vcam1a (LOC106598299)


Basic Information

Item Value
gene id vcam1a
gene name LOC106598299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34284268 ~ 34300628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590021.2
TCTTTTTTTGCAGGAATCTTCTAGCTTGGATGGAAGGATCGAACAAAGGGAAGGAGGACAGTTATCCTGCTGACTAAGACATGGAAATAGCCTATCTCTCTCCCTCCTGACACATGTCAATGACCTGATGCATGGCCTCTACAGCAGTGCTTGGCCCCACACTCAGTTACCAGTGATCTATTCTGCCACATCCCAGGGAAAGGAGGGAGTGGAACCACCCATCCATCATAGTCATTGACAAGCATGACTGCGTTCGCGCTTTGGATAGTATTGCTGCCTACTGCAGCGTCGAAATTTGTCCTAAACCTCACACCGAAGCATCCCATGGCTCGAGTCGGCGACAGTCTGGTCCTGACGTGCAAAGCCAGTGGTTGCGCCGAAGCCGTCACGTTCACCTGGTCTTCATTGATTGACCAGTCACTCTACGGTAAAACGGAGACCAACGGGACAGTGTCCCTGCAAATATTTAACCCGTTGGGAATTCATCACATCAACACGGTCGTCTGTAAGGCCACATGCAGAACCAAAGGAGAAGATACACAAAACGCGCAAACGTCTACTAAGGTGAACGTCTACGCCTTACCAAAGGATCCCACCATATCAAGAAGTGACCTTTTGACTGAGGGTCAGGAGAGTAACCTCACCTGTACAGTTCCAGATGTGTACCCAGCTGAACGTCTAATCATTGAGTGGCTACTGGGAGATGAAGTTCTCCTCAAACAAGATGAACATCTGGAAGTCCAGACTGTCACCTCAGTGTTGAAATACAGACCGACAGCCCAGAACAATGGACAGAATGTTACCTGCAGAGCCACGCTGGACATTGGGATTGACAAGAGAACCAGAGAGACTGTCGCATCAATGACCGTTCAATATTCCCCCAGAAATATCACTATCTCAGAGAACACTCAGGTGAAAATCGGAGACGGTTTTACACTGACGTGTCGTGCTGAGGGGAACCCTGAACCTACTGTGTTGTGGAGAAAACTGGACCAAGATGGCCGCTCAGTCGTGGCAGGAGAGGGAGCGACCCTATTGGTGGAAGAAGCGTCATGGTCCCACGGGGGAGAGTATGAATGCGTGGCCCACAACGTCGTAGGAAACCTTACAGCTCACATGACTGTTAATGTTCAAGGTCCTCCAGAGAAGCCTGTTCTTTATCTGAGCCCATCTGGTGAGCTGAAAGCGGGGGACAGTGTGACCATTACCTGCCAATCAGAGAGTGGGCCGCAGGGGCGTGTGGCGTTACGCCAGTTGACCGGCAGTCAGGGGGCGGAGCTAGAGTCCAACCAGGGCCACACCTCCATCACTGTCCAATCGCTGACAGCTAGAGACTCGGGACTGTACGAATGTCAGGCTACCAATCCCTATGGGAAACAGACATCTTCCATTAACATCACAGTCTTCAATGAGCTTTATACAGAGACCCAGAGAACCACAACGACTGTCGCATCAATGACAGTTCAATATTCCCCCAGAAATATCACTATCTCAGAGAACACTCAGGTGAAAATCGGAGACGGTTTTACACTGACGTGTCGTGCTGAGGGGAACCCTGAACCTACTGTGTTGTGGAGAAAACTGGACCAAGATGGCCGCTCAGTCGTGGCAGGAGAGGGAGCGACCCTATTGGTGGAAGAAGCGTCATGGTCCCACGGGGGAGAGTATGAATGCGTGGCCCACAACGTCGTAGGAAACCTTACAGCTCACATGACTGTTAATGTTCAAGCGCCGCCCACAAACCTGTCCGTGGAGGTGTTCCCGTCTGCTGAGTTTGAGAAGGGGCAGAACGTGACCATCTGGAGCTGGGCTGTGGGCGTTCCCGCCCCCTCCGCCACCCTGGTGAGGCTGCGGGATGGGGTGGAGATGCACTCCTCTGACGGAACCTTCCACCTGGTCCACCTGGGCCCGGAGCACGCTGGGCTCTACCTGCTCAATGTCACCAATGTAGTGGGACACCAGAGCCTCAGCTTCAGCCTCAGCGTCAGCATCCAGGATAAATCCGTCAATCCAAAGACCGTCATCATACCTGCAGCGTGCTTTGTTTTCATGACCGCTGCTGCCACGACTCTGATGCGATTCCTGAAGAGAGCAAAACAGGCAAATTCATATGAACTTGAAAGGACAGTTTAGACTCCCCccatggagggaagagagatggactCAACATCAGTCTGCAATTGAGCACTGTAACAGTCCACTTCTAGCATCGAGGGGGTGTTTTCCTCAGAGGTGGACAGAGACTGTATTCTTCGTTGCTATTGGTCAAGTGAAGCTCAAACACGCACGCACTGAAATCATGGTCTCCATTCAATCCGTATCGTGGAAGTTGattgaaatgtaaatgttttccAGTTGAGCCGACGGATACAGCAGTCtacgggaacattgccttttaaAATTCAAATTGCGCTACAGCGAAGAACCTTCCGCGATACGGACTGTATTGAGGCCTAATTGTTTGTTTATGCGTGTTCTCTACTGGTGGATGTACAAAGCCATGAATGTAACTGATGATTTGCACAGGTATGACTTCTAGCATCTTGTAATACCTTTAGTCAACCACCAGCCCAGGACATTGCGTCACTGCAGCATCAGACCTTCTTTCACTAGAGTTTATATTATTGctgtatataattttttttaaagaaatgtgaATTAATATGTTTTGTACAGACTTATTGTAATAAAGATGACAATGAAAAGGT

Function

NR:

description
PREDICTED: vascular cell adhesion protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590021.2 True 2708 mRNA 0.50 10 34284268 34300628

Neighbor

gene id symbol gene type direction distance location
zgc:110366 LOC105007548 coding downstream 15251 34258195 ~ 34269017 (-)
LOC118944872 NA coding downstream 33830 34247945 ~ 34250438 (-)
LOC110509051 LOC106598333 coding downstream 209124 34065539 ~ 34075144 (-)
LOC110509052 LOC106598333 coding downstream 225924 34038788 ~ 34058344 (-)
LOC110509046 LOC106598598 coding downstream 283412 33997091 ~ 34000856 (-)
LOC110509056 LOC106598260 coding upstream 4078 34304706 ~ 34321590 (-)
LOC110509050 LOC106598248 coding upstream 121544 34422172 ~ 34481859 (-)
LOC110508232 NA coding upstream 271405 34572033 ~ 34604132 (-)
LOC110509072 atp1b3 coding upstream 412639 34713267 ~ 34728197 (-)
gk5 gk5 coding upstream 436834 34737462 ~ 34761423 (-)
G2131219 NA non-coding downstream 236 34283833 ~ 34284032 (-)
G2131216 NA non-coding downstream 2963 34281096 ~ 34281305 (-)
G2131215 NA non-coding downstream 4777 34279161 ~ 34279491 (-)
G2131211 NA non-coding downstream 18667 34263822 ~ 34265601 (-)
G2131210 NA non-coding downstream 21878 34261775 ~ 34262390 (-)
G2131234 NA non-coding upstream 21273 34321901 ~ 34322185 (-)
G2131208 NA non-coding upstream 75284 34375912 ~ 34379555 (-)
G2131279 NA non-coding upstream 97089 34397717 ~ 34397987 (-)
G2131282 NA non-coding upstream 100328 34400956 ~ 34401502 (-)
G2130780 LOC106598333 other downstream 216195 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 217603 34040206 ~ 34066665 (-)
G2130393 NA other downstream 885184 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 2054054 32228406 ~ 32230258 (-)
G2131621 NA other upstream 185241 34485869 ~ 34486176 (-)
G2131641 NA other upstream 215894 34516522 ~ 34518129 (-)
lyrm4 lyrm4 other upstream 1704861 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1723152 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1923585 36224213 ~ 36225379 (-)

Expression


Co-expression Network