LOC110509009 (LOC106598794)


Basic Information

Item Value
gene id LOC110509009
gene name LOC106598794
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32685536 ~ 32690499 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589943.2
TCTTTCAGCACACTGATGTGGTGGTCTTGTGTGTTTGTGAAACGCGATTTTAGTCCGATGGCATGGAAGGCAAAAGGGGAGCGTCTCTCTTTAGTATGTTTAGGGCTAGTTGTCGTAGTATTGAACTCCTTTGGTCAGTGCGCTGCAGTAACACAAACAAGATCGTCAAAATCCTCCATTGTCCTGGGACCCCATTTGAAGGGGAATCTTAACAATGGTGAAGAGGAGCAGTCTACAGGTGCTGTGCGATTTGGAAGGCTTATACTTGGACGTAATGTCAAACCAAGAAATGCGAGTTTTTCTACTGATGAACATACTGTCTCCAAAGTCCGATCCTCCAATGGTTCACTGGATGATGCTGACTACCAGTCTGACATGGGTTGGGAACCTAAGCAGCTGGGAGGACATGTTTATGGCACAATTAGGCCAAGTAGTCCAGTGGTGGAAAGTCTCTTGCAGATGGAACCAAGTGTTGAGTGTGTTGGCGACTCCATGAAACTAAAGGTCCATGACACAGGCTCTACACCAGGTTCTCTCTTTTCTGTGGACCGAGGAAATCAGTCTCCCCTGCCTCTGTCACAGTTGCCCACAAACTGTGGTCATTCCATCAGCACCACTCACCAGGATTGGATTTTCATTGCAATCTATAATGGCTGTTATGTCACACTGGAGGATGGTAATTATGTTCTGCCTTTGCGTTGGTGGGGATTACCAATTAAAATGTCCTGCCCTGCCAAAAAACCCTTTAAGCCCAACCCTCCTACTGTTTCCTGCTACCCTGAGGGCATGGTGGTGAAAATTGAAGGGGGCACCTCTGCCAAGGATCTCAGGGTCAAGTTCAAAGGACACTGGCAGCCGTTGATGAGCGTTTCGCCCCATTGTGGCTACAGTGTGGTAGCTCATCTAGAAGCTGTGACCATTTCTGCTCATTATGAACCCTGTGTGGAACCTAAGGATGGGATGTTCACCCTTGAACTTGCTGGCGAGGGGGAGGTTAAAGTGTCCTGTCCTAGTCCTGTTGACCAGTCTTTCCCTCGCCCCAATTACCCCCAAACCCCTGTGTTTCCGGTTCCTCCCACCATTGCGCTTCAACCAAGTCCAATGTTTCCTCCTCAGCCTACTTCACCCCCTAAACCCCAGGCTCCACTGCATCCTTACTACACAAAGCCTGCTGAGAAGCCAAAACCTGCTACTCTACCTCCTGGTAACCCTCAGTATTACTTTTCCTTCTACCCTCTgcctgcaactcctccccctgcTACCAAAGTTCCTCAGGGCCATGAACAACATCCTGACTACCGACATCCCAAGCCTGTAACTAGCTCTCCACCTAATGACCCCCAGCCTCCTTGGTATTCCGAGTCCTTCTACCCTCGACCAGCCAAGCCTGTAACTAGCTCTCTACCTAATGACCCCCAGCCTCCTTGGTATTCCGAGTCCTTCTACCCTCGACCAGCCAAGCCTGTAACTAGCTCTCCACCTAAAGACCTCCAGCCTCCTTGGTATTCAGAGTCCTTCTACCCTCGGCCAGCTGAGTCAGTTACTCGTATGCCTGGCGAACTTCCCCCTGCAACAGAAGCTCCAAATGACAAGGTGTACTATCCTTACGACCGATATCCTTATGACCCTCAGCCAGCCAAGCCTGTAACTCATCCTCCTGTGACTCAAAGGCCTGCTACTGAAAAGCCAACATCTCCACTGCATCCTTACTACACAGAACCTGCTACGCATCCTCCTGTGAACACTCAGTATTACTTTTCATTCTACCCTCTgcctgcaactcctccccctgcTACCAAAGTTCCTCAGGGCCATGAACATCCTGACTACCGACATCCCAAACCTATAACTGGTTCTCCCCCTGAAGACTACCAAATTCCTTGGGATTCCTTTGACCCTCAACCATTTAAGCCTGCTACGTATCCTGTGACTCCAAAGCCTACACCTGCCATGCTTCCCCCTGCTACTGAAAAGCCAACAGCTCCACTGCGTCCTTATTACCCAAAACCTGATACTCTGCCTCCTGGGAACCCTCAGTATTACTTTTCATTCTACCCTCTGCCTGCTAAGCCTGTAACTCCTCCCCCTCAAGTGTCTACTCCTGCTACCAAAGCTCCTCAGGGCCATGTGCAGCATCCTTACTACCCACATCCTCTCTATCCACCACATCCCAAGCCTGTAACTGGCTCTCCCCCTAAAGACCCCCAAATTCCTTGGAATTCCTTTGACCCTCAACCATTTAAGCCTGCTACGTATCCTGTGACTCCAAAGCCTACACCTGCCATGCTTCCCCCTGCTACTGAAAAGCCAACAGCTCCACTGAATCCCTACTACCCACATCACTACCAACAGTTCTACCCTGAGCCAGCTAAGCCCATTACAATCCCACTTAGGCCTGCAACTCAAACACCAGAACAAACGCCACTTGTAGTCCACACATGGATACCTGCTCCTCAACAACCTAGTCATCCAAGAACTACTCAAGCACCTCCAACTGTGTCTCCTAGTTCACCTCAGCCAGGTGACTCTTATCCACCACATCCTGGGTATTGTCCTGCAGTCTGCCCTACTGGTTTCTTGACCTGCTGCCCCATGCCCATATCTttccatcaacaccaccacaaccattTTGGCCCTGTAACATCCAAGGATAGTGGTATCATTCCTGCTTACCCTTTCAAACATACATCTGACCTGTTCAATTATGCTTCAGTTTCTGGACCTACCCAAGCCACTACAACCCCACAACCTATAACGGTTCAGACCGTTGCCCCCACTAAAATGGCCTTGACTGGTTTCCATGACTACTGGAGTCAGCATGGAATGAGGTTTTCGGCTTCGTATGCCCAAGCACCTAGTGATGCCAACAAGCCCTCAGAACCCCAACGTCCAAAGCAATCACATTTTCAGCCTTACAACCCACAGCCGCCAATGCGCCCATATTTTGAAGCACCTGCCAGTGACTCCAACAAACCTATGGCACAGCAACAACCAATTCAGCCATATCTGCCCCATAACCTACAGCGGCTTATGCATGCATATCCTCTGCCATACAACCCACAAGGTCCAGTACAGCCACATGGCCAAGCACCTGTTTATTCTAACAAGCCCTTGGAACTTGAGCGACCTGCCAGTGATCCAAGTAAACCATCTGAACCTCAATCGCTGTCTAGTGACCTCAACAAGCCCTTAAAACCCCAACCTTCAAAGTGGCCACATTATCCTTTCAGACCTCCAATGTGGTATGACCCTGACATGTTCTACGCATCCAAGCCTCTGCTGCAACCACACCACCAAACCCAACTGTCTGAATCTGCAATGCAGATGCATAGCACACTTGAACAACTGAGTCCTCCAGAACATCCGCTTCAGCCTCCAAGACCAGTCAAGGAACTGGGTGGCTCCCTTCCCATTAATTCGAAGGGTATCTCTAGCCTTCAGCAACGAAACCCCTCAGGCCATCAAATGCCTACCCATTACGGCTCATTGCCAATATATTATGCTGGTGCCAAACCATCCTACCCCCAGAAACCTGCAGCCAAGCCTTCTGGTAAACCCTCCAGACCTGAATTTCCAGAGTCATTTGAACACTATTGGAAGCCCATTGTGCCACTAGGGCCTAACGAAGGGTTCCATGTCTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCCGGCCCAGTCCGCAGGAGGTTCTTACCATTTAGTTAGCGGCCGGGATGCTCGACCCTTCTCATCCTTCAGTTAATGGTGTTGATGCCGACCCAGAAGCGGTCATGTTTTCCCAATAAAGTAATTAACTGACAA

Function

NR:

description
proline-rich extensin-like protein EPR1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589943.2 True 4238 mRNA 0.52 7 32685536 32690499

Neighbor

gene id symbol gene type direction distance location
pfn2l LOC106598797 coding upstream 3683 32631289 ~ 32700844 (+)
LOC110509005 NA coding upstream 62729 32614567 ~ 32622807 (+)
nmur1b LOC106599180 coding upstream 95655 32581133 ~ 32589881 (+)
LOC110508222 LOC106598808 coding upstream 282043 32374691 ~ 32403493 (+)
LOC110509002 LOC106599181 coding upstream 316621 32363038 ~ 32368915 (+)
LOC110509011 LOC106598790 coding downstream 20096 32710595 ~ 32718847 (+)
zbtb41 zbtb41 coding downstream 68667 32759166 ~ 32803922 (+)
LOC110508224 kcnt2 coding downstream 124205 32814704 ~ 32836798 (+)
LOC110509022 b3galt2 coding downstream 182432 32872931 ~ 32911932 (+)
LOC110509024 LOC106598521 coding downstream 360113 33050612 ~ 33070407 (+)
G2129310 NA non-coding upstream 52879 32632050 ~ 32632657 (+)
G2129271 NA non-coding upstream 73773 32611013 ~ 32611763 (+)
G2129262 NA non-coding upstream 93390 32591894 ~ 32592146 (+)
G2129242 NA non-coding upstream 121839 32563462 ~ 32563697 (+)
G2128835 NA non-coding upstream 327190 32358142 ~ 32358346 (+)
G2129353 NA non-coding downstream 31654 32722153 ~ 32722430 (+)
G2129355 NA non-coding downstream 36082 32726581 ~ 32726881 (+)
G2129356 NA non-coding downstream 36704 32727203 ~ 32727638 (+)
G2129357 NA non-coding downstream 37299 32727798 ~ 32728930 (+)
G2129358 NA non-coding downstream 40797 32731296 ~ 32731575 (+)
G2128753 NA other upstream 411156 32269318 ~ 32274380 (+)
LOC110508984 NA other upstream 629881 32053231 ~ 32055655 (+)
G2128614 NA other upstream 737234 31945164 ~ 31948898 (+)
G2128189 NA other upstream 945466 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 1042074 31594783 ~ 31643462 (+)
G2129371 crb1 other downstream 58429 32748928 ~ 32749568 (+)
G2129639 LOC106598496 other downstream 617599 33308098 ~ 33308991 (+)
G2129708 NA other downstream 741252 33431751 ~ 33432107 (+)

Expression


Co-expression Network