCCCCCACCGCCAAGCCAAACCTGACTGCCTCCTTGTTGCCCGGGCAACAGGCCCGCGATGGCAGGGGGGCGCAGGGCCTCCCGGCGGCTGGGTTCAGCCATGTGGAGGAGGGCCAGCCTCCCGCCTTCTCTGAGAAAAACCTGATGAAGATCCCTGAGAGCCTGCAGCTGGCCAACAACCCCTCTGTGAACAGCCTGTTTGGAATAGCCATAGACGGAGACGAGGACAGGACCCCCTCCATGGTGTTCTACCGGGCCTTCCAGTCTGGCAGCAGGCTGCAGGACTCTAAGGCCCACAGTGATAgTGCCTCTGGAGCCAGTGTTGTTGCCATTGATAATAAAATCGAACAGGCGATGGACTTAGTGAAAAGCCATCTGATGTATGCAGTGCGTGAGGAGGTGGAGGTGCTGAAGGAGCAGATCAAGGAGCTGTTTGAGAGGAACTCTATGCTGGAACAGGAGAACGCCGTGCTGAAATCCCTGGCCAACAGCGACCAATTGTCTGAGCTCTCCGTCCGGCCGGCCGCCACAAACTCCTCCTGCAGCACGCCTCCCCAGCAAGGGGTGGGCCAAGGCCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAATGCAGCCTCAGCTCCAGGCCCAGCCTCAAACGCAGCCTCCGCTCCAGGCCCAGCAactccagccccaaccccagcttGACGCCAGCCAGCCTTTGCTGCAACCGCAGCCCAACGGCAACTCCGCTTGAAGTGCATTCCCCCCCAGCAGGAGAAAAAAAAGCAGAAAAGCACCCTCCAATTATTCTAAATTAGCATACGAAACAACAAAATAATTATATTGTCTTGTTCTCCACCAGCTTGGCCACCATAACCAAGAGCAGTGCTTCTGTGCCTGTTTGGCTTTCCCAGTGTTAATGCAATCATTGCGCGAGAGAGACGGGGGCTTTTCTTATGGGGCGCCAGCCTGGACTGGTTGAGTGCTGTGGAccagatctcccccccccccccccccggctacAAAGGAGTTGTGCAGCTCACATGAGGATGAATCGGAGCGTCCCagagatgttttgttgttgtaagagATGTGTTTTTAGCCTTGCTGTTCCATGTTGTAAGTAAGAAGTGGGGGAGAGATCTATTTTCGGAGCCGCGCCACCATTTCTTCTTCGACATGAGTCCAATCCATGCATCAGTCTAAAGTTCTACGGTTAATGTTTATTTATTACGGGGCTGCTATTTTCATGAAAGGAACAATGTCACAAAAAAAACGATTAAAAAAAAAAGGCCTTTTTTTTTGTCATCAGTGTTTAAAATAGTCTGTACACACAATTGGCAGTGTATTACATTAACCAGTTGAATATGTAGGCAATAATCAAGAAACTCTGACATACGTCTAACACTAAACAGGCAGTTTTACAATGGAATTGTTTATCCGCACCAGTCAAGATCCAGTTTGAATGTACATTTTGTATAGTGTAAAGTATTAAGAACATAGCAAAGTTTGTACAGGTGAACACCAAGTCTACGGACAGGAAATCTGAACGTGAATCTGCGGTAgactatttttttttaacaaacttCCAATCCAATTGCTAGTTTCTTTGTCTCCAAAATGGAACGTTTATTGTCATACTCGTCTTCTTGTACATGtgtttttggggtgggggggaaaAAAGCTGTGAAATCGTTCATACCTACTTTGTAACCAAAGATGCAAAGCTGTAATTCGATTTATTATTTTGTAATGTGCActtctgtatatattttttttctcactttcacaacaaaatgtttttgttgCTGTTTAGCATGTTCTGCATGATCTGTAATTTTCAAACCACTTTCTTACCTCATATTTTTATTCAGCACTCTTATTGTAAGATAGTAGTCTGTGAACAATGTAAATGGGGGGGAAAAAAGACATGGAGACAAAGAGCTAGGGTTTTGGTAGAGCGATACAAACAAGTGTTAAGTACACTAGCTACAGAAAATGAAGTGAGCCATGTTTTGTTCATTTAAATGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTGCAAATTTAATGTATTTAAATAAATGCAATATTCAGATTC

Function

NR:

description
TSC22 domain family protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966770.1 False 4277 mRNA 0.50 3 32628300 32655437
XM_036966769.1 True 4358 mRNA 0.50 4 32628300 32655443

Neighbor

gene id symbol gene type direction distance location
cpdp LOC106598802 coding downstream 13761 32598428 ~ 32614539 (-)
LOC110509003 LOC106598805 coding downstream 113434 32462184 ~ 32514866 (-)
LOC110509001 LOC106598815 coding downstream 295881 32312071 ~ 32332419 (-)
LOC110509000 b3gnt5 coding downstream 336107 32280903 ~ 32292193 (-)
dcnl1 LOC106598823 coding downstream 361282 32263643 ~ 32267018 (-)
ahsg2 LOC106598792 coding upstream 44595 32700038 ~ 32704296 (-)
LOC110509013 crb1 coding upstream 80705 32736148 ~ 32751440 (-)
LOC110509017 LOC106599177 coding upstream 130463 32785906 ~ 32788215 (-)
LOC118944826 LOC106597593 coding upstream 134710 32790153 ~ 32795726 (-)
LOC110509016 LOC106597593 coding upstream 142666 32798109 ~ 32803677 (-)
G2129998 NA non-coding downstream 63092 32565005 ~ 32565208 (-)
G2129919 NA non-coding downstream 122429 32505336 ~ 32505871 (-)
G2129099 NA non-coding downstream 202859 32379801 ~ 32425441 (-)
G2129103 LOC105028918 non-coding downstream 225568 32399453 ~ 32402732 (-)
G2129095 NA non-coding downstream 253205 32374665 ~ 32375095 (-)
G2130055 NA non-coding upstream 63794 32719237 ~ 32720885 (-)
G2130058 NA non-coding upstream 68528 32723971 ~ 32724470 (-)
G2130060 NA non-coding upstream 69851 32725294 ~ 32725766 (-)
G2129953 NA non-coding upstream 72334 32727777 ~ 32732290 (-)
G2130086 NA non-coding upstream 166583 32822026 ~ 32822820 (-)
LOC110508997 NA other downstream 398086 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 463278 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 599742 32023057 ~ 32029225 (-)
G2128568 NA other downstream 745160 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 890808 31708667 ~ 31761665 (-)
G2130393 NA other upstream 743104 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1384763 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1385995 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1386126 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1830426 34485869 ~ 34486176 (-)

Expression


Co-expression Network