LOC110508229 (LOC106598404)


Basic Information

Item Value
gene id LOC110508229
gene name LOC106598404
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33626451 ~ 33797286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966528.1
CTTTGTTATATATTGTTTTCATCTATAGACTCGGATACTGTAATAAGTTATTATATGCGTTGTTGGTCTATGCATCCTCATGCATTCCTGCCTATCCATCACGAGTGAAGAGCAAAAGTTAATTCTTAGTTTTGGGAATTCCCGACAGTGTTTTGACCTTTCTGTAGAACATTGTAAAaagtatagactacagtagactacacacatTCACGTCATCGGCAGTAAAGAATGGGGCGCGTTAATTAAAAAGACAGCTTTATTTTCTTGGCACAATCCCCGCCCATACACGCCGTCGTCACCGATTCAAATTGGCAGTGAGGCTGAGGCAAGGCAAGGGGGGTTTCGGCCGGTAAAGTAGGCTAACACCGTCGCAAGAAGAAGAACGGATTTTCGGACAGGCTTTGTTTGTGTATGAGCTCCATCACCTCCTCCAGAAATGTGGACGGATATAAGGAAACTACTGATCTTTCATTTGTTTGTCCTAAAACACTGCTCAAAAGgaACAGAGGCAGAAGAGTGTGAGGAAGGCCAGTTTCAGTGCAATAACAGAAGGTGTATACCGACCATATGGAGGTGCGATGACGATGACGACTGCTCAGACAACAGCGACGAGGAAAACTGTGCCAGGAAGACGTGTGCCCCAGCAGAGTTTGCCTGTGCTAACGGCCAGTGTGTACCAGGCCGCTGGCGCTGTGACGGGGAACCAGAGTGTCCCGACGGCTCGGATGAGGCAGACGCCACCTGCAGCAAGCAGACGTGTCCTTCGGAGAAGTTTGACTGCGGCGGCTCCACCAACAAGTGTGTCTCGTTGTCGTGGCGATGCGATGGCGAGCGGGACTGCGAGAACGGGTCGGACGAGGAGGACTGTGCCGCCGGAAACAAAGCCTGCCCGAAAAGCCAGTTCCAGTGTGCCAACCGCAAGTGCCTGGCACCTGTCTTCGTGTGTGACGGCGATGACGACTGCGGCGACGACTCTGACGAACTCAAATGCTCCGACCGCCACTCGCCGACGAACACCTGCAGCCCGCACGAGTTCCGCTGCAACACCTCGGAGTGCGTGCCCGTCGTGTGGAGCTGCGACGGCGACCCCGACTGCCCCGACGGCTCTGACGAGTGGCCGGAGCGTTGCGGCGGTGAAGGTTCACATCCACGCCGCAGGGTGAACTGTACGATGGAGGAGTTTCGGTGCAGCAACGGGGAGTGTGTGAGGCTGCCGTGGAAATGTGACGGCGATCCAGACTGCAAGGATAAGTCAGACGAGGCAGAATGTCcccTACTGACATGCAGGCCAGATGAGTTCCAGTGTGGGGATGGCTCCTGTATCCACGGCACCAAGCAGTGTAACAAGGtccatgactgtcctgatcagagTGATGAGGCCGGCTGTGTCAACGCCACTAAGTGCGAGGGACCCTTGAAGTTCCTGTGTAAGAACGGAGAGTGTATCGACAGCGCCAAGGTGTGTGACAACGTCAAGGACTGCAAGGACCGCTCTGATGAGCCCAAGAAGGAGTGTGgGCTCAACGAGTGCTCACTCAACAACGGCGGCTGTTCTCATATCTGCCAGGATCGACCAATAGGCTACGAGTGCCAGTGTCCCACCGGGTACAAGCTACTGGACAAGAGGACGTGTGGAGaCATTGATGAGTGTGAGAACCCCAACGCCTGCAGCCAGATCTGCATCAACTACAAGGGAGACTTCAAGTGTGAATGTTACCAAGGCTATGAGATGGACCCCGTCACCAAGACCTGTAAAGCAGAagGGAAGTCTCCTTACCTGCTGTTCACCAACCGTCAGGAGATCCGTCGTGTAGACCCGGTGAAGAGGGACTACCGCCAGGTGCTTGCCACCCAGAAGAATGCTGTGGCGCTGGACGTAGACGTGGCTAATAACCGTCTGTTCTGGTGCGACCGCTTCCACCGTAACATCTACAGTGCTCTGATCCCAGAGGCGGGCGACCCGTCCCAGCAGGTGACCCTGGTGGActctggctctctcctctcccctgagggCCTGGCCCTGGACTGGGTCCAACACAACCTCTACTGGACCGACTCGGGCCACAAGACCGTCTCGGTGGCCTCGGCCTACGACGGCCTCAAGAGGAGGGTCCTGGTCGACACGGAGCTCAGCGAGCCCAGAGCCATAGCGCTGGATCCACAGCATGGGTTCATGTACTGGACTGACTGGGGCACCCGGGCCAAGATAGAGAAGGCAGGGATGAACGGGGTGGACCGACAAGTCCTGGTGTCAGACAACATTGAGTGGCCCAACGGCATCACCCTGGacgtAGCCAACAGGCGTCTTTACTGGGTCGACTCCAAGCTGCACCTGATCTCCAGTGTGGACTTGAACGGGGCTCATCGCAGGACACACCTGTCCTCCTCAGAGAGACTGGGACACCCCTACGCACTGGCCGTgttcgagGACCGTATCTACTGGACAGACCGGGAGAGAGAGGCGGTGTACAGCGCTAACAGGCTAACGGGCCAGGACATCAGCACAGTGGCCGAGCACCTCAAAGACCCTCACGACATAGTGGTCTTCCACCCGCTCCGCCAGCAACCAGGCCCAGACAGCTGTAACCTGGGCAGTGAGGACAACGGTGGCTGTGAGTACCTGTGTCTCAAAGCCCCCCAGATCACAGAGCACTCCCCCAAATACACCTGCGCCTGCCCCACAGGACAGGACCTGGGCCCCGAAATGCGTGCCTGCATGCCAGCAAATGAGACCACTACCACATCATCGCCTGTGGCCATCACCACGGCCGCCAACGACAAGGTCTCCCCTCGCACTTCTGGGTCGTCCCAGGCAGACGCCGGGGTGCCCCACCTCCTCCCAGCCCCCTCCAGCACCCCCGAGCCCCCCCCTAGCTCAAAACCTGGGGTGGAGGAGAAGGAAGGCCGTGGTTTGGATCCCACTGCTGACACCAACATCCTGGTCACCTCCACCACAGTAGGCTTCGTCGTCAAGgaggacagcaacctctcccaccactCTGGAAGTGAGCATTTCCTCCTGGGTGAGAACCTGACAGTGGCAGTTCTGGGAGTAGTGATCCCCATAGTTCCTATTGTTGCCACAGTGATCTTCGGCCTGCTCTGCACCGGCGTCTACCTGGTTTGGCGGAACTATCGCCAGAACGCCACCAAGAGCATGAATTTCGACAACCCTGTCTACCGCAAGACCACGGGCGAGGGCGAGGAGGACGAGATTCACATCGGCCGGACGGATGGCATCATGGGCGGCCACCACGGGCACCACCCGTACCCGGCCGGAGTGGGGTGTGGCGTAGTCGGCGGGGGCGGAAATACATGCCCACAGTTCATTGCGCTGCCACTAGGTGGCAGTATGCCTGATCCGGGGACTCATTGGTACACGGAGCAGCCTATGCTGTCTACTACGGCGAAATGAGTATGGATACAAGACAAGATGGCCGCTCAGGAGGTTAATTTTCAAGATGGCCGCCGctcaggcacacgcacacacagtactGAGGTTACAGGTCACTCAAGCTGACTGACTTGTTGAATGGATGGACATATGATGTTATGATATCATCACATCCAGCCATTAAAGTCCATGATGTGCCAGTTCATTACACAGGATCGACAGTTTTACACTTTCTACGTTTTTAAATGTGATGTCAGAGTTTGGGTGGGTTCCAATTGAATTCCTATCAATTTAGAAAATTGATAAGAATTCAGTTCATGAATTCTCTACGTATCAATTGAATTTAGATACATTTCCTCACTGGACTTGAAAAGGAGTCAACTCCAATTCTGTATGTTTTTCATCCACTTTTGATCAATCTAAGCAGTATTGAGCTGTGTTATATGTCTCACGTTTAAGGGCGAGAGGAGTTACAAAATATTATTTTAATCCTTGACGTTTTAAATTTAGGCTCTCCATTTTATTTCCCTGGTGGAACCTCAATTTTCTGGAGAGACTTTTTAGGAGGAGGTTTAAACCACGGCAGCACCTTAGTAGATGGGACAATCTGTACGGTTTTAAGATATTCATTTAACATGTTTTATTGCTCACCTCATTATTACTAAAGATGTCATAGTGTTTAGTTATTCTGGTCGGGGCATTTGTCTTGGAGTGGAGTGAAAGGtttaagagagagtgtgtgggcttgtgtgtgagtgtgagtttgCTTGTGTggatttacgtgtgtgtgtgtaaacctgtGTGTGTACTTTCTCTCGCCATTGGAGAGGAGTTTTCAAAGCATCCTTGTTGATATCCTGTGAAGTACAGTTGAGCCGTGGCAGAAACCTCTTTGATGTTTTCTTTATTGAACCACAAAGGCTATCAGAAGGCAAGCAGGGAATAGGAGGGTCAAGGAGAGATTTTGGTGGAATCCAAGAAAAAACTGAAGGCTTAGCGAGAGAAGCCTTTGTAGTTATTAAGGTTGGCCTGGATTTATAGACCCAGTGAAAATACGTCTAATTACAAGCTAATGGCCAAGGGTATCTGTGTTGGGCAGGATAATGACAACAGAGTTGGCTGAAGCAGAAATAGCCAGCTTTCTGGCTAGCATGCTGATTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCGGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTATAGCAAAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCATGCTGTTTATCAAGGCTATAGCAGAAATAACTAGCTTCCTGGCTAGCATGCTGTTTATCAAGGCTAAAGCAGAAATAACTAGCTTTCTGGCTAGCAGGCTGTTTATGAAGGCTAAAGCAGAAATAGCTAGCTTTCTGGCTAACAGGCTGTTTATCAAGGTTAAAGCAGAAATAGCTAGCTTTCTGGGTAGCAGGCTGTTTATAAAGGCTAAAGCAGAAATAGCTAGCTTTCTGGCTAACAGGCTGTTTATCAAGGTTAAAGCCGAAATAGCTAGCTTTCTGGGTAACAGGCTAATGTGTATCTAGGCTAAACCAGAAATGGCTATTGGCTACCAGGCTAATTGTTAGCTATTATTCTTCTCTCCTTTTTAGCTGTTTTCCATGGCCATAGGGTATGTGGTTGGTACATGTGTCATCTGTTTTTGGTGATTTTATTCTCCCATCTGCTCTCTTTGTCAGTaaactcatacacacacagtcactcacccTCGATAGATCACACAAAGGCATGCATATTCACTCACCCTTCACAAGCACTCCACAATGCCCCTGTCCTCGTTCTTTGAGCAGATGTCATTGTGAGCTTTCATACAGGAGGGCAATAGTAGGAGGTCTCTCATACAGGAGGAACTCAGTAGGAGGTCTATCATACAGGAGGAACTCAGTAGGAGGTCTACCTATCATACAGGAGGATCTCAGTAGAAGGTCTAACATACTGGAGGATCTCAGTAAaaagtcaaaagtagtgtataggcactatatagggaatagggtgacagtTGGTTTGCAGTTCTCAACAGTAATGAGGTTCGGTCAGGTTGGATCCTCCGGTCAGTATACACGGCCCTCCTTTGTCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCATTTGTCCCCCTCTCTTTTATCCCCCTCTCTTTTATCCCCCTC

Function

NR:

description
PREDICTED: low-density lipoprotein receptor-related protein 8-like isoform X2

GO: NA

KEGG:

id description
K20052 LRP8, APOER2; low-density lipoprotein receptor-related protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966528.1 True 5704 mRNA 0.51 18 33626451 33797286

Neighbor

gene id symbol gene type direction distance location
trnav-cac-89 NA coding downstream 43819 33582560 ~ 33582632 (-)
LOC110509038 LOC106598425 coding downstream 50460 33572110 ~ 33575991 (-)
LOC110508228 NA coding downstream 57848 33563935 ~ 33568603 (-)
LOC110509037 LOC106598611 coding downstream 64311 33555017 ~ 33562140 (-)
LOC110509036 LOC106598444 coding downstream 99754 33518704 ~ 33526697 (-)
LOC118944832 LOC106598084 coding upstream 117064 33914350 ~ 33916205 (-)
LOC110509043 LOC106598366 coding upstream 156411 33953697 ~ 33972737 (-)
LOC110509045 LOC106598354 coding upstream 180290 33977576 ~ 33990790 (-)
LOC110509046 LOC106598598 coding upstream 199805 33997091 ~ 34000856 (-)
LOC110509052 LOC106598333 coding upstream 241502 34038788 ~ 34058344 (-)
G2130484 NA non-coding downstream 31883 33593714 ~ 33594568 (-)
G2130476 NA non-coding downstream 48250 33577792 ~ 33578201 (-)
G2130462 NA non-coding downstream 72357 33552883 ~ 33554094 (-)
LOC110509034 LOC106598452 non-coding downstream 175908 33406673 ~ 33514461 (-)
G2130409 NA non-coding downstream 193398 33432755 ~ 33433053 (-)
G2130642 NA non-coding upstream 52572 33849858 ~ 33850287 (-)
G2130787 NA non-coding upstream 76906 33874192 ~ 33874500 (-)
G2130789 NA non-coding upstream 78473 33875759 ~ 33876007 (-)
G2130805 NA non-coding upstream 108788 33906074 ~ 33906720 (-)
G2130806 NA non-coding upstream 109954 33907240 ~ 33907582 (-)
G2130393 NA other downstream 227367 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1396237 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1461429 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1597893 32023057 ~ 32029225 (-)
G2128568 NA other downstream 1743311 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 242920 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 244152 34041438 ~ 34068073 (-)
G2131621 NA other upstream 688583 34485869 ~ 34486176 (-)
G2131641 NA other upstream 719236 34516522 ~ 34518129 (-)

Expression


Co-expression Network