LOC118944861


Basic Information

Item Value
gene id LOC118944861
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33513572 ~ 33520317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040252.1
TAACATCGCAACATGGCTGTGTGTAAAAATGCTGGCTGGATAGACCATTATTTTGGCTATGCCCACATGACTGCCGACTCAGGGCATTGACTGGTTTGATGCGCATGAAAACCatatggccgtctcagtcaccagagctcaacccaattgaacactttcccccaccatcaacaaaacaccagacGATGGACTTTCTTGTGGAAATATgttgtcgcatccctccaatagagttccagtgGAACCTataccaaggtgcattgaagctgttctggctcgtggtggcacaACGCCCTGTTAAGACTCGGTTTGTTTTCactttattttggtagttacttTTACCCTTCAATAAACTTGGCTTCTCTCATGAGTTTAACCTAATGGTCGCATACTCAGTGAAAGGCACAGATGTACGCTGTTTTAGGTGAAAGAGTTATGCAAAACAGACAACCTAGTAACCTACACAAGATTATGGGATGAGATGAACAGAAAGCAGTCCTCAAACTATCTATTTGAGATGTTAGCATACCTAGGCTACACTGTAGCAACTTCTAATTTATCCACACCTTGGTAATAGTCGAATGCAAGATGACATTTGTTACCACCGGGCAACATCTACGTGGAAAAACTAACAACGTGGGGTGCATGGACGAGAACTACAGGTTTCTGGACTTGAAAGGGACAACATGGGACATCTGTGTGTTTGAGGAAGATCATAAAGGACTCGAACCACAGACTTTTCACTGTTACCATCTGCTGAGCGGTGTTGGAGCATCGGGTCTCGGACgaacaggctccgagacagcttctaccgccaggccatcagactgctaaacagctaaCCCTAGCTGTCTCCCTGCGCAGACATGCACCTTAGAccctagctgtctccctgcacaGACATGCACCTCAGACCCTAGCTGTCTCCCTGCGCAGACATGCACCTTAGAccctagctgtctccctgcacaGACATGCACCTTAGAccctagctgtctccctgcacaGACATGCACCTCAGACCCTAGCTGTCTCCCTGCGCAGACATGCACCTTAGACCCTAGCTGTCTCCCTGTGCAGACATGCACCTTAGAACCTAGCTGTACCTTAGAACCTAGCTGTACCTTAGAACCTAGCTGTACCTTAGAACCTAGCTGCACCTTAGAACCTAGCTGCACCTTGTTCATTATCTGTTCTATATATTCTATTGCTATTCTGCAAATCCATTCACAATCTATTCAGTATATCGTATTGTGTACTAAGCATACTACATCTTCTATTACGTGTAATTTTGTATTTGACCTATTAATGTTGATTATTGTACTGCAATGTTGAGGGAACTAGCACACAAGCATTTCCCTGcaccttttatacctgctgtaaactgtgtacaTGACAAAAAAAATGGATTTGATTGAAAGGTTAAGTCTATTTGTGATGTCTCatactaaagaaaaaccctgtttAGACCAATCATCTGAATTTAGGGTCAGGCTCCAATTGACAATTGGTTAGTGTCCAAATAACatcctccctctgcctgtctcttGATGTATCCCTCTTCAGCTCTCTCTCCCGTGGGGAGCTCTTCACAGAGATTTCTCTAGTTATTATGGCTGCTGTGTAAATCCAGGTGTCTACTAAAGTGCTCCATCCATGAATAATACTCAGGGAATGGCCATGGTATACAGACAGATACAATGATTCTGTATAGAAATACTTCCTGTGGttgactacaacaacaaaaagggtCAAGTGATCTAGTTAAATCAGCACATCACTCAATTTGTTAAATGTTGCATACAGTACAACAATCTCAGAAGAAACTAACGACTGTACCATTATTAATACGTCTAAGTATATCTGATTCAGTAATACGTTTTCCTAAaatggatctctctgtacttaacCAAGTCTCCTGTGTGACAGTGCCAGCAAACTGCACTTGTGTTGTGGTCTTTCTGTCCCAatggtctctccctctcctttgtgatgtaaaactgcaaaaatattGGACTCAAAAAATGGCCATTGAAATATTGACatataaaaaaaagaaatgttttatttcaagTGTTTTAATTAATGTTAGAAAACAGACTGTAGTTTTTTTGTCAGGAGTTTAAATACAGGTCTCTAGTGCCCTCTAGTGTTTTGAAAGTGATGTGTTAAGTTTCGAGTTGACGCCTACAGTACATGTGCAACACGAAGGCGTCATAATGAACGATCGCTCTtaaaacaatgtttatattcatgAGATAAGATCATGTAGAAATGTTAGATATGTTTTTCTTTGGTGGGTGATTATATTTGTCCTATTACACATGCACAAGTGTATCAATAATACACACACGAGTGAAATGGAAAgtcatattttttgt
>TU2435127
GTTTTAATTAATGTTAGAAAACAGACTGTAGTTTTTTTGTCAGGAGTTTAAATACAGGTCTCTAGTGCCCTCTAGTGTTTTGAAAGTGATGTGTTAAGTTTCGAGTTGACGCCTACAGTACATGTGCAACACGAAGGCGTCATAATGAACGATCGCTCTtaaaacaatgtttatattcatgAGATAAGATCATGTAGAAATGTTAGATATGTTTTTCTTTGGTGGGTGATTATATTTGTCCTATTACACATGCACAAGTGTATCAATAATACACACACGAGTGAAATGGAAAgtcatattttttgttgttgttgaaagttTGTTGTTGCATATGGCCACTCTCTCTGAAACAACTTTCAATAGACCCTTCAGTGAAAATAAGACATTGATTGGAAGTAGGCCTACTTTCTACTTAGTGATTGCATGTTGCTAAAGCTAAGTATAAAGTCGTTTGGTTACATCTGGTCACtaatgtactatatatatatatatatatatatatatattttttttttcaggcTTTACCAGTACAGAATGTAAAAAGTGACTTAAGTtatataaaacatttttgaataagtacattttttgttgttgatatttAACAGGCACTTGTCAATGAGTTTTTTGGTGAATAGAAATGTGGGCACTTCATTTGAACACAAACAGACCTGGTCTACAAAACATATAGTGTTTACATTCCCATACTAATGTAGACAATGATTCACAAACCCTTACGTTAGCCTCTGTCCTCAGTGAAGACAAACAGCTTATAATGGCATAACAATGTTGTTTTCATAATTAATATGAACTGTGTGTTTCATAATCATAGACACATCAGAAACCTTAGTGGGGGGAATGAATCATGTCTACCTTATTTTCTTAAAAATGGCCTTTGGTATTGGTGGAAACATTTGCAGAAGGGCAACATGTTGAAAAcaacaaactacagacagaaacCTTGACCTGGTTATGAAGTCATACCCAAAGTGATCATAtgaaatagaaacatacaaacaaaaaaaaaggtaCACACACAATCAACTGTAAGAATGAGTAGATCATTTGAAATGCTTACGCTTAAATAAGATTTCCACAAACAAACAGAATACTCCCtaaatgaagtggaaacagacGGCGTAGTGGTGATTACAACAAATCATTCAACAGTATCCCTCATAACACACGTACAAGTTATCATGATCCTTAAACTAGCATCTGGCTTTATAGATATGAATGTAGAGAGGTGGGCCTGGTCCAGAAACAACCACTCTAGCCCTAGACACTTGTGTAGATGTTAAAAGAACGTTTCCCCTTGGTGATATTTCACCACATGCTTACACCTATCCTGTCTTCTCACTGAGATCAACAAGTTcctagggagggggggggctggcCGGGACACTGGTTTTCAATGACTCTCCCTCAGCATAGGGGACAGGTAAGGCAAAAAAAGGTTGAAGAGAATAATGGAGCGAATACTATAAGAAAAAACGATCAGGTGTCTGTGGAGGAAAAAAAGGACAGACATCGCAGTGTGCATTAACATCCCAGACACCCTGTTTAGTGCCACCCCCTCCTCACTAACCAGGAGGGGAGGGCACTCCTGGTGCCACCCCCTTTTCTCATAGGACATTAAATAGTCAGCATCAGCTTCTTAAAACGTCAGTTAGTAGCGACGTTATGCCGTAGTAGCGTTTTGGTTTATCATATCTGTCCACCACTGTAACCTTGTTAATAACAGGAATGACTGACTCCCTCCGTCTCTGTGTCCCAATCGATCCCTAGACCCTACACCCTATGCACTTTCAGAGATCAGAGTAGATTTGATTGGTTTAAACAATATGGTGAAACTTCcacctagcctatcagagggcaaggtGAAGCTACTGCCATATTGCTTGCACCGGTCAaatctcagatctccacaagtccaTAGGGCGtagggtctaggggtccatttgggaTGGTGCCAGAGATCCAGACGGTCTACCACTGCTCCCAGCTGAAGTCGTCTCCCCCGCCGAACACCAGGAAGAAGCCCAGGATGGTCAGGAAGATGACAGCGTTGCCAGCCATCACCAGGCCACAGGCCCCCCACT
>TU2435128
GTTTTAATTAATGTTAGAAAACAGACTGTAGTTTTTTTGTCAGGAGTTTAAATACAGGTCTCTAGTGCCCTCTAGTGTTTTGAAAGTGATGTGTTAAGTTTCGAGTTGACGCCTACAGTACATGTGCAACACGAAGGCGTCATAATGAACGATCGCTCTtaaaacaatgtttatattcatgAGATAAGATCATGTAGAAATGTTAGATATGTTTTTCTTTGGTGGGTGATTATATTTGTCCTATTACACATGCACAAGTGTATCAATAATACACACACGAGTGAAATGGAAAgtcatattttttgttgttgttgaaagttTGTTGTTGCATATGGCCACTCTCTCTGAAACAACTTTCAATAGACCCTTCAGTGAAAATAAGACATTGATTGGAAGTAGGCCTACTTTCTACTTAGTGATTGCATGTTGCTAAAGCTAAGTATAAAGTCGTTTGGTTACATCTGGTCACtaatgtactatatatatattttttttcaggcTTTACCAGTACAGAATGTAAAAAGTGACTTAAGTtatataaaacatttttgaataagtacattttttgttgttgatatttAACAGGCACTTGTCAATGAGTTTTTTGGTGAATAGAAATGTGGGCACTTCATTTGAACACAAACAGACCTGGTCTACAAAACATATAGTGTTTACATTCCCATACTAATGTAGACAATGATTCACAAACCCTTACGTTAGCCTCTGTCCTCAGTGAAGACAAACAGCTTATAATGGCATAACAATGTTGTTTTCATAATTAATATGAACTGTGTGTTTCATAATCATAGACACATCAGAAACCTTAGTGGGGGGAATGAATCATGTCTACCTTATTTTCTTAAAAATGGCCTTTGGTATTGGTGGAAACATTTGCAGAAGGGCAACATGTTGAAAAcaacaaactacagacagaaacCTTGACCTGGTTATGAAGTCATACCCAAAGTGATCATAtgaaatagaaacatacaaacaaaaaaaaaggtaCACACACAATCAACTGTAAGAATGAGTAGATCATTTGAAATGCTTACGCTTAAATAAGATTTCCACAAACAAACAGAATACTCCCtaaatgaagtggaaacagacGGCGTAGTGGTGATTACAACAAATCATTCAACAGTATCCCTCATAACACACGTACAAGTTATCATGATCCTTAAACTAGCATCTGGCTTTATAGATATGAATGTAGAGAGGTGGGCCTGGTCCAGAAACAACCACTCTAGCCCTAGACACTTGTGTAGATGTTAAAAGAACGTTTCCCCTTGGTGATATTTCACCACATGCTTACACCTATCCTGTCTTCTCACTGAGATCAACAAGTTcctagggaggggggggggggctggggggaggggggggctggcCGGGACACTGGTTTTCAATGACTCTCCCTCAGCATAGGGGACAGGTAAGGCAAAAAAAGGTTGAAGAGAATAATGGAGCGAATACTATAAGAAAAAACGATCAGGTGTCTGTGGAGGAAAAAAAGGACAGACATCGCAGTGTGCATTAACATCCCAGACACCCTGTTTAGTGCCACCCCCTCCTCACTAACCAGGAGGGGAGGGCACTCCTGGTGCCACCCCCTTTTCTCATAGGACATTAAATAGTCAGCATCAGCTTCTTAAAACGTCAGTTAGTAGCGACGTTATGCCGTAGTAGCGTTTTGGTTTATCATATCTGTCCACCACTGTAACCTTGTTAATAACAGGAATGACTGACTCCCTCCGTCTCTGTGTCCCAATCGATCCCTAGACCCTACACCCTATGCACTTTCAGAGATCAGAGTAGATTTGATTGGTTTAAACAATATGGTGAAACTTCcacctagcctatcagagggcaaggtGAAGCTACTGCCATATTGCTTGCACCGGTCAaatctcagatctccacaagtccaTAGGGCGtagggtctaggggtccatttgggaTGGTGCCAGAGATCCAGACGGTCTACCACTGCTCCCAGCTGAAGTCGTCTCCCCCGCCGAACACCAGGAAGAAGCCCAGGATGGTCAGGAAGATGACAGCGTTGCCAGCCATCACCAGGCCACAGGCCCCCCACT
>TU2435130
GTTTTAATTAATGTTAGAAAACAGACTGTAGTTTTTTTGTCAGGAGTTTAAATACAGGTCTCTAGTGCCCTCTAGTGTTTTGAAAGTGATGTGTTAAGTTTCGAGTTGACGCCTACAGTACATGTGCAACACGAAGGCGTCATAATGAACGATCGCTCTtaaaacaatgtttatattcatgAGATAAGATCATGTAGAAATGTTAGATATGTTTTTCTTTGGTGGGTGATTATATTTGTCCTATTACACATGCACAAGTGTATCAATAATACACACACGAGTGAAATGGAAAgtcatattttttgttgttgttgaaagttTGTTGTTGCATATGGCCACTCTCTCTGAAACAACTTTCAATAGACCCTTCAGTGAAAATAAGACATTGATTGGAAGTAGGCCTACTTTCTACTTAGTGATTGCATGTTGCTAAAGCTAAGTATAAAGTCGTTTGGTTACATCTGGTCACtaatgtactatatatatatatattttcaggcTTTACCAGTACAGAATGTAAAAAGTGACTTAAGTtatataaaacatttttgaataagtacattttttgttgttgatatttAACAGGCACTTGTCAATGAGTTTTTTGGTGAATAGAAATGTGGGCACTTCATTTGAACACAAACAGACCTGGTCTACAAAACATATAGTGTTTACATTCCCATACTAATGTAGACAATGATTCACAAACCCTTACGTTAGCCTCTGTCCTCAGTGAAGACAAACAGCTTATAATGGCATAACAATGTTGTTTTCATAATTAATATGAACTGTGTGTTTCATAATCATAGACACATCAGAAACCTTAGTGGGGGGAATGAATCATGTCTACCTTATTTTCTTAAAAATGGCCTTTGGTATTGGTGGAAACATTTGCAGAAGGGCAACATGTTGAAAAcaacaaactacagacagaaacCTTGACCTGGTTATGAAGTCATACCCAAAGTGATCATAtgaaatagaaacatacaaacaaaaaaaaaggtaCACACACAATCAACTGTAAGAATGAGTAGATCATTTGAAATGCTTACGCTTAAATAAGATTTCCACAAACAAACAGAATACTCCCtaaatgaagtggaaacagacGGCGTAGTGGTGATTACAACAAATCATTCAACAGTATCCCTCATAACACACGTACAAGTTATCATGATCCTTAAACTAGCATCTGGCTTTATAGATATGAATGTAGAGAGGTGGGCCTGGTCCAGAAACAACCACTCTAGCCCTAGACACTTGTGTAGATGTTAAAAGAACGTTTCCCCTTGGTGATATTTCACCACATGCTTACACCTATCCTGTCTTCTCACTGAGATCAACAAGTTcctagggaggggggggggggctggggggaggggggggctggcCGGGACACTGGTTTTCAATGACTCTCCCTCAGCATAGGGGACAGGTAAGGCAAAAAAAGGTTGAAGAGAATAATGGAGCGAATACTATAAGAAAAAACGATCAGGTGTCTGTGGAGGAAAAAAAGGACAGACATCGCAGTGTGCATTAACATCCCAGACACCCTGTTTAGTGCCACCCCCTCCTCACTAACCAGGAGGGGAGGGCACTCCTGGTGCCACCCCCTTTTCTCATAGGACATTAAATAGTCAGCATCAGCTTCTTAAAACGTCAGTTAGTAGCGACGTTATGCCGTAGTAGCGTTTTGGTTTATCATATCTGTCCACCACTGTAACCTTGTTAATAACAGGAATGACTGACTCCCTCCGTCTCTGTGTCCCAATCGATCCCTAGACCCTACACCCTATGCACTTTCAGAGATCAGAGTAGATTTGATTGGTTTAAACAATATGGTGAAACTTCcacctagcctatcagagggcaaggtGAAGCTACTGCCATATTGCTTGCACCGGTCAaatctcagatctccacaagtccaTAGGGCGtagggtctaggggtccatttgggaTGGTGCCAGAGATCCAGACGGTCTACCACTGCTCCCAGCTGAAGTCGTCTCCCCCGCCGAACACCAGGAAGAAGCCCAGGATGGTCAGGAAGATGACAGCGTTGCCAGCCATCACCAGGCCACAGGCCCCCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040252.1 False 2378 mRNA 0.42 2 33513572 33518504
TU2435127 False 2099 lncRNA 0.40 2 33518199 33520317
TU2435128 False 2099 lncRNA 0.41 2 33518199 33520317
TU2435130 True 2099 lncRNA 0.41 2 33518199 33520317

Neighbor

gene id symbol gene type direction distance location
LOC110509029 LOC106598504 coding upstream 238808 33248650 ~ 33274764 (+)
LOC118944857 LOC106568727 coding upstream 266310 33231522 ~ 33247262 (+)
LOC110508226 LOC106598614 coding upstream 301089 33176752 ~ 33212483 (+)
LOC110509026 LOC106598516 coding upstream 347858 33156641 ~ 33165714 (+)
LOC110509025 LOC106598617 coding upstream 386595 33124472 ~ 33126977 (+)
LOC110509035 LOC106598436 coding downstream 8180 33526684 ~ 33552442 (+)
LOC118944849 NA coding downstream 39778 33558282 ~ 33559552 (+)
LOC110509039 LOC106598420 coding downstream 64594 33583098 ~ 33616039 (+)
LOC110508288 LOC106598607 coding downstream 289516 33808020 ~ 33810797 (+)
cfap57 LOC106598390 coding downstream 293109 33811613 ~ 33850430 (+)
G2129749 NA non-coding upstream 15287 33497589 ~ 33498285 (+)
G2129723 NA non-coding upstream 61732 33451261 ~ 33451840 (+)
G2129710 NA non-coding upstream 80171 33433095 ~ 33433401 (+)
G2129693 NA non-coding upstream 105725 33405500 ~ 33407847 (+)
G2129689 NA non-coding upstream 114671 33398653 ~ 33398901 (+)
G2129742 NA non-coding downstream 35209 33553713 ~ 33554001 (+)
G2129776 NA non-coding downstream 50545 33569049 ~ 33569317 (+)
G2129765 LOC106598425 non-coding downstream 53604 33572108 ~ 33575970 (+)
G2129766 NA non-coding downstream 59596 33578100 ~ 33578503 (+)
G2129779 NA non-coding downstream 60250 33578754 ~ 33578982 (+)
G2129724 LOC106598452 other upstream 60699 33452212 ~ 33452873 (+)
G2129708 NA other upstream 81465 33431751 ~ 33432107 (+)
G2129639 LOC106598496 other upstream 204581 33308098 ~ 33308991 (+)
LOC110509024 LOC106598521 other upstream 444402 33050612 ~ 33070407 (+)
zbtb41 zbtb41 other upstream 709650 32759166 ~ 32803922 (+)
G2129859 NA other downstream 210644 33729148 ~ 33729528 (+)
G2130731 NA other downstream 489127 34007631 ~ 34008262 (+)
G2130749 LOC106598333 other downstream 520288 34038792 ~ 34069094 (+)
LOC110508236 LOC106598267 other downstream 852357 34352592 ~ 34409491 (+)

Expression


Co-expression Network