LOC110509056 (LOC106598260)


Basic Information

Item Value
gene id LOC110509056
gene name LOC106598260
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34304706 ~ 34321590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590008.2
ATCTCGGTAAGCATAGAATCTTTATCCCAACCCGGCAGTGACCGTTGTGCGACGTTCGGTTGGGGTCATAAACATGGCGTGGAGAGGATATTTTGTAAAATGGACCAAAACAGAATGTATAAATTCTGTCTCCACAGTTTCGAGAGGTAGCAGGTTCACCCTCCACCCCCAGCAGAGGTGTGGTTTCCGGAAAGAAGCAAGGAAACCAGAGACATGGAAGAGGGACCGGGGCATCCCAGAAGAAACAGGCCCTCCCCCCTCTGAGGCCGCCGATGCGGTGGTGTCTCGGAAAGCGGTGCCCCTTAAATCAGGACCCCCACCCCCTGGCGCGGCCCCCAGGCATACTGGGAAGCTGTTCAAGCCCTTTATGTTCACAATAGGGTTTACAGGGTGCTCCTTTGGTGCGGCCGCCATCTTGCAATACGAGTCCTTGAAGTCACGAGTGAAGACGGCCAAGGACGAGGCTGAGCAGGAGAAAAACGGAAAGGcatcacaaaacatgacatactGGCACAACTGGTGGAACCAGCTAACAGACTTCCAGAAACAGGTCATCCTGCTCATGTCCTTTGTAGACGATTTCTGGAGCAGCCTGACTGAGGGTCAGCAGATGGCCACTGGGATCATAGCGGTCAATGCTGTGGTGCTCTGCTGTTGGCGAATACCCTCCATGCAACGATTCATGGTCAAGTACTTTACTGCCAACCCAGCCTCCAaGACGCGGTGCCTTCCCATGCTCCTCTCCACCTTCAGCCATTACTCTATAATCCACATGGCGGCCAACATGTACGTCCTGTGGACCTTCTCCTCCAGCATCGTCTCTCTCCTGGGGAAGGAGCAGTTCCTCGCTGTCTATCTCTCTGCTGGTGTGATCTCCACTATGGTGAGCTACTTGTGTAAGACCAGCACGGGACGCCTGCATCCCTCTCTTGGGGCGTCGGGGGCCATCATGACGGTCCTGGCCGCGGTCTGCACCAAGATGCCCGAGGCCAAACTGGGAATCATCCTGCTGCCCATGGTCAGCTTCACTGCAGGCAACGCCTTGAAAGCGATCGTTGCCATGGATGCAGCGGGGCTCATTATGGGATGGAGGCTGTTTGATCATGCTGCTCACCTTGGAGGAGCCCTCTTCGGAGTGTGGTATGTAGCATACGGCCACAAGCTGATGTGGAGGAAGAGGGAGCCACTGGTCAAGGCATGGCACAGCCTGAGATCTCAGGCCCCTGGTGGACGGGGCAGGCCTGGGGGTTCGGGTGGCGACGGGGGCAGACCTGGACCCCCAACATAGCACTCTGGGAAGTTGGCCCATAACCACTGATCAGGTGTCAGATATTCCTCACCCCCCCAATTGGTTAGGATTGGCTGTAGGGTGTATCTGAACCTAAATCTGTGGTTAGGGGGAATCTTCTACCTCAAGAAGCCTTTTTTTGGTACTTATGCCTGGTGATATCCAGCTGACAGCTGTGGAGGGCGGGACCCAGCACCCCAAACCTCTGTTCTTCTAGTTGGCGCGTTCCTCTGCCCAGGTGTTGCTGACGCATGCCTTATCTGACgtctggataggtattttaagtatcagccaaccacatcatatgttatagcaatctggagCCCGACGGCACAGTCAATGacgtggcacgcaaccattggttgatgcatgcaacatcTGAGCAGGGGAACGCAACCAATCTAATCAGAGAGAGTGGACATATTTGTAACTAAGATGGCAGTCTTGTTTTAGGAGGATTTCAGACAGTACTCTATTGTAACTAAGTCCTAAGGGATGAATGATTAATTTGGTTTGATAACAGTGACTGTACTCTAGTACAGATGATGTtggctttatcattatggggtagtttCTATGAAGATGTGAGATGTTACCATAGAGATATTGTATTACATAATGTATTCATATTCTATGTCTATGGTTGATACAGTGACTGCTTCCTGTTCTCTAAACCTGACTTCCTGTTTGTAAGGAAGTGTTTAACGGAGAATGACCGTCCTGGACTAAAACAACAAACTTCCTCATTGACCATAAGAACTTCAACTTCCTTGTAGTTTTGTAGGTGTGCTGGCGCTGCCCGAGGTTTCTGAAAGGTTGAGGTGCTTATCTTAGTAAAACATTTTGTAAATCCTGAGCCTTACAAAAAAGGTACATAACACGCCAAAAATGTCCTCAACACTGCGGTACTCTTTAATTAAAAAGGTCACCTTCATCTTCACTGGGGTAGTACATTTGGGTTTAAAGGTCATACTTCAGGATTTTCCCAGAGTcaagatgaactcatggatgtCATGTTTATATCTGCATGCAGTAGAGGTAGTTTTGCTGCACGCAGCGCTGGCACAAGGCAGTTTCTCTGGACCCCTGTAAGGTCGGAGTTCGTCCCCCTCCTCCCtaaaaataaaaatccattcACAAAGTATAGACTGCAGAttgctgtccgtggtgctgaaattGCGACGTGTCTATGCAGCGGGCCGATCGaatcaacctggtctcagagcatttcgtattgttctgtatgtaaatccgagacactccatttagtatgatatgttacgaatttgcagacgtacaatgtaaaaaaaattgcaaaacGAGTTaagaattctagctaggtggctaacattagctaggctaggggttaagtttaagagttagtttaaagggttgggagaagggttagctaacatgctaggtAGTTGCTAAGCAGTTGCAAAGTAGCAAGTAGTTAaaagttgctaaaatgctaaagaTCTCCTCGATGAGATTTGAgctcgcaacctttgggttggtAGACATTCGCGTTATACGccaagtaaccatctgtcttatgtaaccatacgaAATGGAGTGTCCttagatttacgtacagaataatacaacattctctgagaccaggctgatggaaTTGATGATAGGGTTTCTGTGGTGCCCGAGCATGTAGCCTATAGCGTTGCTTCAGCTAATGGATATGTTTATTAGGCCTATTTGGTTGTCATTTTCTCATGTTAAGCCTAACATTTCACTAAGCTATACAGGGTGTTACAAGGCTGCCATGATTTAGACTGCTGGCTGGCGGCAATAATGTAATGACTTGTTCTGTAATTAAAGTTTGAATTTCAAACATTGCAGATTGGTCAAATACATTTTCGGTGCAAcagattgatttaaaaaaataataataatacaattgtcCTGTATAGCCTACCTGAACCTGCATGACATGAGCTGTCCTCATGCTCTCTCCCAGCTTGGATAGGAAGTTGTGTGTAAAACCAGTCTATTAATGCCAAATAATAGTCAGCACACCTTCAAAACACTAGCTTACGTTGTTTCATTATGCAGTGTAGCCTACTATCTATAcctatatacagtatttatacaAATTACACATCAAAAAGCCTAACAATGAGGACAAATCCTTGGCTTGGGATACATTTTTCCACAATTTAGTGTTGAACTCAGCAGGTTTTGTCTGGCTAATAGCTGACAGAAATGGGCTGCAATCAAGGTAATTTAAGTCCAACTTGAGACTCCCCTGAGCTTCTGAGACATTGTACATTATATGTCCATTACACAATTTAAACTTAGTCTTGAATGATGTATGCCAAGATATACCAGAGATAAGACTGTTGATATTGCTACCACATAACTCAAACACAGCATCACCAGTATGAATAAAATCGCAAACCACTTTTTTAgtttgagcccccccccccccccccccccataactgTTGTCCAGTATCCTACACAGCTTCCTGTACAGTTACTCTTTCCGGAACGTTTTGAAGCCGGTCATTAAGGAGAAACGAGAGGCTCAATTAAAGATGTTGCAGAACTGCTGTATTTAAATCACCACTCCCTGCTGTTGCTATGGCAATCAAACTGTTTTTAACTGTCGCTTTTGCGGGGAGATCGTTTTATAGAAACTAAAACTCACAAACAACTACTTAAGAATTAAACATTAGGGTCTCGGTCTGATATGCGTTTTTGAACACCTGCCCAGTGGGCAAAACCTGGTTGAAAAGACGTCAGTATGACGTATTTTTATGACTGCTCATTCTGGTTGGAAAAGGATGTTGTTTTTACGTATTTGTCTGACGACAATACGACCAGTTGGTCATAATTGTGACCATTATATTATGTAGCCTACTGGTCATAGTTAATACCGTCATAACCTGGTAATGACCACATGACTACAGCTTATTAcctactgtaaaaaaaatattgcagAGAATAAAGTTGGAAATTGAAA
>TU2436815
CAGTATCCTACACAGCTTCCTGTACAGTTACTCTTTCCGGAACGTTTTGAAGCCGGTCATTAAGGAGAAACGAGAGGCTCAATTAAAGATGTTGCAGAACTGCTGTATTTAAATCACCACTCCCTGCTGTTGCTATGGCAATCAAACTGTTTTTAACTGTCGCTTTTGCGGGGAGATCGTTTTATAGAAACTAAAACTCACAAACAACTACTTAAGAATTAAACATTAGGGTCTCGGTCTGATATGCGTTTTTGAACACCTGCCCAGTGGGCAAAACCTGGTTGAAAAGACGTCAGTATGACGTATTTTTATGACTGCTCATTCTGGTTGGAAAAGGATGTTGTTTTTACGTATTTGTCTGACGACAATACGACCAGTTGGTCATAATTGTGACCATTATATTATGTAGCCTACTGGTCATAGTTAATACCGTCATAACCTGGTAATGACCACATGACTACAGCTTATTAcctactgtaaaaaaaatattgcag

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590008.2 False 4270 mRNA 0.46 10 34304706 34321590
TU2436815 True 494 lncRNA 0.39 1 34304728 34305221

Neighbor

gene id symbol gene type direction distance location
vcam1a LOC106598299 coding downstream 4078 34284268 ~ 34300628 (-)
zgc:110366 LOC105007548 coding downstream 35689 34258195 ~ 34269017 (-)
LOC118944872 NA coding downstream 54268 34247945 ~ 34250438 (-)
LOC110509051 LOC106598333 coding downstream 229562 34065539 ~ 34075144 (-)
LOC110509052 LOC106598333 coding downstream 246362 34038788 ~ 34058344 (-)
LOC110509050 LOC106598248 coding upstream 100582 34422172 ~ 34481859 (-)
LOC110508232 NA coding upstream 250443 34572033 ~ 34604132 (-)
LOC110509072 atp1b3 coding upstream 391677 34713267 ~ 34728197 (-)
gk5 gk5 coding upstream 415872 34737462 ~ 34761423 (-)
LOC110509071 LOC106598156 coding upstream 452165 34773755 ~ 34806814 (-)
G2131219 NA non-coding downstream 20674 34283833 ~ 34284032 (-)
G2131216 NA non-coding downstream 23401 34281096 ~ 34281305 (-)
G2131215 NA non-coding downstream 25215 34279161 ~ 34279491 (-)
G2131211 NA non-coding downstream 39105 34263822 ~ 34265601 (-)
G2131210 NA non-coding downstream 42316 34261775 ~ 34262390 (-)
G2131234 NA non-coding upstream 311 34321901 ~ 34322185 (-)
G2131208 NA non-coding upstream 54322 34375912 ~ 34379555 (-)
G2131279 NA non-coding upstream 76127 34397717 ~ 34397987 (-)
G2131282 NA non-coding upstream 79366 34400956 ~ 34401502 (-)
G2131283 NA non-coding upstream 82046 34403636 ~ 34404048 (-)
G2130780 LOC106598333 other downstream 236633 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 238041 34040206 ~ 34066665 (-)
G2130393 NA other downstream 905622 33398547 ~ 33399084 (-)
LOC110508997 NA other downstream 2074492 32228406 ~ 32230258 (-)
G2131621 NA other upstream 164279 34485869 ~ 34486176 (-)
G2131641 NA other upstream 194932 34516522 ~ 34518129 (-)
lyrm4 lyrm4 other upstream 1683899 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1702190 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1902623 36224213 ~ 36225379 (-)

Expression


Co-expression Network