LOC110509045 (LOC106598354)


Basic Information

Item Value
gene id LOC110509045
gene name LOC106598354
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33977576 ~ 33990790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966941.1
TGAGCGCTATACCTCAAAGACTAGTGTCCCCTCTTCTGACTGGTAGTTCAGTGATAATAGTAGGGATAGGCTTGAATGTACAGTAGTCTGTTGTTTTCGTAGCGTTGGTTTGGTCACTAACCGGAGAGGCAGTTTCCTAGAGGTCATAGGTCAGGCCATGACCCCGAGGGAGCAGCTGAGAAAGATGTCAGCGATGGGGGAGCAGGGGGCTCTGGATGAGAAACACTGGTACCGCCTGGTCAATGGCATGTCTGCTGGAGAGCTACGTCAGCGGCAGGAGATGATGATGAGAAACCAGATGACCATGACTCCTCAGATCCTGGCCCAGGGACAGCAGAGGCTACAGGGGGTGCCCACCCAGTTTGAGCCCCGCTTCATGGAAAGAGAGCTAGCTCCTCCCTCTGAGATGGTATCTTCTGAGGTCAGGCAGATGCACATGGGGGGTCACCTCGGTCCGCCCATGCCCCCACACCCTGGTATACCTGGCAGGGGCTTCCCTGGAGCTGGCTATAGCTTCATGCCCTCAGAGCCCATGGAGACAGTTGCCCGGCGACAGGAGCTCATCCACAAGCAGAACATCGCCAGGATGGAGATGAATGCCATCCTCCATCAGAAGGAGATGGAGAACGCGCATCAGAAGGGTCTGATGGGTATGGAGGCGCCCATGATGTACCAGTCCAATGCCATGGCGTTCCGAGGGCGCCAACGCCTCCCAGACGGCCACGACGTCTTCGTCCACCGCACCACCCTGGAGGAAATGCAGGCCAACAGCCTCCTGATGTCCTCCAGCCCCTATCCACCAATCAGCACGCTGCAGAGGGAGAGGAGCCGCAGGGTCGGTCGCAGGGCAACTAATCACAAGAGCACAGAGAGCCACGCGTCGGGCCCGAAGGGCCAATCGGAAGACAAGAGCGTGGAGCAGAGTCCCGGCGGTGCctcgggagaggagaaagaggcgGAGGGGAAAATGGACATGGGAGGGGAGGCGGCCAGCAAACAACATCAAACCAAAATGGACGCACAGCTCTCGGCGGGCAGCAGGAAGAGCTacaaggaggaggagcagggccTGCGCAAGGCCTGCATAAACAGTCAAGATGGCTGCCCTGACGTTACCAACTGCAACAGTGGCGCCAGCGACAAAGACATGCCTGGCCAATGCTCTGCGTTCCAGTATCCCTCCGCCAGTGGGCCTATCCCAGGCATGCCTTACATGTTCCCTCATGGGCACCCCAATCTCTTTCTCAACGGAGAAGATATGTCCTCTATCCAAGACCTCAGGAAGTGGACAGTGGACGACGTGTACAACTTCATCAACAACATACCCAGCTGCTCTGAATATGCTCAGACTTTCAAGGACCACGTGATAGATGGGGAAACGTTGCCGCTCCTGACAGAAGACCATCTACTGGACACCATGGGACTGAAGCTGGGCCCTGCACTCAAGATACGATCACAGGTGTCTCGACGGCTAGGCAGCATGTTTTATATGATGAACCTCCCGCTCGCCGCCGCCGCCGCTCTGCAGGCCGCCCCTGAGAAGGCAGGAGGAGGCCGATCGTCAGAGATCAGCTCCCCTGTTAACTGTAACAGTGTGGAGATGATGGGCAGCCCGTGCACCAGAGACCCAGAGGGCCTGAAACCAACCGACTCCCTCCCAGAGATTGACAACCCCTCTCCCCCTTCGGCCAGCAGTGGAACTGCCTGAGGCATCAGTGTGTGGGAGAAGAGTCGTCAGCCAGTGGTTCAGATCCAAGTCGACCACTAGCCCCTACCACATACATATAGACACATACCCTCTAAGGACTTCATGTAGATTTTTAAGCATTGGATGGGTATAAGTGATATAGTAACAGCTGCATCTTGCCCTCTGATTGGCTAGATGGAATTGTTGCTGTGTTGGATACACCTGTCCAACTTTCAGAAGTGCACAGGGAGTAGGAAATAGGGTTCAAATAGGAATTCAGCAAGTGTTTCAGCCCAAAGAGCTGCTTGTAAGCTGCTAACCATTTCCGTCAGGCAATGGTGTTCAGTTTTCTAGTGTGTGCCCTGCAGTGTTTAAACTGCTAGGTGTATGATGGCATTTTTGTATGTATTTAGTTACAGTTGAAATGTTTGGTACTTTTTTTCCACCATGTTTCAGATTCAAGATGGAGGCATTAAACCCCAAGCCATTAGAAATATAGATGGCTTGATGAAGAATGGGAAGAACACTGAATATACACGTGACCTCTGTGTTTGGGGGGAAAATAAACTGTATTATGTAAATATTAATGCATTTATTGTGTTTTTGTAGCATAATGCTTTCCAATGAATATGTGTGATATTATCAGTTTTAATGAATATAAATGATTGATTTTAACG
>XM_021589991.2
GCCAGGCTAATAGAGTTGAGGCAAAGCGgtatttaaagttttttttttgttggttaaggCCGTTAGTTAGCCGTTAGCTGCTGACACAGGACAGGGGTGTGGCTGATTGGCTGGTCACCACTTATCAGAGGTGTCAAGCTAGGCTGCTATACCAAGGCCCTGAGGAATCCATCAGCATCATATTCTGTGAACTCCTGACCTGAAGATACAGTGTAGCTTTAAGGTTTTTTATTTCGTTTAACTTCTCGTTCTGTCTACTCTGTTGGGACAAGTCAGTCACAAGCTGTTCTCATTGGCAGGAACTTGAAGAGAGGCAGTTTCCTAGAGGTCATAGGTCAGGCCATGACCCCGAGGGAGCAGCTGAGAAAGATGTCAGCGATGGGGGAGCAGGGGGCTCTGGATGAGAAACACTGGTACCGCCTGGTCAATGGCATGTCTGCTGGAGAGCTACGTCAGCGGCAGGAGATGATGATGAGAAACCAGATGACCATGACTCCTCAGATCCTGGCCCAGGGACAGCAGAGGCTACAGGGGGTGCCCACCCAGTTTGAGCCCCGCTTCATGGAAAGAGAGCTAGCTCCTCCCTCTGAGATGGTATCTTCTGAGGTCAGGCAGATGCACATGGGGGGTCACCTCGGTCCGCCCATGCCCCCACACCCTGGTATACCTGGCAGGGGCTTCCCTGGAGCTGGCTATAGCTTCATGCCCTCAGAGCCCATGGAGACAGTTGCCCGGCGACAGGAGCTCATCCACAAGCAGAACATCGCCAGGATGGAGATGAATGCCATCCTCCATCAGAAGGAGATGGAGAACGCGCATCAGAAGGGTCTGATGGGTATGGAGGCGCCCATGATGTACCAGTCCAATGCCATGGCGTTCCGAGGGCGCCAACGCCTCCCAGACGGCCACGACGTCTTCGTCCACCGCACCACCCTGGAGGAAATGCAGGCCAACAGCCTCCTGATGTCCTCCAGCCCCTATCCACCAATCAGCACGCTGCAGAGGGAGAGGAGCCGCAGGGTCGGTCGCAGGGCAACTAATCACAAGAGCACAGAGAGCCACGCGTCGGGCCCGAAGGGCCAATCGGAAGACAAGAGCGTGGAGCAGAGTCCCGGCGGTGCctcgggagaggagaaagaggcgGAGGGGAAAATGGACATGGGAGGGGAGGCGGCCAGCAAACAACATCAAACCAAAATGGACGCACAGCTCTCGGCGGGCAGCAGGAAGAGCTacaaggaggaggagcagggccTGCGCAAGGCCTGCATAAACAGTCAAGATGGCTGCCCTGACGTTACCAACTGCAACAGTGGCGCCAGCGACAAAGACATGCCTGGCCAATGCTCTGCGTTCCAGTATCCCTCCGCCAGTGGGCCTATCCCAGGCATGCCTTACATGTTCCCTCATGGGCACCCCAATCTCTTTCTCAACGGAGAAGATATGTCCTCTATCCAAGACCTCAGGAAGTGGACAGTGGACGACGTGTACAACTTCATCAACAACATACCCAGCTGCTCTGAATATGCTCAGACTTTCAAGGACCACGTGATAGATGGGGAAACGTTGCCGCTCCTGACAGAAGACCATCTACTGGACACCATGGGACTGAAGCTGGGCCCTGCACTCAAGATACGATCACAGGTGTCTCGACGGCTAGGCAGCATGTTTTATATGATGAACCTCCCGCTCGCCGCCGCCGCCGCTCTGCAGGCCGCCCCTGAGAAGGCAGGAGGAGGCCGATCGTCAGAGATCAGCTCCCCTGTTAACTGTAACAGTGTGGAGATGATGGGCAGCCCGTGCACCAGAGACCCAGAGGGCCTGAAACCAACCGACTCCCTCCCAGAGATTGACAACCCCTCTCCCCCTTCGGCCAGCAGTGGAACTGCCTGAGGCATCAGTGTGTGGGAGAAGAGTCGTCAGCCAGTGGTTCAGATCCAAGTCGACCACTAGCCCCTACCACATACATATAGACACATACCCTCTAAGGACTTCATGTAGATTTTTAAGCATTGGATGGGTATAAGTGATATAGTAACAGCTGCATCTTGCCCTCTGATTGGCTAGATGGAATTGTTGCTGTGTTGGATACACCTGTCCAACTTTCAGAAGTGCACAGGGAGTAGGAAATAGGGTTCAAATAGGAATTCAGCAAGTGTTTCAGCCCAAAGAGCTGCTTGTAAGCTGCTAACCATTTCCGTCAGGCAATGGTGTTCAGTTTTCTAGTGTGTGCCCTGCAGTGTTTAAACTGCTAGGTGTATGATGGCATTTTTGTATGTATTTAGTTACAGTTGAAATGTTTGGTACTTTTTTTCCACCATGTTTCAGATTCAAGATGGAGGCATTAAACCCCAAGCCATTAGAAATATAGATGGCTTGATGAAGAATGGGAAGAACACTGAATATACACGTGACCTCTGTGTTTGGGGGGAAAATAAACTGTATTATGTAAATATTAATGCATTTATTGTGTTTTTGTAGCATAATGCTTTCCAATGAATATGTGTGATATTATCAGTTTTAATGAATATAAATGATTGATTTTAACG

Function

NR:

description
sterile alpha motif domain-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966941.1 False 2364 mRNA 0.53 7 33977576 33985115
XM_021589991.2 True 2549 mRNA 0.52 7 33977576 33990790

Neighbor

gene id symbol gene type direction distance location
LOC110509043 LOC106598366 coding downstream 4839 33953697 ~ 33972737 (-)
LOC118944832 LOC106598084 coding downstream 61371 33914350 ~ 33916205 (-)
LOC110508229 LOC106598404 coding downstream 180290 33626451 ~ 33797286 (-)
trnav-cac-89 NA coding downstream 394944 33582560 ~ 33582632 (-)
LOC110509038 LOC106598425 coding downstream 401585 33572110 ~ 33575991 (-)
LOC110509046 LOC106598598 coding upstream 6301 33997091 ~ 34000856 (-)
LOC110509052 LOC106598333 coding upstream 47998 34038788 ~ 34058344 (-)
LOC110509051 LOC106598333 coding upstream 74749 34065539 ~ 34075144 (-)
LOC118944872 NA coding upstream 257155 34247945 ~ 34250438 (-)
zgc:110366 LOC105007548 coding upstream 267405 34258195 ~ 34269017 (-)
G2130806 NA non-coding downstream 69994 33907240 ~ 33907582 (-)
G2130805 NA non-coding downstream 70856 33906074 ~ 33906720 (-)
G2130789 NA non-coding downstream 101569 33875759 ~ 33876007 (-)
G2130787 NA non-coding downstream 103076 33874192 ~ 33874500 (-)
G2130642 NA non-coding downstream 127289 33849858 ~ 33850287 (-)
G2130847 NA non-coding upstream 15816 34006606 ~ 34006952 (-)
G2130852 NA non-coding upstream 24034 34014824 ~ 34015681 (-)
G2130854 NA non-coding upstream 25508 34016298 ~ 34016990 (-)
G2130855 NA non-coding upstream 28405 34019195 ~ 34019432 (-)
G2130856 NA non-coding upstream 29259 34020049 ~ 34020266 (-)
G2130393 NA other downstream 578492 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1747362 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1812554 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1949018 32023057 ~ 32029225 (-)
G2128568 NA other downstream 2094436 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 49416 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 50648 34041438 ~ 34068073 (-)
G2131621 NA other upstream 495079 34485869 ~ 34486176 (-)
G2131641 NA other upstream 525732 34516522 ~ 34518129 (-)

Expression


Co-expression Network