LOC110509038 (LOC106598425)


Basic Information

Item Value
gene id LOC110509038
gene name LOC106598425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33572110 ~ 33575991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589980.2
TCCTGTGGTGTCTTTTCAAGGGAAGAGGGGACTGAAGCGGCTGGCCAGCTCACTACCAACACCTTGAAGGTCTCAagacagaaaaaaaaacacataatgaAGCTAACGCTAACCTTTCTGTTCGTTCTTGTGGCTTCCTGGCCCCTGGTCCTCTGCGCCAAGGAGGAGCCCATGTCCAAAGATTCTCCTCTACCTCAGGTTCCCGCCGTTGAAACTCGCTCCCGCTTCGCCGCTCTGGATGACGTGCGCCTCCTGGCCAACGGTCTCCTCCAGCTCGGCCACAGCCTCAGGGACTTCGTCCATAAGACCAAGAGCCAGATAAACGACATCTTCCAGAAACTCAACATCTTCGACAGCTCCTTCAACCAGCTCTCCGTGCTGGCCAGCGAGAtcaagggggaagaggaggagctgAAGAAAACCACAGTGGTGCTCAAGGCCAACAACGAAGAGATACGGAATCTGTCGCTGGAGATCAATTCAAAAGTGGAGAGCATCCTGCAGGAGCGTAGCCAGCTTCGGAGCAAGGTGGGAGGGCTGGAGGTGAAGCTGAGCAGCCTGTCTCAGGGCCTGGTCCCCGCCGAGCAGCTGGCTGAGATCAACTCACTGAAGGATGTGATCCACACCCAGGAGAGGAGCATCAGTGAGCTGCTGAAGGCTGTGAGAGAGCAGAGCGACCAGCTCGACCACCAGAGGAGCAAGATGAAAACTCTGGAGGTGAAGCTCACCTACAACCCTTTCATGCAAGAGACCATTGAGAAACCATCTGACAACTTCCAGTCTGCCACACCCACCCTCGCTGGGTATTTGACCAACACCTCCACCAATGGCAGTTTGGACATGACGGATCTCTCATCAGACTGCAGTGAGCTATTCAACAAGGGCGAGAGAGCCAGTGGAGTGTACGCCATCAAGCCTAACCAATCTGAGCCCTTCATGGTCTACTGTGACATGGGTGAAGATGGAGGCGCTACTGTCATCCAAAGAAGGAAGGATGGGTCGATGAATTTCCATCAGAATTGGGAGAAATATGAAAACGGATTTGGAGACTTTCAAGGAGAGTTCTGGCTGGGCCTGAGGAAGATCCACTCCCTCGCTAGTCAAGGTGACACTTTCCTGAACATCCAACTGGAGGACTGGAAAAGGGGCAAGCGCTTCATTGAGTACAACTTCTCTCTGGATGGACCCGAGGCCCACTATAGAATCCACCTCTCACAGGCGTCCGGAAATCTGCCTGACGCAATGAGCAACCACACCGGTATGATGTTCTCCACCAAGGACCAGGACAATGACAAACTTGAAGACTCACACTGTGCCTATACCTACACAGGCGGCTGGTGGTTCAACGCTTGCGGAGACACCAATCTGAACGGGAAATATATCCACGTGAGACCCAAGGGACGGTCAGAGCGTAGGAGGGGAATCCACTGGAAGCCAACCCGAGGGGCCTCCTACTTCCTCCGATCCACCCAGATCTCCATTCGCTCCACCCCTGCCACTACCTTCGCTTCAACCTCCTCAGAGACAGGCAACTTCAGCTCAGAATGAACACCAGACATTTGGCGAAAATATGTGATAAGTCTCTGACAACGAGGCCTTAAGGAGATTTAGGAGGTCAGTTTAGTGAGTCTCTTCTGTCGACTGCACAGTCGGACCAAGTTGATTGAATAGGACTCTGAATCTGTGTCTCTAAACCACAGTTTGCCTTATAGCTAGTCTGAAAAGGATTCACTTCTCCTCTTCGGTATTAAAGGCTTTGGGACACAAGGAACCAAATTAATTGTCTAACATTTTTATACTCAGTTCAGCGTTCTAATTTTAGGGTGAAATTGTTCGACAAATCCTCGTTATTATTACATGCACTTGAGGAATCCTCTGTGTAACTGTAATTCAGACTGTATTAATGGTGGATGGTAGTCATACCTGAGATCTGCACACAAACCTCATAAATATGCAAAACGTACATCATTCTTTCATGTGAACATTTGAGTTGAGCGTGCAGATCTTACTGTAAGTCTGGATACAACCAGGTATGAAGTGATGAGGAGCTGAATGGACAGCACACAGGCATCCACCTGAATAACAGCAGTTATCACCACTTACTGAGTCACATTGACTCTCAGCACATATGTACTGTAAATAgtgtatttttaaaaaataaagcatATTTATGACTA
>XM_021589981.2
GTCCTGTGGTGTCTTTTCAAGGGAAGAGGGGACTGAAGCGGCTGGCCAGCTCACTACCAACACCTTGAAGGTCTCAagacagaaaaaaaaacacataatgaAGCTAACGCTAACCTTTCTGTTCGTTCTTGTGGCTTCCTGGCCCCTGGTCCTCTGCGCCAAGGAGGAGCCCATGTCCAAAGATTCTCCTCTACCTCAGGTTCCCGCCGTTGAAACTCGCTCCCGCTTCGCCGCTCTGGATGACGTGCGCCTCCTGGCCAACGGTCTCCTCCAGCTCGGCCACAGCCTCAGGGACTTCGTCCATAAGACCAAGAGCCAGATAAACGACATCTTCCAGAAACTCAACATCTTCGACAGCTCCTTCAACCAGCTCTCCGTGCTGGCCAGCGAGAtcaagggggaagaggaggagctgAAGAAAACCACAGTGGTGCTCAAGGCCAACAACGAAGAGATACGGAATCTGTCGCTGGAGATCAATTCAAAAGTGGAGAGCATCCTGCAGGAGCGTAGCCAGCTTCGGAGCAAGGTGGGAGGGCTGGAGGTGAAGCTGAGCAGCCTGTCTCAGGGCCTGGTCCCCGCCGAGCAGCTGGCTGAGATCAACTCACTGAAGGATGTGATCCACACCCAGGAGAGGAGCATCAGTGAGCTGCTGAAGGCTGTGAGAGAGCAGAGCGACCAGCTCGACCACCAGAGGAGCAAGATGAAAACTCTGGAGCTCACCTACAACCCTTTCATGCAAGAGACCATTGAGAAACCATCTGACAACTTCCAGTCTGCCACACCCACCCTCGCTGGGTATTTGACCAACACCTCCACCAATGGCAGTTTGGACATGACGGATCTCTCATCAGACTGCAGTGAGCTATTCAACAAGGGCGAGAGAGCCAGTGGAGTGTACGCCATCAAGCCTAACCAATCTGAGCCCTTCATGGTCTACTGTGACATGGGTGAAGATGGAGGCGCTACTGTCATCCAAAGAAGGAAGGATGGGTCGATGAATTTCCATCAGAATTGGGAGAAATATGAAAACGGATTTGGAGACTTTCAAGGAGAGTTCTGGCTGGGCCTGAGGAAGATCCACTCCCTCGCTAGTCAAGGTGACACTTTCCTGAACATCCAACTGGAGGACTGGAAAAGGGGCAAGCGCTTCATTGAGTACAACTTCTCTCTGGATGGACCCGAGGCCCACTATAGAATCCACCTCTCACAGGCGTCCGGAAATCTGCCTGACGCAATGAGCAACCACACCGGTATGATGTTCTCCACCAAGGACCAGGACAATGACAAACTTGAAGACTCACACTGTGCCTATACCTACACAGGCGGCTGGTGGTTCAACGCTTGCGGAGACACCAATCTGAACGGGAAATATATCCACGTGAGACCCAAGGGACGGTCAGAGCGTAGGAGGGGAATCCACTGGAAGCCAACCCGAGGGGCCTCCTACTTCCTCCGATCCACCCAGATCTCCATTCGCTCCACCCCTGCCACTACCTTCGCTTCAACCTCCTCAGAGACAGGCAACTTCAGCTCAGAATGAACACCAGACATTTGGCGAAAATATGTGATAAGTCTCTGACAACGAGGCCTTAAGGAGATTTAGGAGGTCAGTTTAGTGAGTCTCTTCTGTCGACTGCACAGTCGGACCAAGTTGATTGAATAGGACTCTGAATCTGTGTCTCTAAACCACAGTTTGCCTTATAGCTAGTCTGAAAAGGATTCACTTCTCCTCTTCGGTATTAAAGGCTTTGGGACACAAGGAACCAAATTAATTGTCTAACATTTTTATACTCAGTTCAGCGTTCTAATTTTAGGGTGAAATTGTTCGACAAATCCTCGTTATTATTACATGCACTTGAGGAATCCTCTGTGTAACTGTAATTCAGACTGTATTAATGGTGGATGGTAGTCATACCTGAGATCTGCACACAAACCTCATAAATATGCAAAACGTACATCATTCTTTCATGTGAACATTTGAGTTGAGCGTGCAGATCTTACTGTAAGTCTGGATACAACCAGGTATGAAGTGATGAGGAGCTGAATGGACAGCACACAGGCATCCACCTGAATAACAGCAGTTATCACCACTTACTGAGTCACATTGACTCTCAGCACATATGTACTGTAAATAgtgtatttttaaaaaataaagcatATTTATGACTA

Function

NR:

description
angiopoietin-related protein 3-like isoform X2

GO: NA

KEGG:

id description
K22288 ANGPTL3; angiopoietin-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589980.2 False 2177 mRNA 0.50 7 33572110 33575990
XM_021589981.2 True 2172 mRNA 0.50 7 33572110 33575991

Neighbor

gene id symbol gene type direction distance location
LOC110508228 NA coding downstream 3507 33563935 ~ 33568603 (-)
LOC110509037 LOC106598611 coding downstream 9970 33555017 ~ 33562140 (-)
LOC110509036 LOC106598444 coding downstream 45413 33518704 ~ 33526697 (-)
LOC110509034 LOC106598452 coding downstream 57649 33406673 ~ 33514461 (-)
LOC110509030 LOC106598456 coding downstream 190910 33313433 ~ 33381200 (-)
trnav-cac-89 NA coding upstream 6569 33582560 ~ 33582632 (-)
LOC110508229 LOC106598404 coding upstream 50460 33626451 ~ 33797286 (-)
LOC118944832 LOC106598084 coding upstream 338359 33914350 ~ 33916205 (-)
LOC110509043 LOC106598366 coding upstream 377706 33953697 ~ 33972737 (-)
LOC110509045 LOC106598354 coding upstream 401585 33977576 ~ 33990790 (-)
G2130462 NA non-coding downstream 18016 33552883 ~ 33554094 (-)
G2130409 NA non-coding downstream 139057 33432755 ~ 33433053 (-)
G2130404 NA non-coding downstream 145255 33426418 ~ 33426855 (-)
G2130398 NA non-coding downstream 158747 33412968 ~ 33413363 (-)
G2130476 NA non-coding upstream 1801 33577792 ~ 33578201 (-)
G2130484 NA non-coding upstream 17723 33593714 ~ 33594568 (-)
G2130506 NA non-coding upstream 55842 33631833 ~ 33632058 (-)
G2130508 NA non-coding upstream 59572 33635563 ~ 33635926 (-)
G2130514 NA non-coding upstream 73485 33649476 ~ 33649702 (-)
G2130393 NA other downstream 173026 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1341896 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1407088 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1543552 32023057 ~ 32029225 (-)
G2128568 NA other downstream 1688970 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 464215 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 465447 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 465578 34038788 ~ 34058344 (-)
G2131621 NA other upstream 909878 34485869 ~ 34486176 (-)
G2131641 NA other upstream 940531 34516522 ~ 34518129 (-)

Expression


Co-expression Network