pfn2l (LOC106598797)


Basic Information

Item Value
gene id pfn2l
gene name LOC106598797
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32631289 ~ 32700844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589942.2
CTAAAGCGCCAGTGAGTCCATTGTGCGGAGTGATCTGACGCAGACTACACCCATGCACTGCCTGATTACATTGGCTTTCTTTACTGCCCGAGCCAAGACGTGTGTGAACGTCGAAGTGGGGGGTACAATTAGAGACACTCAATTGATCCGTAAGCAGCGCAAAATCGGCTGTAACTGTCTTATCCCATAAACTACACTTTGGAGTTCATAGGGAGCTGTATATTTCAACATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCGGATGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAACAACATAACGCCTCAAGAAATTGATGTTCTCATTGGAAAGGACAGGGCTAGCTTCTTCACCAACGGCATGACCTTGGGTTCGAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATATTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACATACAACGTCACTGTAGGCAAAGCCGGAAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCACGGAGGTGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCAGGGTTCTAGTGTCACCAAGCTTGCTTAGTTAAAATTGAGGGACAAAAAGAAGAGAAAATAAAATATTGCTGTTAAGATTTCTCCTGCAAGCAGTCAAATGTCGTGGAAACTTTAATAGCAATGGAGAGTAATGGTGGCGGTAAGGTCCTATGTCACCTTTATCCCCACTTTTAGCGGGGAAAAATACTTTCTTGTCAATTTGTCATTTTTCCTTTTGTTTCCTTGTGTG
>XM_021589941.2
TAAAGCGCCAGTGAGTCCATTGTGCGGAGTGATCTGACGCAGACTACACCCATGCACTGCCTGATTACATTGGCTTTCTTTACTGCCCGAGCCAAGACGTGTGTGAACGTCGAAGTGGGGGGTACAATTAGAGACACTCAATTGATCCGTAAGCAGCGCAAAATCGGCTGTAACTGTCTTATCCCATAAACTACACTTTGGAGTTCATAGGGAGCTGTATATTTCAACATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCGGATGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAACAACATAACGCCTCAAGAAATTGATGTTCTCATTGGAAAGGACAGGGCTAGCTTCTTCACCAACGGCATGACCTTGGGTTCGAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATATTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACATACAACGTCACTGTAGGCAAAGCCGGAAAAGCATTGGTTTTAGTCATGGGAAAAGAAGGGGTCCATGGCGGACAGCTCAACAAGAAAGCATTTACTATGACTGAGTACCTGAGGAAGTCTGGATTTTAAGGCAGCCTGTCTACCCACCTAGCAGTTCCCTCTGGCTCCCCATCATTGTGTTGACAGTACTTCCCGGATTAGTTAGCAGATGCATTTCTCTCCCAGTTCCATTTTCATGTACACCcttttatatttttttcatgtgaattcattttttttttttttttttttttgctcccaTCTCCCTGTTCTTTCTCAGAGTATTAACACTACAGTATGTTCTCAACTCTATTTCTGACACTACAATAACAAATTGTGGATGTTTATATTTACCAAAACACATGTGCAAAGAATTGAATGATAATGTAATAAAGTGTATACCAAATTTGGACTTGGCTTGTAAAAACAAATGATGAGGAATCACACTGTGAATGGCTGTCATTCAATGGTGCAGATAGTTTTGGGTGGGACAATACCTTATGAGCATACTGAAGAGATCACCGGCTGGTATTGTTTTCCTTTTCTCCGGGTGGCTTCCATGTCAGGATTTGAAAGTTGCATGCATATCTTTTAGCAGGGTTGAGGTTAATACCATTTTCTTTCCAGACAATTCAGAAAGTTAACCTGAATTTCAGTGTAaatcctgaattgaaatggaattgaccctaaccctgtctTTAACCATACAGAGTTGAACTCTCCTTGCCCTTCCCAAAACTTTTATATTCCCgcaaaatgttatttttattcAGGCTTCaattttttgctttgttattggaTACTACATAAATCCAGAATAATCCTCTATACATACACCTTAAAACCCCTGTCAGACCACTTTTTTTTCTTTTGCATTGTCTTCCATCAAATGCTTTTGCTGTTGTAACTTGAATGTGGTCTTACACGTCATTGTGGTGTTGGAATATTGTAATGGCAGATCAAATCAGTATTGCTGAGGTTTTTTGTTGATAGAAATTCCTcccatgaacccccccccccccccacgacaTCTTGAAGTCTCCATGGACATTCCATCTGCCAGCTCCTGTATTTCACGCTGCCGATTTGTGCAGCGTATCATCCAGACTCCCTACATAACCATGTTTTGTCAAGTTGGCAAGTTATATTTTCCATAGGACCAATTGTTATGTCACAGTTAGGGGATTTTTCAGAATGGCTTCAAGTCATTGTGAAGGATGATTGTTGTCCTCTGTTTGACTAATCATTAGACTATACTTCAGATGACTGTAAAACACACTGCTTCTTATGATGACTTTAAAACACGAATTGATTTGCTGATAATTTGTTAACAGATAATTGCAGTCTCATTTGACACCTGTGGTAACCAGAGAATTCTCACTGAATGCATTTGACTGTAAACCCAAGCTCTGAATTTATTGCCTAGTGCTCTACTTATCATCATGTGTATCAGCAACTGTCATAGCACGGTACTTAACagtaaattttaaaaaaaaatatatgaaaaaaaaTAGTGATAGTGTGTACACTAAATTTGAAAAATGGTGTTGGTTGGAATAAGAACACTAAGTTGTCTTGTAAAAACTGTGTATCCTGTGCCATAACACAGATCTGGTCTGTTGCTACTTTGAGTTTgatttattattctttttttaaactGCTGCCCCAGCAAGGACTAACTTCAATGGCATTTTCCTTCGGGATAGTTTGGCATCAACCGATAACACTCCAGGCTTTGTGGACTATGTACAgaccaaaaaaatacatttttcccttATGCATTTGGATTCAAAATTATGAAATGTGCATTTTCAAAATTTGGGGAAAATGCTATAAATTTATTCATCACCTTTTGTTTACAGATGGATCAAATAAAAGCTATTCCAACCAGAACTGTAA
>TU2434599
gcctaggaacagtgggttaactgccttgttcagggtcagaacgacagatttctaccatgtcagctcggggatttgaacttgcaacttttcggttactagtccaacacactgccgccctaggctaccctgccgcccatttaaagtacagaataatacgaaatgctctgagaccaggttgattAGTCATTAACTTTTTTCCATATTATTCCTCAAATATCCTAACTCTATCATACATCGTAAGTGCTTAAAAGGCAGTAAATTCAGTAAAGCATCGGTGACAATTATGATATTAAAAAGGTAGCCTATTAAGATATGAATGCcacactactagtactactagcATGCTAAGCTACTAGCAGTGACCTAGACAACAGTTCAATGTAGGTCACAGCCGACAGGAGAAAGGCCAGCCATATGGCCGCATTAACACTGCAATGCAACTTTTTGGACGACCGgacaaaattcacatagaaatgtgagttatatattctcattgaaagcaaatcTTAGAAGCGATAGAGCTGGTCTatatgcactatttctatgcttcccatttttaagttttttttttttttttttttttttttttttttttttttttTAAAATGTCATTCTTTATTACCCCTAGATACAGAGCAGTTCAGAGTACATACAGCCATTGCACATTGAGCGTAGTAAATGAACCCTTATTACCTACATTTTAACCCTTACTTGTAACTCCCACATGTTTAGAACCATgacaacccccctcccccccccccgaaCAAATAGCTAGTAAAGATATAGTAAATCTCTGCCTAACCAATTAATGATGAAGGTCTTGTAAAAGCAAAATGAAAAGCAGACTCAAGCCCTTATGTGGTATTCTCTGATCATGCAGTGGGCCCAACGCATGCAGTTTGATGACTGCGACATTAAAGAGTCTGTGCTTTGTAAAATCTGAACGCTTCTCAGAAAAAAATCTTCTTCCCTGGACACACTGGCACAGGGACAAGAGGTGCAGACACAATAGCTGGGCTGTCTGGGGCTTCCCTCTTCACCACCCCAGATACAACAGGTGCGTCCGTGCCTACAACTGGATCGACTACGAACACAGGGGCCGCTTCGGTACCCACAGGGACCACCACCACGGGGACCACAGGCACTATGGACTCCTCGGACTCGCCAGACTCGCCAGACTCGGCAGACAGAAGGCCGCTGAGGTCGGGGTCGTGGAGGGCGGTGAGTTTGTGGTGCCTCAGGCCGTGGACCTTGGGGAGGTTACCAGCGTGGACGTGGACCACTGGCGCAGGCACCGGGACTGTGCCATTGGTGTCCACGATAGGCATCTGTACATTAGAACGAGAGACAGGTCGTCAAAGTACTGTGTCAGTGCAATGGTTTGTTTTCATGTGGCATTTATTG
>TU2434597
TGCCTGATTACATTGGCTTTCTTTACTGCCCGAGCCAAGACGTGTGTGAACGTCGAAGTGGGGGGTACAATTAGAGACACTCAATTGATCCGTAAGCAGCGCAAAATCGGCTGTAACTGTCTTATCCCATAAACTACACTTTGGAGTTCATAGGGAGCTGTATATTTCAACATGTCTTGGCAAAGCTACGTGGATAACCTGATGGCGGATGGCAGCTGTCAGGATTCCGCCATTGTTGGGTATACGGACGCCAAATACGTTTGGGCAGCACATGCCGGTGGTACTTTTAACAACATAACGCCTCAAGAAATTGATGTTCTCATTGGAAAGGACAGGGCTAGCTTCTTCACCAACGGCATGACCTTGGGTTCGAAGAAGTGCTCGGTCATCAGAGACAGCCTCCATATTGAAGGGGACTGGACAATGGACATCAGGACAAAGAGTCAAGGAGGAGAGCCAACATACAACGTCACTGTAGGCAAAGCCGGAAAAGTCTTGGTTCTTGTAATGGGCAAAGAAGGGGTCCACGGAGGTGGATTGAATAAGAAGGCATACTCAATGGCAAAATACTTGAGGGATTCAGGGTTCTAGTGTCACCAAGCTTGCTTAGTTAAAATTGAGGGACAAAAAGAAGAGAAAATAAAATATTGCTGTTAAGATTTCTCCTGCAAGCAGTCAAATGTCGTGGAAACTTTAATAGCAATGGAGAGTAATGGTGGCGGTAAGGTCCTATGTCACCTTTATCCCCACTTTTAGCGGGGAAAAATACTTTCTTGTCAATTTGTCATTTTTCCTTTTGTTTCCTTGTGTGCTCCAGCATTGGTTTTAGTCATGGGAAAAGAAGGGGTCCATGGCGGACAGCTCAACAAGAAAGCATTTACTATGACTGAGTACCTGAGGAAGTCTGGATTTTAAGGCAGCCTGTCTACCCACCTAGCAGTTCCCTCTGGCTCCCCATCATTGTGTTGACAGTACTTCCCGGATTAGTTAGCAGATGCATTTCTCTCCCAGTTCCATTTTCATGTACACCcttttatatttttttcatgtgaattcattttttttttttttttttttttTAAAATGTCATTCTTTATTACCCCTAGATACAGAGCAGTTCAGAGTACATACAGCCATTGCACATTGAGCGTAGTAAATGAACCCTTATTACCTACATTTTAACCCTTACTTGTAACTCCCACATGTTTAGAACCATgacaacccccctcccccccccccgaaCAAATAGCTAGTAAAGATATAGTAAATCTCTGCCTAACCAATTAATGATGAAGGTCTTGTAAAAGCAAAATGAAAAGCAGACTCAAGCCCTTATGTGGTATTCTCTGATCATGCAGTGGGCCCAACGCATGCAGTTTGATGACTGCGACATTAAAGAGTCTGTGCTTTGTAAAATCTGAACGCTTCTCAGAAAAAAATCTTCTTCCCTGGACACACTGGCACAGGGACAAGAGGTGCAGACACAATAGCTGGGCTGTCTGGGGCTTCCCTCTTCACCACCCCAGATACAACAGGTGCGTCCGTGCCTACAACTGGATCGACTACGAACACAGGGGCCGCTTCGGTACCCACAGGGACCACCACCACGGGGACCACAGGCACTATGGACTCCTCGGACTCGCCAGACTCGCCAGACTCGGCAGACAGAAGGCCGCTGAGGTCGGGGTCGTGGAGGGCGGTGAGTTTGTGGTGCCTCAGGCCGTGGACCTTGGGGAGGTTACCAGCGTGGACGTGGACCACTGGCGCAGGCACCGGGACTGTGCCATTGGTGTCCACGATAGGCATCTGTACATTAGAACGAGAGACAGGTCGTCAAAGTACTGTGTCAGTGCAATGGTTTGTTTTCATGTGGCATTTATTG

Function

NR:

description
profilin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589942.2 False 869 mRNA 0.45 3 32673745 32679940
XM_021589941.2 False 2457 mRNA 0.40 3 32673746 32681853
TU2434599 False 1404 TUCP 0.45 3 32631289 32700844
TU2434597 True 1882 TUCP 0.47 4 32673803 32700844

Neighbor

gene id symbol gene type direction distance location
LOC110509005 NA coding upstream 50938 32614567 ~ 32622807 (+)
nmur1b LOC106599180 coding upstream 83864 32581133 ~ 32589881 (+)
LOC110508222 LOC106598808 coding upstream 270252 32374691 ~ 32403493 (+)
LOC110509002 LOC106599181 coding upstream 304830 32363038 ~ 32368915 (+)
LOC118944910 NA coding upstream 400768 32272798 ~ 32272977 (+)
LOC110509009 LOC106598794 coding downstream 3683 32685536 ~ 32690499 (+)
LOC110509011 LOC106598790 coding downstream 28742 32710595 ~ 32718847 (+)
zbtb41 zbtb41 coding downstream 77313 32759166 ~ 32803922 (+)
LOC110508224 kcnt2 coding downstream 132851 32814704 ~ 32836798 (+)
LOC110509022 b3galt2 coding downstream 191078 32872931 ~ 32911932 (+)
G2129310 NA non-coding upstream 41088 32632050 ~ 32632657 (+)
G2129271 NA non-coding upstream 61982 32611013 ~ 32611763 (+)
G2129262 NA non-coding upstream 81599 32591894 ~ 32592146 (+)
G2129242 NA non-coding upstream 110048 32563462 ~ 32563697 (+)
G2128835 NA non-coding upstream 315399 32358142 ~ 32358346 (+)
G2129353 NA non-coding downstream 40300 32722153 ~ 32722430 (+)
G2129355 NA non-coding downstream 44728 32726581 ~ 32726881 (+)
G2129356 NA non-coding downstream 45350 32727203 ~ 32727638 (+)
G2129357 NA non-coding downstream 45945 32727798 ~ 32728930 (+)
G2129358 NA non-coding downstream 49443 32731296 ~ 32731575 (+)
G2128753 NA other upstream 399365 32269318 ~ 32274380 (+)
LOC110508984 NA other upstream 618090 32053231 ~ 32055655 (+)
G2128614 NA other upstream 725443 31945164 ~ 31948898 (+)
G2128189 NA other upstream 933675 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 1030283 31594783 ~ 31643462 (+)
G2129371 crb1 other downstream 67075 32748928 ~ 32749568 (+)
LOC110509024 LOC106598521 other downstream 376444 33050612 ~ 33070407 (+)
G2129639 LOC106598496 other downstream 626245 33308098 ~ 33308991 (+)
G2129708 NA other downstream 749898 33431751 ~ 33432107 (+)
LOC110508999 NA coding upstream 356909 32269215 ~ 32274380 (+)
G2128834 NA non-coding upstream 273587 32357478 ~ 32357702 (+)

Expression


Co-expression Network