LOC110509049 (LOC106598340)


Basic Information

Item Value
gene id LOC110509049
gene name LOC106598340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34029842 ~ 34035930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966899.1
TCCCATACAAGGGAGCAGAAAGGTAGCAGAAAGGCTCGGTGAGAGCTatacccccgccccccccccaaaCCAATCAACTCAGAGAGCCACTGGCTCCTTCAGGATCTCCGGAGGGCAGAGCTTCACTTGAACAACAGGAGACAGACAAAGCTGAAAATGGCACGGGCAGGAAGACCGTTTTCCCTGATCTACACTGGAATTCTCCTCGTGTTATCACCAGAGTTTCTGGGGGCCGGCCCGGTGAGGcagaatgtggaggaggaggCATCTTCAGTATCCAGGGATGTCCGCAGCAAGAGGAGTCTTCCTGTTCACATGCCCGTCCTCCAGCGGCTCCCTGACTTCTGGGGATGGTACAGATTCTTCATGGATACTGGCAACCAGGAAGGAATCGAGGATCTGGACAAGATGTACATGATCTACCTGCAGAACAAGCACCGCTCCGAGGAGGGTCCCACCTTCAACCACTACCTCACCCACCTCAGTGCTATCTACAAGACCTGCGCCGAATCCGACGACCCAGAGTGCATCGCCGAGTCCACCAGCAAGCCCAAGGCCAAGGTGTTGATGCCCTCGCCCATCAAGACCGCCACAGTCGGAATGTGCAACCCTTATATCGACCCCTACTGCCTCTTCCCCATGGCCCCTAAGATGGCTGCCCCAAAGCCTCCTCTGACTCCAGCCCCGGCTCCGGTCAAAGCTGCCCCAGTGCCTGTCCTGAACCCCTTCCTGCCGTACCCTCTGAAGACCCCCACAGGGTTCTACGCCCCAGTCCTGGAGCCCTTCCTCACCGCTGAGCAGAAGACAGAGCTGCTGCGTATCTGTAACCCTGACGACACAGAATGTCTGCAGTACCACCTGCGCGCCGCCTACGGCTACAGGCCCGCTACTGGACCCGCCCCGTCCTATGCTGCCCTGGGCTGCAATCCCACCAAGGACCCCTACTGCCGGCCTCAGCTGGTGGAGAAGGGCCCCTCCGGCTTCTTCCACCTGTACCCCACCTGCGACCCGGCCACCGACCCCCTGTGCATGGCTAGCGTAGCGACCCCTCCTCCCACTTCCCTGGAGACCCCCAAGGAGCAGCACTGCAACCCCCTCTTCGACAAGGGCTGCAACCCCCTCACCGCCACCAAGCTGGCGGGCCTCACCAAGCCCGTCCTGGAGTACACGCCAAAAGACGTACCGGCACCAGCCCCCGCCCCTTTGGCGTGTGACCCGCGCTACGACCCATACTGCCTGCTTGGTGCTGCCGCCGCCCTCTATAAGGCCCCCCCAGCACTGCCTCAGTTCCAGATCCGCTCCCGCCTGGGCGTCCTCGGGAAGACCAAGGAGGGCCATGACTGCTACGTGCACTACGACAAGGACTGCACTCCTGTGAAGGCCAGCAACGAACCCAAGGCCCCCGCCGTACCCCAGTGCCACCCCTACGATTTCACCTGCAACGGCATGTCCGCCCCCGTTACCCTCACCTCTGAGGCCAACAAGGCCAAGAGCGGTGTGATCTTGCCCGATCCCGACTGCGACCCTGAATACGACTACAACTGCCGCCTTCGTCGCGCCGAGGACTCCCCCGCTGCGATGGAATCCAAGACCAAGGAGCCCAAGGAGGAGCAGGTGCAGCAGAAGGCAGGGCCCGGGTACGCTGTCCCACAGTTCGAAGACTTCCTGAGGAGTTACATGGCCATGGGTCAGTACAGGAagaagtacatttaaaaaaacacacgTCACACAAATGTCAACTAGACGCTAGAACGCTAGAACTGGAAGAAAGTGAGACAAGTTcatgttttacacacacacacacacacactcactcactc
>XM_036966900.1
TCCCATACAAGGGAGCAGAAAGGTAGCAGAAAGGCTCGGTGAGAGCTatacccccgccccccccccaaaCCAATCAACTCAGAGAGCCACTGGCTCCTTCAGGATCTCCGGAGGGCAGAGCTTCACTTGAACAACAGGAGACAAAGCTGAAAATGGCACGGGCAGGAAGACCGTTTTCCCTGATCTACACTGGAATTCTCCTCGTGTTATCACCAGAGTTTCTGGGGGCCGGCCCGGTGAGGcagaatgtggaggaggaggCATCTTCAGTATCCAGGGATGTCCGCAGCAAGAGGAGTCTTCCTGTTCACATGCCCGTCCTCCAGCGGCTCCCTGACTTCTGGGGATGGTACAGATTCTTCATGGATACTGGCAACCAGGAAGGAATCGAGGATCTGGACAAGATGTACATGATCTACCTGCAGAACAAGCACCGCTCCGAGGAGGGTCCCACCTTCAACCACTACCTCACCCACCTCAGTGCTATCTACAAGACCTGCGCCGAATCCGACGACCCAGAGTGCATCGCCGAGTCCACCAGCAAGCCCAAGGCCAAGGTGTTGATGCCCTCGCCCATCAAGACCGCCACAGTCGGAATGTGCAACCCTTATATCGACCCCTACTGCCTCTTCCCCATGGCCCCTAAGATGGCTGCCCCAAAGCCTCCTCTGACTCCAGCCCCGGCTCCGGTCAAAGCTGCCCCAGTGCCTGTCCTGAACCCCTTCCTGCCGTACCCTCTGAAGACCCCCACAGGGTTCTACGCCCCAGTCCTGGAGCCCTTCCTCACCGCTGAGCAGAAGACAGAGCTGCTGCGTATCTGTAACCCTGACGACACAGAATGTCTGCAGTACCACCTGCGCGCCGCCTACGGCTACAGGCCCGCTACTGGACCCGCCCCGTCCTATGCTGCCCTGGGCTGCAATCCCACCAAGGACCCCTACTGCCGGCCTCAGCTGGTGGAGAAGGGCCCCTCCGGCTTCTTCCACCTGTACCCCACCTGCGACCCGGCCACCGACCCCCTGTGCATGGCTAGCGTAGCGACCCCTCCTCCCACTTCCCTGGAGACCCCCAAGGAGCAGCACTGCAACCCCCTCTTCGACAAGGGCTGCAACCCCCTCACCGCCACCAAGCTGGCGGGCCTCACCAAGCCCGTCCTGGAGTACACGCCAAAAGACGTACCGGCACCAGCCCCCGCCCCTTTGGCGTGTGACCCGCGCTACGACCCATACTGCCTGCTTGGTGCTGCCGCCGCCCTCTATAAGGCCCCCCCAGCACTGCCTCAGTTCCAGATCCGCTCCCGCCTGGGCGTCCTCGGGAAGACCAAGGAGGGCCATGACTGCTACGTGCACTACGACAAGGACTGCACTCCTGTGAAGGCCAGCAACGAACCCAAGGCCCCCGCCGTACCCCAGTGCCACCCCTACGATTTCACCTGCAACGGCATGTCCGCCCCCGTTACCCTCACCTCTGAGGCCAACAAGGCCAAGAGCGGTGTGATCTTGCCCGATCCCGACTGCGACCCTGAATACGACTACAACTGCCGCCTTCGTCGCGCCGAGGACTCCCCCGCTGCGATGGAATCCAAGACCAAGGAGCCCAAGGAGGAGCAGGTGCAGCAGAAGGCAGGGCCCGGGTACGCTGTCCCACAGTTCGAAGACTTCCTGAGGAGTTACATGGCCATGGGTCAGTACAGGAagaagtacatttaaaaaaacacacgTCACACAAATGTCAACTAGACGCTAGAACGCTAGAACTGGAAGAAAGTGAGACAAGTTcatgttttacacacacacacacacacactcactcactc

Function

NR:

description
uncharacterized protein LOC109872282

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966899.1 False 1820 mRNA 0.60 5 34029842 34035930
XM_036966900.1 True 1816 mRNA 0.60 5 34029842 34035930

Neighbor

gene id symbol gene type direction distance location
LOC110509047 LOC106598344 coding upstream 11468 34013895 ~ 34018374 (+)
LOC110509044 LOC106598377 coding upstream 91815 33928219 ~ 33938027 (+)
cfap57 LOC106598390 coding upstream 179412 33811613 ~ 33850430 (+)
LOC110508288 LOC106598607 coding upstream 219045 33808020 ~ 33810797 (+)
LOC110509039 LOC106598420 coding upstream 413803 33583098 ~ 33616039 (+)
LOC110509059 LOC106598314 coding downstream 91700 34127630 ~ 34173167 (+)
LOC110509053 LOC106598276 coding downstream 215994 34251924 ~ 34257831 (+)
extl2 extl2 coding downstream 233126 34269056 ~ 34278701 (+)
LOC110508236 LOC106598267 coding downstream 316662 34352592 ~ 34409491 (+)
LOC110508231 LOC106598235 coding downstream 463616 34499546 ~ 34568352 (+)
G2130730 NA non-coding upstream 22339 34006810 ~ 34007503 (+)
G2130727 NA non-coding upstream 25797 34003836 ~ 34004045 (+)
G2130725 NA non-coding upstream 29318 33999811 ~ 34000524 (+)
G2130689 NA non-coding upstream 36177 33953703 ~ 33993665 (+)
G2130749 LOC106598333 non-coding downstream 5218 34038792 ~ 34069094 (+)
G2130750 NA non-coding downstream 8533 34044463 ~ 34071017 (+)
G2130881 NA non-coding downstream 42613 34078543 ~ 34078949 (+)
G2130882 NA non-coding downstream 43197 34079127 ~ 34082298 (+)
G2130883 NA non-coding downstream 47592 34083522 ~ 34084306 (+)
G2130731 NA other upstream 21580 34007631 ~ 34008262 (+)
G2129859 NA other upstream 300314 33729148 ~ 33729528 (+)
G2129765 LOC106598425 other upstream 453872 33572108 ~ 33575970 (+)
G2129724 LOC106598452 other upstream 576969 33452212 ~ 33452873 (+)
G2129708 NA other upstream 597735 33431751 ~ 33432107 (+)
G2131383 NA other downstream 567555 34603485 ~ 34604953 (+)
G2131416 NA other downstream 651341 34687271 ~ 34687640 (+)
G2131426 NA other downstream 666276 34702206 ~ 34783418 (+)

Expression


Co-expression Network