LOC110509046 (LOC106598598)


Basic Information

Item Value
gene id LOC110509046
gene name LOC106598598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 33997091 ~ 34000856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040258.1
GTGCTGCCATTGAAGGTGATGGTCAGTCAGAGTAGCAGCTGGTAAGCTGTAAGGCTGCTTGGTTTGTTTCGGTGGTCATGAGACCTttcgtttgtttttgtctttaGTTTGGGGCCTTTTTGTATTTTTCCTTTTTGTACATATTCATGTTTCGTCATCAtctaaacaaatgatagtctacTTGGATGACCAAGAGGAAAGACTGAGCTGGCCCTGGACCAAGACTCTCCCCCCGGCAACTACTGGGTTCTGTCCACTGACTACGAGGGCCACTCCGTGGTCTACGGCTGCACCGACATCCTGGGCACCTTCCATGCTGACTTTGCCTGGATCCTGAGCAGAGAGTCCACCCTGTCTGAGGAGAAACTGGAGGAGCTGTACCACGTGTTCACCTCCAATGGCATCGACATCGACGTGATGACCGTCACCAACCAGAGCCCAGAGCTGTGCGCCGACATGCCTCTGTGGGCCTAAGAGACCTGATTTCAGTCTACAACATACGTATGGTTTGCATTCATAGCATGGCTTGCACATAGACTGCTGTACAATGTCCAATGGTTGATACCTGCATGGTTGTCTTGTGTTTGGTCTGTTTATGTTAACTTGTGAGGAAATGCAATAAAATGATACTAGAAACATT
>XM_021589993.2
atgctgccaccaccatgcttcactgtagtgatggtgccaggtttcctccagacgtaacgcttGGCATAAGAAGTCAAGTTACACTTCTACCTGTGTAGAAAAACACTGTGTATTAACATGTTGTTACTTAGTACTTTGGTAGAGCATGATTCCCGCCAGGGTCACCAACACGGAAAATGGATGCAACTGTAAGTCTGTTTGAATGCATCTTGCATCTGCAAAATGGTGTGTTATTTCACTTGTGTAACAACCGAAACCACTAACATGTCAGTCACTAGCAGAGTCAGACAGGAGTTTGTTTCCTCAAGGTCCATTTGAACAGGTGCCATACTCCCAACGCTAATACAaacactagcacacacactctcaatTCTGGAATTCTGAGAACAACCCCCGTCATGAAAGCGATGCGTCAGCCGCATAACTAACGAGTTTGACATATAAATAGGCGTCTATAACCCACTGAACATCACTGAAACAGGTTGATCTTCTGAACAAGTGCAGGACCCAAGATGCAGACTCTACAGgtactctctctgactctgctgTCTATTCTGGCCGCTAACGCCCAAACTTTACGCCCTGGAAAATGCCCCCAACCTCCCGTCCAAGCTAATTTCGACGCCGCCAGGTATCTGGGCAAGTGGTACGAGATCAAGAAGCTCCCTGCCGTCTTCCAGAAGGGCGAGTGTACCACAGCTACCTACTCTCTGGAGAGCCCCGGAGTCGTTGGTGTGCTCAACAGGGAGCTGCTtGCTGATAACACTGTCAGTGTTATTACTGGCTATGCTAAGGCCAAGGACCCCTCTGAGCCCGCCAAGCTGGAAGTCACCTTCTTCGAGGACTCTCCCCCCGGCAACTACTGGGTTCTGTCCACTGACTACGAGGGCCACTCCGTGGTCTACGGCTGCACCGACATCCTGGGCACCTTCCATGCTGACTTTGCCTGGATCCTGAGCAGAGAGTCCACCCTGTCTGAGGAGAAACTGGAGGAGCTGTACCACGTGTTCACCTCCAATGGCATCGACATCGACGTGATGACCGTCACCAACCAGAGCCCAGAGCTGTGCGCCGACATGCCTCTGTGGGCCTAAGAGACCTGATTTCAGTCTACAACATACGTATGGTTTGCATTCATAGCATGGCTTGCACATAGACTGCTGTACAATGTCCAATGGTTGATACCTGCATGGTTGTCTTGTGTTTGGTCTGTTTATGTTAACTTGTGAGGAAATGCAATAAAATGATACTAGAAACATT

Function

NR:

description
apolipoprotein D-like isoform X1

GO: NA

KEGG:

id description
K03098 APOD; apolipoprotein D and lipocalin family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040258.1 False 640 mRNA 0.48 2 33997091 33998016
XM_021589993.2 True 1260 mRNA 0.49 5 33997091 34000856

Neighbor

gene id symbol gene type direction distance location
LOC110509045 LOC106598354 coding downstream 6301 33977576 ~ 33990790 (-)
LOC110509043 LOC106598366 coding downstream 24354 33953697 ~ 33972737 (-)
LOC118944832 LOC106598084 coding downstream 80886 33914350 ~ 33916205 (-)
LOC110508229 LOC106598404 coding downstream 199805 33626451 ~ 33797286 (-)
trnav-cac-89 NA coding downstream 414459 33582560 ~ 33582632 (-)
LOC110509052 LOC106598333 coding upstream 37932 34038788 ~ 34058344 (-)
LOC110509051 LOC106598333 coding upstream 64683 34065539 ~ 34075144 (-)
LOC118944872 NA coding upstream 247089 34247945 ~ 34250438 (-)
zgc:110366 LOC105007548 coding upstream 257339 34258195 ~ 34269017 (-)
vcam1a LOC106598299 coding upstream 283412 34284268 ~ 34300628 (-)
G2130806 NA non-coding downstream 89509 33907240 ~ 33907582 (-)
G2130805 NA non-coding downstream 90371 33906074 ~ 33906720 (-)
G2130789 NA non-coding downstream 121084 33875759 ~ 33876007 (-)
G2130787 NA non-coding downstream 122591 33874192 ~ 33874500 (-)
G2130642 NA non-coding downstream 146804 33849858 ~ 33850287 (-)
G2130847 NA non-coding upstream 5750 34006606 ~ 34006952 (-)
G2130852 NA non-coding upstream 13968 34014824 ~ 34015681 (-)
G2130854 NA non-coding upstream 15442 34016298 ~ 34016990 (-)
G2130855 NA non-coding upstream 18339 34019195 ~ 34019432 (-)
G2130856 NA non-coding upstream 19193 34020049 ~ 34020266 (-)
G2130393 NA other downstream 598007 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1766877 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1832069 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 1968533 32023057 ~ 32029225 (-)
G2128568 NA other downstream 2113951 31882715 ~ 31883140 (-)
G2130771 LOC106598333 other upstream 39350 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 40582 34041438 ~ 34068073 (-)
G2131621 NA other upstream 485013 34485869 ~ 34486176 (-)
G2131641 NA other upstream 515666 34516522 ~ 34518129 (-)

Expression


Co-expression Network