LOC110509013 (crb1)


Basic Information

Item Value
gene id LOC110509013
gene name crb1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32736148 ~ 32751440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966335.1
atgcaggaagcAAAGATATCTGATTGTTTACATATCTACACAGGTGCCATCTGTGAGGAGGACACTAACACATGTGAACTGCTACCGTGTCAGAATGGTGGCGTCTGCGAGAGCCATCATGGAGGCTACAGGTGCCTCTGCTCTCAACAGAGCCAAGATGGCCATCTGTACGGAGGTGAGAACTGTACAGTCGCCCTTCTGGGCTGCGATGGCAACCACTGCAAGAATGGCAGCATCTGCTCTCCCCTCTTCCTGAACGACCGCCACACCTACACCTGCACCTGCCGTGCGGGCTTCACCGGCTCCAACTGTCAGACGTCCACCATCTTCTCCTTCGAGACCAGCGGCTACATGTACGTGGAGACCCAGCTATCGGACCCTGAAGTACCTCTGAACGTCACCCTAAGCTTCAGGACGGACCGGCACGTCGGCACCCTCCTCCAGCGCCGGGTCGAAGACTTGCTGCTCACCATCGAGCTGGTCGACAGCCACTTACGCCTCAGCATGCTAAGAGGTCAAGAGTCAAGAAGGGCAGTGGTTCTGGAGCTACCGCAGAGCGTGTCGGATGGCCAGTGGCACACAGTGGAGGCCTGGCTGGGCAGTGAGGCGGAGGGAAGCGGGATCAGATTGCGTCAGTCCTCCTGTGATGAGGTGGGCTGCACCAAGGAGTTCCCAACCACCGAGACCCCCCTACTGGAGCAAGGCTCCGGCCTCTCCGAGTCCGGCTCAGTCCGTCACAGCCTCTTCCTAGGAGGTGTGGGACTGGGCTGGGGCTCCGGTGTGGTAGCAGGAAAGAGGATGCCTGAGGCTGCTGACCCTTCTGTCCCACTTGTCCCGCCTGCCCACTTCCTGGGCTGCTTTCGGGACGTGTTTGTGGAGTCACGGCTGGTGGTGCCTGCCCCCGCCAACTCACCGGCTCAGATCAACGTCACAGCGGGGTGCAGCGACAAGGACAAGTGTGACGACAACCCGTGTCAGAACCGGGGGCATTGCATAAACCAGGGATGGAGGAGCTATGTGTGTGAATGCTACAGACCATACAAGGGGACTACTGACTGTGCTGAGGAGTACATCACCGCCAAGTTCGGGTACGAGGACGTAGCAAGCTATGCCGTCTTCTCCTTGGACGATCCCCTGGGTTCTGGCACCATCACCATATCCATGTTTGTGCGTACCCGGCGCCCCAGTGGCCTTCTCCTGGTCCTGGCTAACAGCACCAGCCAGTACCTCCGCCTGTGGCTGGATGACGGCCGGGTCAAAGTTCAGGTGAACAATTTTGAGAGCCTGGCGGGAAGCAAAGTGGTCAGTGATGGCCACTTTCACTTGGTGACGGTGCAGCTGGAGGGCGACTCTGTGACCCTGTTCCAGTCGGCCCAGAGCCATGGAACCATTCCCATCCGGCCCGTGGTGGCGCAGCCAGGGGACCTGGTCTACGttgggggcttgtctgaccagaGAGCCTCGGCCTCCTTCGGGGGTTACCTGAAAGGCTGTATCCAGGACCTGAGAATAAACAATAAACGGCTGCAGTTCTTTCCCATAGGAACTTCAGTGGCCTCATACGGTGTGGAGGAGCTGGTCAACGTCACACAGGGATGTATGAGTGACAACGTCTGCAGTAACATCCCATGTCTGAACGGCGGAGTGTGCTACTCCATGTGGGACGACTTTATCTGCAATTGCCCACCCAACATTGCAGGGCGGCGCTGTGAGGTGGTCAAGTGGTGTGAGCTGTCTCCGTGCCCCTCGACCGCAGCCTGCCAGACCCTCTCACAGGGCTTTGAGTGTGTGTCCAACGTGACACTTCGGAATGACAGCATACTTTCCTACAGAGGCAACGGAAAGATCAGGCACCACCTCAGCAGCGTCCTCCTAAGTGTGCGAACCAGACAAACGAACGCCACCCTCCTACACACCAAGAAAGGCTCTGAGTTCATCACCATCTCCCTCCAGGACTCTCACCTCCTGCTAGAACTACAGGCCGGTGGTGGTGAGGCCTCCCCCAAGCTCACTGCCCAGAGCCGGGGCCTGGTCAGCGACGGCAAGTGGCACATGGTGGAGCTCTCCATGGAAGCCCCGGATCTACAGACCTCCAGGTGGATCATTGTCCTGGATGGGGGAAGAGATGGAGTAGAGGAGGAGCATGTTGTGTCCAAAGTCGCCTCTGGGAGCCTGGCCTTCCTCAGGGAGGGAGTGGACATCCTCCTGGGAGGTCTGGGGCCAGAGGCTGGGGGGAATTTGGATGGATGTCTGGGCCCTGTCCAGATCGGGGGGCTCCCACTGCCCTACTATGGAGATACTGACCTGAACCTTCCCAGGCCCCAAGAAGGGCAGTTTGTGAGGACCCCCAGTGCCGTCACCCCCCTATATGGCTGCCGGGGGGCTAGTGTGTGCACGCCGAACCCTTGTCTAAACCATGGGGTGTGTGAGGAACTCTTTGACCTCTCCCTCTGCAGGTGCCCTCCTGAGTGGATGGGGCCACAATGCCAGAATGACGTGGACACCTGCGCCGTCAAGCCCTGTGTCCATGGCAACTGCAgtgtgttgggggagggataTCTATGTGCGTGTGAGCCGGGGTATGGGGGGACCAGGTGTGAGAAGGACGTGGACACGTGTGAGAACAACAAGTGCGGCCCGGAGGCCACCTGTCTCAGAGGCCTCCTGAACTATGCCTGCCACTGCCCCAGGAACATGACCGGGCCCTTCTGCGAATACCCCAACCTGCCCACGTCCGTGTGTCCTGGAGACAGATGGAATTACAGCTGCTTCAACGGGGGGAACTGCTCTAAGCAAGACTACACCTGTGACTGTCTGCCCGGTTTTATAGGGCAATGGTGTGAGGTAGACTTTGATGAGTGTGCGTCGGGCCCCTGTGAATACGGAGGCTACTGCCACAACCTCGTCAACCACTTCCTCTGTATATGTGAGATGAACTTCTCAGGTGACCAGTGCCAGATCGATGTCAGCGACTTCTACTTGTACCTGGCCTTGTTGCAATTCCAATATGTGTTCCAGCTCATGTCCTACCTTATCTTGCACCTCGACGATGGCCCAGAGATCGACTGGGGACAACTGCAAAGAGATGACGACTAG

Function

symbol description
crb1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell projection morphogenesis and establishment or maintenance of epithelial cell apical/basal polarity. Part of protein-containing complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in pigmented paravenous chorioretinal atrophy and retinal disease (multiple). Orthologous to human CRB1 (crumbs cell polarity complex component 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966335.1 True 3096 mRNA 0.58 6 32736148 32751440

Neighbor

gene id symbol gene type direction distance location
ahsg2 LOC106598792 coding downstream 31852 32700038 ~ 32704296 (-)
LOC110509006 LOC106598799 coding downstream 80705 32628300 ~ 32655443 (-)
cpdp LOC106598802 coding downstream 121609 32598428 ~ 32614539 (-)
LOC110509003 LOC106598805 coding downstream 221282 32462184 ~ 32514866 (-)
LOC110509001 LOC106598815 coding downstream 403729 32312071 ~ 32332419 (-)
LOC110509017 LOC106599177 coding upstream 34466 32785906 ~ 32788215 (-)
LOC118944826 LOC106597593 coding upstream 38713 32790153 ~ 32795726 (-)
LOC110509016 LOC106597593 coding upstream 46669 32798109 ~ 32803677 (-)
LOC110509015 LOC106597593 coding upstream 54085 32805525 ~ 32812024 (-)
LOC110509019 cdc73 coding upstream 123999 32875439 ~ 32919614 (-)
G2129953 NA non-coding downstream 3858 32727777 ~ 32732290 (-)
G2130060 NA non-coding downstream 10382 32725294 ~ 32725766 (-)
G2130058 NA non-coding downstream 11678 32723971 ~ 32724470 (-)
G2130055 NA non-coding downstream 15263 32719237 ~ 32720885 (-)
G2129998 NA non-coding downstream 170940 32565005 ~ 32565208 (-)
G2130086 NA non-coding upstream 70586 32822026 ~ 32822820 (-)
G2130088 NA non-coding upstream 72953 32824393 ~ 32825566 (-)
G2130089 NA non-coding upstream 74692 32826132 ~ 32826947 (-)
G2129964 NA non-coding upstream 78577 32830017 ~ 32835141 (-)
G2129961 NA non-coding upstream 119510 32870950 ~ 32872918 (-)
LOC110508997 NA other downstream 505934 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 571126 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 707590 32023057 ~ 32029225 (-)
G2128568 NA other downstream 853008 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 998656 31708667 ~ 31761665 (-)
G2130393 NA other upstream 647107 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1288766 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1289998 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1290129 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1734429 34485869 ~ 34486176 (-)

Expression


Co-expression Network