rgs18 (rgs18)


Basic Information

Item Value
gene id rgs18
gene name rgs18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32968949 ~ 32973868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124640.1
GGGTTAAAGGAGCACTAAGAACTGATTGTGCTCTGCTTTCATATATGCTAAAGTTAGAAGGAAGCTAGAATGGAAACACTTGTTTTTCTGTTTCCTCAATTGAACTTTTTTGCCCCAAAAGAGGAAGCATATTTCAAAATGCTCTGTCCTGAGGACTTGTTGGCACCGAGAATGAAAGCTAGTCATTTCAGATTGAAAGACAAGAAGAGCCGACTGAGCCTTCTGCTGACCAAGTCAGGCTCCCATGAAAACATCAGTCCAGGAAAAAAGACAGCCACCACCAACAACAACATCTCACCAGAGGCAGCGTTGAGATGGAGCGACTCCTTTGAAGATCTGATCAGACATTCAGACGGAGTGGAGTCGTTCTCTCAGTTCCTCAGGACAGAGTTCAGTGAGGAGAACATTGAGTTCTGGTTGGCCTGTGAGGAGTACAAGACCATCGACTCGGAAATCCGGCTCATCTCCAAAGCCAAGCACATGTATTCTGTCTTCATTGAAGCCGAGGCCCCAaaagagGTCAACATCGACTATGCCTCCAAGGTGGCCATCCAGAAGACCATGGCTTCGCCGACGAATACCTGCTTCGATGCGGCGCAGAGCAAAGTCTACAGCCTGATGAAAAAAGACTGCTACCCAAGGTTCCTCACGTCAGACATCTACCTGCACCTCACCAAGAGAAAAGGCCCCGGGACCACCATGTACCGCCGGAGGTCACGGTCCTGCGTTTTCAATGAGCCGCGAGGGGAGGCCACCAGCGACTCCTCTGACTGGTTGTAGCATCGTAAGCCGAGAGTAGcacaatacacacactcacacacacacacagacacacagacacacacacagacacacacgcaccctTCCAAATTCCCTTGCAGTGCAATGCCTGTCGCTGACTAGTTGTGTGATTGTGGAAAGCTGTACCTTTTTAATGAGAGACTTTCTGAAGAGATTTGACTTTACAGCTATCAATTAAAATGTTCCCCATCTAGACAGCAAACATGAACAGACCGTGTAAGAATACTAATATGCAATATTCATCTTGTTTACCGTTAAATGTCTTGCCACTGCTTGTATTAATTCaataatttattataataatatgtTATGTTGGCTTTTAGTTGTAACTTGTATATATTGTCTGGAGAGTAATTATTGGAATAAACAACATattataaaaa

Function

symbol description
rgs18 Predicted to enable GTPase activator activity. Acts upstream of or within anterior/posterior axis specification; sensory organ development; and thrombocyte differentiation. Is expressed in brain; eye; otic vesicle; and presumptive brain. Orthologous to human RGS18 (regulator of G protein signaling 18).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124640.1 True 1184 mRNA 0.45 5 32968949 32973868

Neighbor

gene id symbol gene type direction distance location
LOC110508225 LOC106598102 coding downstream 4797 32962496 ~ 32964152 (-)
rgs1 rgs1 coding downstream 11643 32954950 ~ 32957306 (-)
LOC110509023 LOC106598560 coding downstream 20437 32944542 ~ 32948512 (-)
ro60 trove2 coding downstream 31779 32919920 ~ 32937170 (-)
LOC110509019 cdc73 coding downstream 49335 32875439 ~ 32919614 (-)
LOC118944830 NA coding upstream 176137 33150005 ~ 33153414 (-)
LOC110508227 LOC106598474 coding upstream 304686 33278554 ~ 33307293 (-)
dynlt5 tctex1d1 coding upstream 336135 33310003 ~ 33313291 (-)
LOC110509030 LOC106598456 coding upstream 339565 33313433 ~ 33381200 (-)
LOC110509034 LOC106598452 coding upstream 432805 33406673 ~ 33514461 (-)
G2129961 NA non-coding downstream 96031 32870950 ~ 32872918 (-)
G2129964 NA non-coding downstream 133808 32830017 ~ 32835141 (-)
G2130089 NA non-coding downstream 142002 32826132 ~ 32826947 (-)
G2130088 NA non-coding downstream 143383 32824393 ~ 32825566 (-)
G2130086 NA non-coding downstream 146129 32822026 ~ 32822820 (-)
G2130162 NA non-coding upstream 39511 33013379 ~ 33019915 (-)
G2130229 NA non-coding upstream 132004 33105872 ~ 33107219 (-)
G2130236 NA non-coding upstream 147298 33121166 ~ 33121566 (-)
G2130241 NA non-coding upstream 157728 33131596 ~ 33131887 (-)
G2130258 NA non-coding upstream 194058 33167926 ~ 33168125 (-)
LOC110508997 NA other downstream 738735 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 803927 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 940391 32023057 ~ 32029225 (-)
G2128568 NA other downstream 1085809 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 1231457 31708667 ~ 31761665 (-)
G2130393 NA other upstream 424679 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1066338 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1067570 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1067701 34038788 ~ 34058344 (-)
G2131621 NA other upstream 1512001 34485869 ~ 34486176 (-)

Expression


Co-expression Network