Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509006 |
| gene name | LOC106598799 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048592.1 |
| NCBI id | CM023246.2 |
| chromosome length | 43716683 |
| location | 32628300 ~ 32655443 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| TSC22 domain family protein 2-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036966770.1 | False | 4277 | mRNA | 0.50 | 3 | 32628300 | 32655437 |
| XM_036966769.1 | True | 4358 | mRNA | 0.50 | 4 | 32628300 | 32655443 |
32,612,000
32,616,000
32,620,000
32,624,000
32,628,000
32,632,000
32,636,000
32,640,000
32,644,000
32,648,000
32,652,000
32,656,000
32,660,000
32,664,000
32,668,000
32,672,000
NC_048592.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cpdp | LOC106598802 | coding | downstream | 13761 | 32598428 ~ 32614539 (-) |
| LOC110509003 | LOC106598805 | coding | downstream | 113434 | 32462184 ~ 32514866 (-) |
| LOC110509001 | LOC106598815 | coding | downstream | 295881 | 32312071 ~ 32332419 (-) |
| LOC110509000 | b3gnt5 | coding | downstream | 336107 | 32280903 ~ 32292193 (-) |
| dcnl1 | LOC106598823 | coding | downstream | 361282 | 32263643 ~ 32267018 (-) |
| ahsg2 | LOC106598792 | coding | upstream | 44595 | 32700038 ~ 32704296 (-) |
| LOC110509013 | crb1 | coding | upstream | 80705 | 32736148 ~ 32751440 (-) |
| LOC110509017 | LOC106599177 | coding | upstream | 130463 | 32785906 ~ 32788215 (-) |
| LOC118944826 | LOC106597593 | coding | upstream | 134710 | 32790153 ~ 32795726 (-) |
| LOC110509016 | LOC106597593 | coding | upstream | 142666 | 32798109 ~ 32803677 (-) |
| G2129998 | NA | non-coding | downstream | 63092 | 32565005 ~ 32565208 (-) |
| G2129919 | NA | non-coding | downstream | 122429 | 32505336 ~ 32505871 (-) |
| G2129099 | NA | non-coding | downstream | 202859 | 32379801 ~ 32425441 (-) |
| G2129103 | LOC105028918 | non-coding | downstream | 225568 | 32399453 ~ 32402732 (-) |
| G2129095 | NA | non-coding | downstream | 253205 | 32374665 ~ 32375095 (-) |
| G2130055 | NA | non-coding | upstream | 63794 | 32719237 ~ 32720885 (-) |
| G2130058 | NA | non-coding | upstream | 68528 | 32723971 ~ 32724470 (-) |
| G2130060 | NA | non-coding | upstream | 69851 | 32725294 ~ 32725766 (-) |
| G2129953 | NA | non-coding | upstream | 72334 | 32727777 ~ 32732290 (-) |
| G2130086 | NA | non-coding | upstream | 166583 | 32822026 ~ 32822820 (-) |
| LOC110508997 | NA | other | downstream | 398086 | 32228406 ~ 32230258 (-) |
| asip2b | agrp2 | other | downstream | 463278 | 32062049 ~ 32187519 (-) |
| LOC110508982 | NA | other | downstream | 599742 | 32023057 ~ 32029225 (-) |
| G2128568 | NA | other | downstream | 745160 | 31882715 ~ 31883140 (-) |
| LOC110508968 | LOC106598866 | other | downstream | 890808 | 31708667 ~ 31761665 (-) |
| G2130393 | NA | other | upstream | 743104 | 33398547 ~ 33399084 (-) |
| G2130771 | LOC106598333 | other | upstream | 1384763 | 34040206 ~ 34066665 (-) |
| G2130780 | LOC106598333 | other | upstream | 1385995 | 34041438 ~ 34068073 (-) |
| LOC110509052 | LOC106598333 | other | upstream | 1386126 | 34038788 ~ 34058344 (-) |
| G2131621 | NA | other | upstream | 1830426 | 34485869 ~ 34486176 (-) |
