LOC110509051 (LOC106598333)


Basic Information

Item Value
gene id LOC110509051
gene name LOC106598333
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34065539 ~ 34075144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966339.1
GTTTTTACTGCAACTTTCACTTTCATTTATCTGCCCAGTACAGACATTTGAAGGATGAGATGGCGGACGCTGCATCATTCAGAGACGAAGTCTCGAATCCAAAGGCCCTGAGACGCAACAGTGTGGAACTATTGCCCCCAAAGATGTCTGAAAGTCCTACAGAGATAAGGATTGTGCTGCTCGGCAAGAATGGCTCTAAGAAGAGTGCTGTCGGGAACTTCATCCTGGAAAGAGGGGCATTTGACCCCAACTATGTACACAACCACTGTGAGAGAGCCAGGGGTCAGGTGGAGGACAAACACATAGCTGTGATCAACACTCCAGACCTGTTAGACCCTAACATGTCACATGACAAACTCTCAGAGGAACTGCGTTGGTGTGTCACTCTGTCTGACCCGGGACCTCATGTGTTCCTGTTGGTGCTGCAGCCTGAGGAGTTCACACAGGAAGAGGGAGACAGAATCAGGAAGATCCTAGACACCCTCAGTGACCGGTCCTTTGACTACTCAATGGTACTGACAACTCATGAAGACAAGAGGGGACACATGGATGAGGATCACCCTCTGAATCAGATGGTCAGAGCCTGTAGAGGGAGGCAGCACCTCATGCACCTCAGTGACCGCACTCAACTTATAGCAGATGTTGACAAGATTGTAAAGGAGAATGGAGGAGGCTATCTCACCTGTGATGTATTTGAAGATACTACAAGTGGCATGGTACAAGGGAAAGAGGAAAAACACAGGAGTAAAACTGATGGAAGTCTCAAATCTTCCTCTGAGGAAGAACTTGGAAAGGATGTTTTGGAACAAGGTGAATCAGCACAACTGGACAAATGGGAGAACATTAGAGAAATTGAATTTGGTAAACAGGTCAACTACATTATGTTTTATATGCATATCCGTATATTAATCAATGTGTACATGTGTTTTACAGTGTCTTCACTCAGGATTCTGCTTCTGGGGAAGAATGATGACAAGAAGAGTACAGTGGGTAACATGATCCTACAGAAAGAGGCTTTTAGGCCTGCTCCTTTCTTCAACTATAAACAGCAATGTGAGTCAGCCAGTGGGAAGGTGAATGGCAAGTCTGTTACTGTTGTAAAGACTCCAGACTTCTTTGCTTCACCTCTGACTGTGCGGTCCCTGATGCAGGAGATGGAGAAATGTaagtctctctctgctcctgggCCTCATGGGGTCCTGCTGGTGTTGAAGCCTGAGAAGttcacagaggagaacagaaacaCATTCAAGTTGATCCTGAGCATATTTGGTAAAGAGGCCTTCAAGTACTCAATGGTGATTATTACTCACGAGGGAGTCACAGGAAATCCTCATCTGAGACAAATGATTGAAGAATGTGGAGGAAGGCATCATGAAATGTACAAACAAGGCTGTGACCACAAAAAGTTAAATCAAAAGATAGAAAATATGGTAGAGGAGAATGAATGGAGATACCTCACCTCCAATGAAGAGACGACACATGATACCATGACACCAAAGGCTCAGAGACTGAACGTGGTGCTGTGTGGCAGAAGAGGAGCTGGGAAGACTTCTATAGCCAATGCCATACTGGGTCAGACAGAGTCCAGTCCAAAGTCCAGCTCCTCCTCAGTGTGtgtgaagagagaaggagaggtgtgtGGTCGGCCGGTCACCCTCATCGAGCTGCCTGCTCTGTATGGAACACATCTCACTCAGGAGGAAGTGATGCGTGAGACTttccactgtgtctctctctgtgactctggAGTCCATGCTTTCCTCATGGTCGTACCTTTGGGTCCAATCACTGATGAAGACAGAGGAGAGTTGGAGACCATCCAGAAGATTCTCAGCTCACGAGTCAATGACTTTGTCATGGTCCTGTTTAGACAGGATAACATTCCAGTCGATAAAACTGCAGTTGACTTTGTGGAACAAAATGCAGACACAAAGCAACTGATCAAGATATGCGGAGGGCGGTATAAAATCTTTGATGCTTCAAAGATTGAGAACGCTAAGCAGACAACAGAACTTGTAACAGAAATAATCAAAATGATGGATCAGAACAGAACCTGCTACACTCTGTACATGTACATGGAGGCTAAACACCAATCAGAACTGGAGGAAAAGAACAGAAGAATCAAGGATTTAGAGGAGAGAATCAGGAACACGTCACAAGGTGCTGAAATGGAGTGTTCCAGCACAGAGTGCATAAGGGTGGTGCTGATTGGGAAAACTGGCAATGGGAAGAGCGCCTCTGCAAACACTATCCTGGGCAGAGATGAATTTGAGTCTAAAATCAGCAGTAATTCTACGACAACAGTTTGCAAGAAGGCAGTCGGCAAAGTTGATGGAAGAACAGTTTCTGTGGTGGACACCCCTGGCCTTTTTGACACAACGTTGTCTAATAAAGATGTTCAGCAAGAGATAGTGAAATGTGTTTCCCTGTCAGCTCCTGGACCCcatgtgtttatcatagtgttgAGTATCGGGAGAATCACACAAGAGGAGCTGAACGCTTTGGACCTCATAGAGAAAACCTTTGGTCCACGGGCAGGAATGTTCTGCTTAGTTCTGTTTACTAGAGGAGATGACTTGGGAACAATGTTGATTCAAGATTACATTGGGGAAAGCAAGATTGCCAAACTGCAAAAATTGATCAGAGATTGTGGAGGGAGATTCCATGTCTTCAACAACAAGGACAACAATAACCGCACACAGGTCAATAAGCTTCTTAAGAAGATTAATGAAATGGTGTCCATGAACAAGGGCAGTTTCTATACCAATGAGATGTTCCAGGAGGCAGAGACCGCCATTAAACAAAAACAGGAAGCAatactgaaggagagagaggcggagataAAGGCTGACATGGAGAAACTGAAGGTCAGCCATGAAACAGACATGGAAAAGATTAAGTCAAAGTTGGAAGAGGAGAGATTGAAAGTTCAGGAGGAAAGACAGCTGAGAGAAaacatgttgagagagagagaggaagctatTCGAAAAGAGCATGGAGACAAGGAGAAAgcagagaagaaagaaagagagttggaggacaaaaaaaagaaagaagatgAAAAGTTGAAAAAAGAAATATGGGACACAGAAAAAGAGAAGATGGAAAAAGAGATAAAAACTCAGGAAATAAAGTTTAAAAACCTCCAAAAAGAAAAGGAAGAAGAATATAACATGAGGATGGAAAAACtgagaaaggaagagaaagacagagaagaaCAGCTTCAAAATCAAGAAAGGAAGTTTGATAAACTAAAAAGGGAACAGGAGGAAGAAATTAAAATGAGACAAAaagaagaggatgagaggagaaagaaggaagaggaagaaagacaaGAGTGGCAAAGCAaaatagaggaaacagagaaagGTCAAACAGAACTCCAAGAGGTCATGCGTAGAGAaaaagaggaatgggaggaacagttgaagaaagaaagagacagacaacAGGAAGAAGAAAGGCTAAGGAGACAGAAGGAGGTACAAACTCTTGTAGATCAAGAGAAAAAACAGAGGAGATTGAGAGTGCAgtttgaaagagagagggaacaataTAGAATAAAGATGAAGGAATCAGAAGcgcagaggagagaaacagagcagaAAGAAAGAGAACGAATAGAACAAGACTttgaagaaaagaggagagagttgacagacaaaatgacaatACAACAAAAGCAGTGGGAGAAAGAACGTGGAGAGGAACAGGAAAGAAGATTTCAAGAGGGTGTAAATAGAAAAGTGGAGGAGAGACTAAGACTAAGAAAACTGGAGGAAACGTTTCAACAAGAACGTGAAGAAGAAaacaggaggaaggagaaggaagatAAAGTCAGGAGAGAACAAGAAGAGAAGAATTTGAAGGAAATGAAGGCAGATTATGAAAGGAAAACAAAAGAAATGATGGATGAATATGAACAAGAGGCCAGAAGACTTGCAGAGGAAATGAATACCTTTAAAGAGAAATATAAAAATGACTTCCAAAAACTATTGGATCAAcatgaagaagagaaggagaaactAAGACAAAAGCACAAAATGGAGACTGATGAATTAAAGGATCAATATGGTCATAATGAAAAAGAACTGACTCATAAAATGAAGGAAATGGAGGAAAAACATAAAATAGAGACAGAAAACATGACAACATTAAAGGGAATCACTATACAAGTGGTAAACAAATGTACTACACAGTGagagatcagtcgtcctggtccctttgcagaaaaacagccccaaagcatgatgtttctacccccatgcttcacagtaggtatggtgttctttggatgcaactca

Function

NR:

description
uncharacterized protein LOC110509051

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966339.1 True 4307 mRNA 0.43 5 34065539 34075144

Neighbor

gene id symbol gene type direction distance location
LOC110509052 LOC106598333 coding downstream 7195 34038788 ~ 34058344 (-)
LOC110509046 LOC106598598 coding downstream 64683 33997091 ~ 34000856 (-)
LOC110509045 LOC106598354 coding downstream 74749 33977576 ~ 33990790 (-)
LOC110509043 LOC106598366 coding downstream 92802 33953697 ~ 33972737 (-)
LOC118944832 LOC106598084 coding downstream 149334 33914350 ~ 33916205 (-)
LOC118944872 NA coding upstream 172801 34247945 ~ 34250438 (-)
zgc:110366 LOC105007548 coding upstream 183051 34258195 ~ 34269017 (-)
vcam1a LOC106598299 coding upstream 209124 34284268 ~ 34300628 (-)
LOC110509056 LOC106598260 coding upstream 229562 34304706 ~ 34321590 (-)
LOC110509050 LOC106598248 coding upstream 347028 34422172 ~ 34481859 (-)
G2130775 NA non-coding downstream 26869 34037063 ~ 34038670 (-)
G2130865 NA non-coding downstream 36796 34028519 ~ 34028743 (-)
G2130859 NA non-coding downstream 43482 34021828 ~ 34022057 (-)
G2130857 NA non-coding downstream 44796 34020505 ~ 34020743 (-)
G2130856 NA non-coding downstream 45273 34020049 ~ 34020266 (-)
G2131112 NA non-coding upstream 18400 34093544 ~ 34094130 (-)
G2131151 NA non-coding upstream 66914 34142058 ~ 34207960 (-)
G2131161 NA non-coding upstream 94207 34169351 ~ 34173099 (-)
G2131194 NA non-coding upstream 166237 34241381 ~ 34241613 (-)
G2131200 LOC106598276 non-coding upstream 176783 34251927 ~ 34252855 (-)
G2130393 NA other downstream 666455 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 1835325 32228406 ~ 32230258 (-)
asip2b agrp2 other downstream 1900517 32062049 ~ 32187519 (-)
LOC110508982 NA other downstream 2036981 32023057 ~ 32029225 (-)
G2131621 NA other upstream 410725 34485869 ~ 34486176 (-)
G2131641 NA other upstream 441378 34516522 ~ 34518129 (-)
lyrm4 lyrm4 other upstream 1930345 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1948636 36023714 ~ 36025735 (-)
G2132971 NA other upstream 2149069 36224213 ~ 36225379 (-)

Expression


Co-expression Network