LOC110509016 (LOC106597593)


Basic Information

Item Value
gene id LOC110509016
gene name LOC106597593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32798109 ~ 32803677 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966228.1
TAATTACCTTGGTTGAATTTAAAAATCCCCAACTCAGACTCAGACTCCAGTTAATTCATTTCTCAGTGTACATGTAACACCAGAGGACAGAGAATGAAGGAAATACCACTGTCTGTCATTATTGTACTACACATCTGGTCCTACGGTGTTAAAGCTCAAGAATCTGGAAAAGGCTGCCAAAGACCCCAACTGGACAATGGCTTTGTTGACCCGGAGCAGAACATGTACCAGGATGGCATGACTTTGACTTATGCCTGTGATAAAGGTCTGAAAACACCAATGGAAGGCTGGTGGGGGATGATTACATGTGAGAATGGTAGATGGTCTGATACTCCTCTGTGTACGGCCAGTCGTTCTTGTGATGCACCTCCTCAAGTGAACCATGCAACCGTTGTTCAACAATATCAAAACAACTTTAGTAATGGATCAAAAGTGGTGTATAAATGTAAAAGATCCTACATAATGGAAGGGAAATCAGATGTAGTCTGCCTTTTAGGAGAATGGACCTCAGCCCCCACATGCAGTGATGAGGCCTCACCCAATGTCAGACCCTCTGCCAGACCACAACCTGGTGGTCCATTTTTACCTGTTGATAGGTGTGGAGAGAAGCCAACAGTTGATAATGGGGATTTTATCAGTGACTCTGACAGAAATCGAATGGCACTGACCTTCACATGCATTAACTATTATAAACTTGTGGGCCCAGAGCAAGTGATGTGTCATAATGATCAAACGTGGTCAGAGCTCCCCATTTGTAAAGCTCCCTGTACCATTGACAAAATGACATTTGACATGCTGGATCTTACAAAAGATATGtttgtgaaggaaggagagagtcaGACATTTCTCTGTAAAGTAACTGATTATTATGAACGACGTCTTGTTGCTGATGTTCGATGTCAGAATGGACGAGGGGAAATTGGCAGATGTACATTGGGCTGCAAACTGGAAAAAAGGGTTAAATATTGGCTGGATCTTACACAGGATATGTTTGTAAAGGAAGGACGTCAGACATGGAACTGTAAACAAACGGATTACAGGGGTCGTCGTCTTGTTGCAGATGTTGAATGTCAGGGAGGATATTTAACCGTACGCAGTTGTTACCAGCTAAACTAATATTTGGCCTGGTGAATCAATGCAACAAACCCAAAGCTGCAGCAAATCCCCTGGAAGAGAGGACTTCCCACGTTGGCCACCAATCAAGATCATGATGTGTTTGATAAATGTGCTTTTACATTTGGTTCATGATATGGAATCTGTCTCATAACACAGGGGGTTAGTAGGggagcagagaggaaaggaggccCACCATCTTAGGATAGGAGGCTGTCTGACAAGATTCAGACAGTCATTCTGAATTATTCAAAAGAAATGAAAAATACATGTTGAACATAATAATGGGAAGGTTGATGAAACAGTTGATCAGCAAAACATTTGATATTGATCCTCTATTCATTTAAAGCAGCAAACTACTGGTAGTCAATGGCAGTCAAATCAATAGAATGTACAGTATACAATGGACATGGATTCATgtagaaaatgtcatggcttggATCTATAAAAGAGATATAAttaga

Function

NR:

description
coagulation factor XIII B chain-like

GO: NA

KEGG:

id description
K23815 CFHR1_2_3; complement factor H-related protein 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966228.1 True 1577 mRNA 0.42 9 32798109 32803677

Neighbor

gene id symbol gene type direction distance location
LOC118944826 LOC106597593 coding downstream 2383 32790153 ~ 32795726 (-)
LOC110509017 LOC106599177 coding downstream 9894 32785906 ~ 32788215 (-)
LOC110509013 crb1 coding downstream 46669 32736148 ~ 32751440 (-)
ahsg2 LOC106598792 coding downstream 93813 32700038 ~ 32704296 (-)
LOC110509006 LOC106598799 coding downstream 142666 32628300 ~ 32655443 (-)
LOC110509015 LOC106597593 coding upstream 1848 32805525 ~ 32812024 (-)
LOC110509019 cdc73 coding upstream 71762 32875439 ~ 32919614 (-)
ro60 trove2 coding upstream 116243 32919920 ~ 32937170 (-)
LOC110509023 LOC106598560 coding upstream 140865 32944542 ~ 32948512 (-)
rgs1 rgs1 coding upstream 151273 32954950 ~ 32957306 (-)
G2129953 NA non-coding downstream 65819 32727777 ~ 32732290 (-)
G2130060 NA non-coding downstream 72343 32725294 ~ 32725766 (-)
G2130058 NA non-coding downstream 73639 32723971 ~ 32724470 (-)
G2130055 NA non-coding downstream 77224 32719237 ~ 32720885 (-)
G2129998 NA non-coding downstream 232901 32565005 ~ 32565208 (-)
G2130086 NA non-coding upstream 18349 32822026 ~ 32822820 (-)
G2130088 NA non-coding upstream 20716 32824393 ~ 32825566 (-)
G2130089 NA non-coding upstream 22455 32826132 ~ 32826947 (-)
G2129964 NA non-coding upstream 26340 32830017 ~ 32835141 (-)
G2129961 NA non-coding upstream 67273 32870950 ~ 32872918 (-)
LOC110508997 NA other downstream 567895 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 633087 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 769551 32023057 ~ 32029225 (-)
G2128568 NA other downstream 914969 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 1060617 31708667 ~ 31761665 (-)
G2130393 NA other upstream 594870 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1236529 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1237761 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1237892 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1682192 34485869 ~ 34486176 (-)

Expression


Co-expression Network