LOC110508231 (LOC106598235)


Basic Information

Item Value
gene id LOC110508231
gene name LOC106598235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34499546 ~ 34568352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966381.1
GCCAGTCATATTTCAAGACCTCTCTTTGCCTCGCTTGCATCGGCAGCAGGTGTTATCATACAATGATAACGAGTCGCGAGAGACAAGGCATATCGCTCTACAATATTCACTCATATACATACTATTGTGGATGCGGAGGAACCGTTGAGTTGAGGACGGGGTCAACACACGAATAAGGTGTAGCCTTCAGTAGCTTTGAAGTGACCCTAACATATCACAGGGTGCAGCACTTAAGTGGGTGGAGTCATCTGAAGGAGTGACCAATGAGTCCCTTCGCTTGCTGGGTGACCTTCTGTTCTCTGCCTATCTGGTGGATCGTCCTGCTGCACATCTCTGAACAGAGGGTCAATGCTGGAGAGACGCTGGGCTCGTGTGATGGCAGAGACTGCTCAGTGTGCAACTGTCTCCCCGCCAAGGGAGCCCGGGGGGCCCCAGGGAAGCTGGGGAAGCAGGGGCCACAGGGCCCAGATGGCATCAGGGGCTCCGCAGGGCCTcacggagagaaggggaggaggggtgtcGAGGGACCACCTGGGCTGGATGGGAAGAAAGGGGAAAGGGGTCCGACTGGTCACCCAGGATTTCCTGGTATCGATGGTGTCAATGGTCACGTTGGTGCTGGGGGGAATCCTGGCCTGCCGGGGCTAGACGGCTGTAACGGGACCAGGGGACAGACGGGGATCCCCGGTGTTCATGGCACGAACGGATTCCCTGGACCCAGGGGATATCTCGGTCCCAAAGGAACAAAAGGGGAGCCTGTCTACGATGTATCTGGACCTGGCCTTCCTGGCGACCCTGGGCCTCCTGGAAGATCTGGATCACCTGGCCATGCGGGACCCAAGGGTCACACAGGCCCTGCTGGACCTAATGGAAATGATgGTCCAGACGGTCCACCCGGGGCTAGAGGAGAACCAGGTGACACTGGCAGATCACTGCCGGGCATTAAAGGTGATGAGGGGGACCAGGGTCAACCAGGGCCTCCGGGGCCTGAGGAGATCGTCGAGCCTCCAGACCTTTTCTACCCCAAAGGAGACAAGGGGGATAAAGGGGTTCCTGGACCATGTGGACCCAGAGGCATaactGGAGAAAAATCCTATGAAGGACTAAAGGGAGAAACTGGAATCCGTGGCTTTCCTGGCCCTCGGGGTTACATTGGATCTACCGGCCTGCCTGGAACGCCTGGACCACAGGGCTATCCTGGAGACCAAGGGTTTCCTGGTCTGATCGGCAGGTCAGGACCAACGGGCTTCCCAGGAGACAAAGGCATCAGAGGACCGGCGAGCCAAATATACCACAATTCCACTGTAGCAGGTTACCCTGGTGATCCCGGCCCCCAGGGTCCAAGGGGAGCACCAGGAGACATTGGAGAGATGGGCATTAATGGACCTCCCGGACCACCAGGGGTATTAAGCTCCACAGGTCAACCAGGGCAGCTAGGTTACCCCGGTCTCCCTGGTCCTAAGGGTTTAAAGGGGGAGCCGGGAAGGTACTACACTATAGAGTCAATACCAGGACAACCAGGTGAAAGAGGGCGTCCCGGAGCCAAGGGGTTCAGAGGCCCCCCGGGTCATCCAGGATGTGGAGGCATTTATTGTGTTCCTGGTGAGCCGGGTGTACGAGGAGACGATGGCGATACCGGATATCCAGGATTAACGGGATACAAAGGAGAAAAAGGCTACAACGGTGAGTGTGAGTGTACGTACGAGAATGGTCACAGAGGGATCCCAGGTCCTCCGGGCCCCCGCGGACCCCTAGGTTATGATGGGCTGCCAGGGCACAGCGGAGAGAAAGGTGACCATGGATATAATGGGGACCCTGGCTCACAAGGATCCCACGGCAACCCAGGCAGGCCTGGTTACAATGGAGTGAAGGGACAGAAGGGAGAGTCCTATGTGACCAACTATAAAGGTGCGAAGGGTGACCCGGGCTTCAATGGCCCCAACGGACCGCATGGCGCCACCGGTCGACCAGGATCCGATGGCTTCCCTGGCGCTGTGGGAGACCCCGGACCCCCGGGTGACGGTTACGGTGGCTTGGTAGGTGACAAAGGCTACCCAGGGCTCCATGGTCCTGAAGGCCCCCCAGGCAGACCGGGCCCCCCAGGCCCTGGTGCTCCAGGCCGCCATGGCCACCAAGGGCCCCCAGGGGATGCGGGCCTCCCAGGTCCCCCTGGACAAACTGGACAACCTGGACCTCTAGGCGAGGTTCTGCCCTGTGGCCCTTCCAACCCTGGCCTACCTGGCTTAAAGGGTCTACTTGGGCCCCCAGGGAATCCTGGACCACCAGGACCACTTGGTTTCCCAGGCCCCACAGGTTCCCTTGGACCTCAAGGCATGAGAGGAGATGACGGGACAGATGGAGGAACTGGACCACCAGGACACCAAGGATGTGTTGGAGATAACGGTGACCCTGGTCAACCTGGAATCAACCTGGACGGACCACCAGGACTCCGTGGACCACCAGGCTCTCCAGGCTGGCCGGGACCTCCAGGAGACACCTTCAACACCGGACCTGGTCCCGTGGGTCCACCTGGACTACCTGGGTTACTGGGACCCAAGGGAGATCCTGGTTTGCCAGGCATCCCTGGACCTCCAGGGGGATCAGGCCCGTACGGAGGTGTGGGTTACAAGGGGTCAAAAGGAGACACTGGGGACCCAGGACCGAACGGTCCTCCAGGGCCAACAGAATGTAGAGAGAAAGGAGCTGTTGGCCCACCGGGAGCCTCAGGACCACCAGGAGTCAGGGGCCCACCGGGTTTCCGTGGTGATAAAGGACGTAAGGGTGCTATGGGTCCTCCTGGACGTGGAGTGAAGGGACCAGTAGGGATCCCCGGGCCTCCTGGTCCCCCGGGACCCGTTGGTGCCAAAGGTTTCAGTGGGTCACCAGGTGTCCCGGGCTTCCCTGGTGTAACAGGGACCAAAGGGCCCAGGGGATATCCTGGTAGAGATGGATCGGCTATTCCTGGTACACCGGGTCGGCCTGGAAACCCAGGATCCCGTGGGAGGCAAGGGGAGAGGGGTTTCACAGGACGTGACGGTCAAGATGGAGACCAGGGGTACAAAGGAGCCAAAGGTCATAGAGGTCCCCCCGGAAGTCCTGGCCCAGTAGGAGTCATAACCGTTAAAGGACAGAAGGGCTCTGAAGGACCACCAGGAGAGGATGGGATCACTGGAGCCAGAGGTTCCAAGGGCTCAAGTGGGTCACCAGGTAAACCAGGGGGGAATGGACAGGATGGTCCTCCTGGATATGAGAAAGGGCTCCCAGGACAACCTGGCAGACCTGGTCCCCCTGGACCCCCCGGACCTCGAGGACCTAAAGGCTTGAGTGGTATAGTtggtttccctggaccagtcggTGATAAGGGGGACCCTGGGCACACGGGCCCTCCTGGGAACCCAGGCCTTCCAGGAATGACAGGCTTACAGGGTGACCCAGGAGACTCTATAGGACAACCAGGACTACCTGGGCCACCGGGTCCTCCAGGAGAATGCAGAACCTTAGATCCAAAGGGAGACCCAGGAGATCCAGGGAGCCCAGGACCCAGAGGCTCACCAGGACAGCCTGGTGTCCACGGAGCCCGTGGACCACTGGGTGGCCCAGgtttcCCTGGTCCCTCAGGTCCGCCGGGTCGTCCAGGCTCCCCAGGGCCTCCCGGAGGAATTCTCGGAGGTCAAGGCCCCAAGGGCAATCCTGGACTGCCCGGTCCTCCAGGTTTCCCGGGACCCCCAGGGCTGCATGGTCTGAACGGGCTCCAAGGCCAAAAAGGAGAGAAGGGAGCAAGAGGACCAGATGTGTTGGGCCCACGAGGGCCATCTGGGTTCCCCGGACTCAAAGGCCACACAGGCTCCCAGGGACCCCCGGGAACGTCTTACCCCGGATCTAAAGGCCTAAGGGGCCCTCCAGGCTACCAAGGACCAAAAGGAGTCACTGGTGAGCCCGGTGGTTCAGGTGGAGAGTGCTCAGAATGTCACAGAGGACCCAATGGAGAGCCAGGATACGAAGGCATTCATGGACCTccagGACCACCCGGTGAACCGGGTCCTGCTGGTACTGCAGAGCCATCTCCAGGAGACCCAGGCCCCCAAGGGCCACCAGGGCCCAATGGCCATAAAGGACAGAGAGGCCCCCCAGGACCCCTAGGGCCAACAGACTACTCAGGATCACAAGGACCCAAAGGTGCCAGAGGCCCTGAGGGTCACATGGGCCCCAACGGAGCAAGAGGTCGTCCAGGCGCCTACGGCCTCCTGGGGCCCAAAGGTGACAAAGGCAAACCTGGGGATGCAGGTCCCAAAGGCCTGCCCGGTCAGGTTTTGGATGGTGTCCTTACCACTCAGGAACCCTACCGTGGGATCCATGGCCCCTCAGGTCCATCAGGTCCAAATGGTCCCCCGGGAAAGGCTGGGCCCCGTGGGAACCCTGGGCCTCACGGTCCTAAGGGCCCAGCTGGGTCACGAGGGCCCCCAGGGAGAATTGGACCTCCAGGTACACCTGGACCTTTAGGAGACCCAGGCGATCATGGACAGCAAGGTTTTGTGGGACATCAGgGTCCTCCGGGTTCTCAGGGTGACCGTGGCTACCCCGGTTCCACTGGCTCTGTGAGTTCAGGCTTCCTGCTGGTGATCCACAGCCAGTCGGTGGAGGTCCCTGTGTGTCCCGAGGGCAGCAGCCCCTTGTGGACCGGCTATAGCCTGTTCTACCTGGAGGGGcaggagaggacacacacacaggacctgggCCAGGCCGGCTCATGTCTGCGTATCTTCAGCACCATGCCCTTCTCCTACTGCAACACAGGTACCTGTGACTACGCCAGCCGCAACGACAAATCCTACTGGCTTTCCACCACCGCTGCCGTGCCCATGATGCCCGTGTCGGGCCACGACATCCGTGCCCATATCAGCCGCTGTGCCGTGTGTGAGACACCCTCACCCGCTGTGGCAGTGCACAGCCAGGATTATATCGCCCCCACCTGCCCCCCTGGGTGGAGGAGTCTGTGGGCTGGCTACTCCTTCCTCATGCACTCTGGAGCGGGCGACGAGGGTGGCGGCCAATCTCTGACCTCATCCGGCAGCTGCCTGCGAGACTTCCGTGCCCAGCCCTTTGTGGAGTGCCAGGGCCCGCGGGGCACATGCCACTACTTCGCCAATGTCTACAGCTTCTGGCTGACCCATGTTTCCCTGGACGAGCAGTTTGGCCCCGGCCCCGTCCCTAGCGTGTTGAAGGCCGCCGATCAACAGCGCCAGCAGGCCAGCCGCTGCCACGTGTGTACCAAGGGCTGAACACCTTATGTCACCTCCGATTTCTAGTTTTGTTTTGTTGGTATTTTGTATGTTTATTGGATTGAGAGAGAAGAGCGTGTTCTGAAAAGGCAGTAGAACAGATTTCAATCCTTGCTGGCAGCGGCACATCGTACATGTGCTCCACACCActagaccaccccaggccacGTCACCTCCTATTTCATCCATAAGTCAAGTTGCCTCATAATATGATTACCAAACTACCCCGACCCCACTACATCACTGTCACAATGCTGTGCTATGCCAGCCCTATCAGCGCCCTGTCCCACTTGTCAGGGATGCATACAATCATCATCTACTACTATTTACCATTTTTGACTATGGTGGCTAGTATAACGAAACCATAGTGTGGATTGCAGTCTATACTAGACCACTTTCAAGGGAAGGAAACATCTATCAAATGTGGAGGATGATGTCATTTtgctgaactatccctttaaccgACTTCGTAATTCGTAAAGCTTGCTCATTGTTTTCGTGACTTTGTCCACTAACCCATCTATTGGCAAAATGGTTCAGCACTGATCAACCTGCACTGAGCACCTCCcagatcaggatgtgacagtGGACACTGGGAAAGGAGTGAGAACACACTGGATTACTCAGAGCGCTCATCATTGGAAAACTAGCTATTCACTCCAACAAAGACTACAGGCCAAAAGACACAGTATGCCTTAATCAGAAATAATCTTAACATGTGTAGTTAAAATAACCAATAATCTAGTATTGTTGTATCAATATCCATGTCATAATGTTAGAATTAAGCGACAAGGCGccaggggtgtggtatatggccaatataccacggctaagggctgttcttggatattggccatatatcacaaacccccaaggtgccttattgctataaaaatgtattgctaAAAAAAAACGTGTTTACTGTTCAATTTTTGTCGGTAACAAATATTTTTGTGTCAATGCCgtggtatattgtctgatatacacACGGCTGGAAtgctgtttcagccaatcagcatccaggacccaaacTACCCTGTTTATAATTTATCATTTACACTACAGCTATTACGGCTTTGAAATGCACTGGTCCCATTTTTTTTCCTACATCATAACGGTTTTATATACCGGTTTTTAGTTGTGTAAAATTAAATTACAAATTAATTTGTTTAATTTAGTTTCTCGTGGTGTGACTATCAATTATGTTCATGTTGGTGCTGATTGTTACAGTCGTGCTGTTATTGTTTTGCATTTCTTATCAAATCGAGCTCTGCCATGTTTGTATTACAGATAcgcaaatgtctttattctttaaaGTTTTATCCACAATGAAAAAAA

Function

NR:

description
collagen alpha-4(IV) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966381.1 True 6617 mRNA 0.57 48 34499546 34568352

Neighbor

gene id symbol gene type direction distance location
LOC110508236 LOC106598267 coding upstream 90055 34352592 ~ 34409491 (+)
extl2 extl2 coding upstream 220845 34269056 ~ 34278701 (+)
LOC110509053 LOC106598276 coding upstream 241715 34251924 ~ 34257831 (+)
LOC110509059 LOC106598314 coding upstream 326379 34127630 ~ 34173167 (+)
LOC110509049 LOC106598340 coding upstream 463616 34029842 ~ 34035930 (+)
LOC110509061 LOC106598202 coding downstream 53503 34621855 ~ 34632610 (+)
agfg1b LOC106568704 coding downstream 71667 34640019 ~ 34646660 (+)
fbxo36b LOC106598179 coding downstream 80499 34648851 ~ 34652522 (+)
LOC110508234 NA coding downstream 84777 34653129 ~ 34654349 (+)
LOC110509067 grk7 coding downstream 123943 34692295 ~ 34700231 (+)
G2131323 NA non-coding upstream 4392 34494796 ~ 34495154 (+)
G2131055 NA non-coding upstream 97244 34402084 ~ 34402302 (+)
G2131042 NA non-coding upstream 123762 34375383 ~ 34375784 (+)
G2130994 NA non-coding upstream 191724 34305851 ~ 34307822 (+)
G2131370 NA non-coding downstream 19170 34587522 ~ 34587779 (+)
G2131371 NA non-coding downstream 20812 34589164 ~ 34589433 (+)
G2131373 LOC106598217 non-coding downstream 21537 34589889 ~ 34590142 (+)
G2131376 NA non-coding downstream 26504 34594856 ~ 34595101 (+)
G2131379 NA non-coding downstream 28893 34597245 ~ 34597472 (+)
G2130749 LOC106598333 other upstream 430452 34038792 ~ 34069094 (+)
G2130731 NA other upstream 491284 34007631 ~ 34008262 (+)
G2129859 NA other upstream 770018 33729148 ~ 33729528 (+)
G2129765 LOC106598425 other upstream 923576 33572108 ~ 33575970 (+)
G2131383 NA other downstream 35133 34603485 ~ 34604953 (+)
G2131416 NA other downstream 118919 34687271 ~ 34687640 (+)
G2131426 NA other downstream 133854 34702206 ~ 34783418 (+)
G2131933 NA other downstream 523347 35091699 ~ 35093034 (+)
G2132291 NA other downstream 1131494 35699846 ~ 35700235 (+)

Expression


Co-expression Network