LOC110509019 (cdc73)


Basic Information

Item Value
gene id LOC110509019
gene name cdc73
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32875439 ~ 32919614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589960.2
CCTTGCACTCACGCTCGCTAGTTTCATGAAGACAAGTGAAGATGGCGGACGTGTTGAGTGTTCTTCGCCAATACAACATCCAGAAAAAAGAAATCGTCGCCAAAGGAGACGAAGTTATCTTTGGAGAGTTCTCTTGGCCCAAAAATGTCAAGACTAACTATGTCATTTGGGGAACTGGAAAGGAGGGTCAGCCCAAGGAGTACTACACCCTGGACTCCATTTTGTTCCTGCTCAACAATGTGCATCTCCCTCATCCATCCTACGTGCGAAGGGCTGCAACAGAGAACATTCCGGTTGTCAGAAGACCTGATAGAAAGGGCTTGCTGTCCTATCTCAATGGGGAAAGTTCTACTTCGACAAGTATCGACAGAAGTGCCCCCATAGAGATTGGTTTGCAAAGGCCAACGCAAGTCAAACGAGCAGCAGATGAGGTGTCATCTGAAGCCAAAAAACCCAGGATTGAGGATGAGGAACGAGTGCGACTGGACAAGGAGCGTCTGGCTGCTAGACTGGAGGGCCACAAAGAGGGCATAGTGCAAACTGACCAGATCAGGTCACTGTCCGAGGCCATGTCCGTGGAGAAGATCGCCGCCATCAAAGCCAAGATTATGGCCAAGAAGCGCTCCACCATCAAGACAGACCTGGATGAGGATATCACACTGAAGCAGAGGAGCTTTGTGGACGCCGAGGTGGACGTGACCAGGGACATAGTCAGCAGGGAGCGGGTGTGGAGGACCAGGACCACCATCCTACAGAGCACTggaaagAACTTCTCCAAAAACATCTTTGCCATCCTGCAGTCGGTGAAGGCCAGGGAAGAGGGACGCGCCCCTGAGCAGAGACCAGCACAGAACACCACTCAGGTGGACCAGTCCATAAGGAACAAACAGCCTGTCCCAGCTGCTTATAACCGATACGATCAGGAGAGATTCAAAGGAAAAGAGGAAACGGAGGGTTTCAAGATTGACACCATGGGAACATACCACGGCATGACCCTGAAGTCTGTGACGgaGGGAGCGTCTGCCAGGAAGGCCCAGACACCAGCCCTGCAGCCCGTCCCCAGACCAGTTTCCCAAGCCAGACCCCCACCAAATCAAAAGAAGGGCTCTAGGACTCCCATCGTCATCATCCCAGCGGCCACCACGTCCctcatcaccatgctcaatgccaaggaCCTCCTGCAGGACCTCAAGTTTGTGACgtcagaggagaagaagaagcagGGCATCCAGCGGGACAACGAGGTGCTGCTCCAGAGACGTAAGGACCAGATTCAGCCCGGGGGGGCAACGCTCAGCGTCACCGTGCCCTACAGGGTTATTGACCAGCCCCTCAAACTAGCACCGCAGGACTGGGATCGTGTGGTGGCTGTGTTCGTGCAGGGCCCTGCCTGGCAGTTCAAAGGTTGGCCTTGGCTGTTGCCTGACGGATCTCCTGTGGACATTTTTGCTAAAATAAGAGCCTTTCATCTGAAGTATGACGAGCAGAAGATGGATCCCAACGTTCAGAAGTGGGATGTCACCGTGTTGGAGCTGAGCCATCACAAGCGCCATCTCGACCGGCCCATGTTTCTGAAGTTCTGGGAGACCCTCGACAGATACATGGTGAAACACAAGTCCCACCTGAGGTTCTGAGCCTGGACCGTGGCCTCCTTCCTCCACAGGTCCCGTCAAGGCATTTATAAACCCCCTGCCGCAAACCTagcccccccttcctcctccctgccAGGACTACCTCTAGAAGAGACTGGGTACCCTACTAGCACTTTGGGCTCCAAGAAAAAGCCCCCGTGTTCAGATAGTCCTTCAGGAAAATACCTTCTACCTGGTCTCCATAGTTACAAGCAGCAGATGCAGTATGTCACTCTGGACATGGGGAGGGGAAGTTGGAGCTTCCAATGTTTTTTCAAGTTCTAatgtaaaaaaatgaaaaacaactATATCAAAACTATTTTCTAACATCAGAGCATCTTACTGTGGAGACCGAGGttgaagagagagcgagatggagagagagagagtggacgaggggggatggatagatggaggtGAGAGAAGAAACCTCTTCTCCTACTATTTCCTTTGTGAAATTAATCCTGTACATTCCATGTGAAACATGAGCTGGCTAAGAAGCCCTTCGGAAAATCTGGGTGGTGCAAATTAAAATCATTGCTAACCATAAAGGATATGAGACCTCTGTCAGATTCATTTTCCTGTGTTTTTATTTTCTTAAAGGAACCCCCCAAGCtgcctctcaaatggcaccctactccataTACAGCACACTACTTTGTCTACCCAGTGTCTAAACACAGGGCCCcagtcaaaggtagtgcactacgaatggaatatggtgccatttgtgacagaAACCCAGTTTGACAAAGTGTAGGTAGGCAGCCCATAGAGAATTATAGAGGGCTCTCTTTGTTTCTGTTATGGTGTCAAAGTGCACAGGCAGCGCCATTGATGACATCTCCATTTTTGAAGTTGTGAATTTTCTTCATCTACTACTTCTGAGTTGGGAAACAAAGGGTACGCAGTGTCACCTGGAGTCTGATGTTTGAACAAGGCGAAGgttgatttactgccacctgcagttatggaatgtttgctcaccAGCTAAATTAATTTGCTGATCCCTTCTGGTGACCTGGATGGATTTTGCAATCCTTAAGACATAGGAAGTCCCACCAAGTTGACTACTTGAAAATGGTGGAGGTCCTCAATGGCTCTTCTTTTGGGGCACTATGATGCAGCCCTATAGCATCTGACTGATGTCCCATGCGATCCAAATGTATATATGATATAAGAGCCAAACTTTCCGAAAACAGACTTTGAAGAAAATCAAAAAAGCTATTCTCTTATTGATGCATATCAAAGATCTTTATGATTCAGTGGGATTGATGTGTCAATTCCAGCCTTGGCTCaaaagtgtttgttttttttgtgctGTGCAAATGAAAGGAATGATGACGAACATTGCGTTATGTTATGTGTTCACAGTGCAAATAGATCATAAAGCTGGTAGAGGAACGTC

Function

symbol description
cdc73 Predicted to enable RNA polymerase II complex binding activity. Involved in heart development. Acts upstream of or within erythrocyte differentiation; regulation of transcription elongation from RNA polymerase II promoter; and spinal cord oligodendrocyte cell differentiation. Located in nucleus. Part of Cdc73/Paf1 complex. Human ortholog(s) of this gene implicated in hyperparathyroidism and parathyroid carcinoma. Orthologous to human CDC73 (cell division cycle 73).

NR:

description
PREDICTED: parafibromin

GO: NA

KEGG:

id description
K15175 CDC73; parafibromin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589960.2 True 3039 mRNA 0.49 17 32875439 32919614

Neighbor

gene id symbol gene type direction distance location
LOC110509015 LOC106597593 coding downstream 63415 32805525 ~ 32812024 (-)
LOC110509016 LOC106597593 coding downstream 71762 32798109 ~ 32803677 (-)
LOC118944826 LOC106597593 coding downstream 79713 32790153 ~ 32795726 (-)
LOC110509017 LOC106599177 coding downstream 87224 32785906 ~ 32788215 (-)
LOC110509013 crb1 coding downstream 123999 32736148 ~ 32751440 (-)
ro60 trove2 coding upstream 306 32919920 ~ 32937170 (-)
LOC110509023 LOC106598560 coding upstream 24928 32944542 ~ 32948512 (-)
rgs1 rgs1 coding upstream 35336 32954950 ~ 32957306 (-)
LOC110508225 LOC106598102 coding upstream 42882 32962496 ~ 32964152 (-)
rgs18 rgs18 coding upstream 49335 32968949 ~ 32973868 (-)
G2129961 NA non-coding downstream 2521 32870950 ~ 32872918 (-)
G2129964 NA non-coding downstream 40298 32830017 ~ 32835141 (-)
G2130089 NA non-coding downstream 48492 32826132 ~ 32826947 (-)
G2130088 NA non-coding downstream 49873 32824393 ~ 32825566 (-)
G2130086 NA non-coding downstream 52619 32822026 ~ 32822820 (-)
G2130162 NA non-coding upstream 93765 33013379 ~ 33019915 (-)
G2130229 NA non-coding upstream 186258 33105872 ~ 33107219 (-)
G2130236 NA non-coding upstream 201552 33121166 ~ 33121566 (-)
G2130241 NA non-coding upstream 211982 33131596 ~ 33131887 (-)
G2130258 NA non-coding upstream 248312 33167926 ~ 33168125 (-)
LOC110508997 NA other downstream 645225 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 710417 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 846881 32023057 ~ 32029225 (-)
G2128568 NA other downstream 992299 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 1137947 31708667 ~ 31761665 (-)
G2130393 NA other upstream 478933 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1120592 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1121824 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1121955 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1566255 34485869 ~ 34486176 (-)

Expression


Co-expression Network