LOC110509071 (LOC106598156)


Basic Information

Item Value
gene id LOC110509071
gene name LOC106598156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 34773755 ~ 34806814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966438.1
attaatatttagTCATATTTAGGGAGATTTATATTTTCCACAAATGTTGTGATAAGCTTTATTTGTATTTCGGCAACTATATAATTTGGATTGGTGTGTCATTGATATGCAATCttgccttcttttttttttttgatgtgGCATACATCGGCCTAAATAACAATATAAATGATCCATTGATTCAGGCTAGCTATATAgcttcaaaatatgttttatctcACGGAATCATTGCATTCATTCTTACAGCTAAGCATTTACCCCGGTTGTTAATGTAACATATCCGGTTGACCTTTACAATTAGCCGCTTTCATTTCGCGAACAAACTGAGTGGACGGCTGGACCGGATAGAAGGAACGAGAATCAAAGGGCATATCGGAAAGGATCCTCTAAACACATTGTTGGCCTGTCTAGAGAGGGACATTGGGAATGTTTTCATTGTCAACATCCGTCCAACCACAGGTCACTGTCCCCCTGAGTCACCTGATCAATGCTGTCCAATACCTGAAGACTGCAGTGGGCAGCAGCAATGCCGCTGCTAAACCTCAGCATAGAGAGCATGCCTTGGAACAGGACTCGCAGAACACAGAGGCCACGTGGACCCTGAGGGACCTGGGCCTGTCTGACCTGGGCGTGGGGCAGCTGGACGAGCTAATAAGCGCTATGTTACCACGTCTGAGTCAACAGGGGGCGCTGTCCTCATCCAGCCCCAGCCAACAGGCCTGGGggacctctcacctctcctcacatTCCTTCTTCCACAACAAGCATGGGTTCTCTGGTGGTAAAATGGGCACCTCCTACCCTGTTTTCTGCAAACAGATCCCTTCCCCTCTTCAGGCAGTTTGTACAGAGCTCCGCTATTGGCCAGTGTGGATCCAGAACAGAGGCTTTAAAACTCTAGGGAAACACAAGCGACTGCAGGCAGGCTTTGAGCGTCCCATGGAATCAGATGGCTTTACACCCTCCTTTATGAAGGGCCTCCTGATGCGTGATAAGGGGATGGAGGTGGAAACCTTGGACAAGCTTATGAAGAACAAGAATATTCCTGATGGGCAGCAAGATTCTTTCAAGACCGGATTTGCTGAGGGCTTCCTGAAATCCCAAGCTCTGACACAGCGCACACAAGACTCTCTGAGGAGGACGAGGCTGGTCCTGCTGGTCCTGCTGCTCCTGGGACTCTACGGCCTCTCCAAGACGCCCTTCCTATCGGTACGATTCCGAACCACATCAGGCCTGGACTCAGCGGTGGACCCTGTCCACATGAAGAACGTGACATTTGAGCACGTCAAAGGGGTGGAGGAGGCCAAGAACGAGCTGCAGGAGGTGGTGGAGTTCCTCCGGAGCCCAGAGAAGTTCACCGTCCTCGGAGGGAAACTGCCGAGAGggatCTTGCTGGTTGGCCCTCCTGGTACTGGGAAGACTCTGTTGGCCAGAGCTGTGGCTGGAGAAGCCAACGTACCATTTTATTATGCCTCTGGCTCTGAGTTTGATGAGATGTTTGTGGGGGTTGGAGCCAGTCGCATCAGGAACCTCTTCAAGGAAGCCAAAGCAAACACGCCGTGCGTGATCTTCATTGACGAGTTGGACAGCGTCGGAGGAAAGCGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCTGAGATGGACGGGTTCAAACCAAACGAAGGGGTCATTATCATTGGAGCGACAAACTTCCCAGAGGCTTTGGATAAcGCTCTGATTCGACCGGGACGTTTCGACATGCAGGTCACCGTTCCCAAGCCAGATGTGAAGGGGCGCACAGAGATCCTCAACTGGTACCTTAGGAAGATTAAAGTAGACCCTGATGTGGAGGCTGGGATCATcgccaggggaacagtgggcttCTCCGGGGCCGACCTGGAGAACCTGGTCAACCAAGCGGCTCTGAAGGCGGCGGTGGACGGCAAAGACATGGTGACCCTCAAAGAGCTGGAGTTCGCCAAGGACAAGATCCTCATGGGCccagagaggaggagtgtggagatAGATAAAAAGAACAAGGAGATCACAGCGTACCACGAGTCTGGCCACGCTATCGTGGCGTACTACACCAAGGATGCCATGCCCATCAACAAGGCCACCATCATGCCCAGAGGACCTACTCTAGGTCATGTGTCCATGCTCCCAGATGATGACCGCTGGAGCGAGACGCGTGCTCAGCTGCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCAGAGGAGATCATATTTGGCAATGAGTTCATCACCACTGgTGCATCAAGTGACTTTGATGCTGCCACCAGAATTGCAAAAATGATGGTGACCAGATTTGGTATGTGTGAGAGGCTGGGTGTCATGACCTACACTGACCAAACCAAGCAGAGCCCAGAGACACAGGCTGCCATCGAACACGAAGTCAGGAAACTTTTAAAGGATTCGTACGAGCGGGCCAGGGCTCTCCTCAAGTCTCACGCCAAAGAACACCAGAACCTAGCCAACGCCCTGTTGCAATACGAGACGCTGGATGCCAGAGAGATCAAGATGGTCCTGGAGGGCAAGGGCCTGGAGACAAGATGAGACTTCCAAGGGTGGAGGTGTCACGGTTTAATTTGGGAGATCGGGTGAGGGGTGGGAAGAAAATAAATCACTGTCCACGGTGATTTCACAGTCTACGCAAACAGAGCTACGGAGCTGTacgtgtgtatgtacagtgtctTCAGGAAATAttcacagcctgaatttaaaacggattaaattaagtttttgtgtcactggcctacacacaataccccataatatataaaagtggaattatgtttacaaa
>XM_036966439.1
tattaatatttagTCATATTTAGGGAGATTTATATTTTCCACAAATGTTGTGATAAGCTTTATTTGTATTTCGGCAACTATATAATTTGGATTGGTGTGTCATTGATATGCAATCttgccttcttttttttttttgatgtgGCATACATCGGCCTAAATAACAATATAAATGATCCATTGATTCAGGCTAGCTATATAgcttcaaaatatgttttatctcACGGAATCATTGCATTCATTCTTACAGCTAAGCATTTACCCCGGTTGTTAATGTAACATATCCGGTTGACCTTTACAATTAGCCGCTTTCATTTCGCGAACAAACTGAGTGGACGGCTGGACCGGATAGAAGGAACGAGAATCAAAGGGCATATCGGAAAGGATCCTCTAAACACATTGTTGGCCTGTCTAGAGAGGGACATTGGGAATGTTTTCATTGTCAACATCCGTCCAACCACAGGTCACTGTCCCCCTGAGTCACCTGATCAATGCTGTCCAATACCTGAAGACTGCAGTGGGCAGCAGCAATGCCGCTGCTAAACCTCAGCATAGAGAGCATGCCTTGGAACAGGACTCGCAGAACACAGAGGCCACGTGGACCCTGAGGGACCTGGGCCTGTCTGACCTGGGCGTGGGGCAGCTGGACGAGCTAATAAGCGCTATGTTACCACGTCTGAGTCAACAGGGGGCGCTGTCCTCATCCAGCCCCAGCCAACAGGCCTGGGggacctctcacctctcctcacatTCCTTCTTCCACAACAAGCATGGGTTCTCTGGTGGTAAAATGGGCACCTCCTACCCTGTTTTCTGCAAACAGATCCCTTCCCCTCTTCAGGCAGTTTGTACAGAGCTCCGCTATTGGCCAGTGTGGATCCAGAACAGAGGCTTTAAAACTCTAGGGAAACACAAGCGACTGCAGGCAGGCTTTGAGCGTCCCATGGAATCAGATGGCTTTACACCCTCCTTTATGAAGGGCCTCCTGATGCGTGATAAGGGGATGGAGGTGGAAACCTTGGACAAGCTTATGAAGAACAAGAATATTCCTGATGGGCAGCAAGATTCTTTCAAGACCGGATTTGCTGAGGGCTTCCTGAAATCCCAAGCTCTGACACAGCGCACACAAGACTCTCTGAGGAGGACGAGGCTGGTCCTGCTGGTCCTGCTGCTCCTGGGACTCTACGGCCTCTCCAAGACGCCCTTCCTATCGGGCCTGGACTCAGCGGTGGACCCTGTCCACATGAAGAACGTGACATTTGAGCACGTCAAAGGGGTGGAGGAGGCCAAGAACGAGCTGCAGGAGGTGGTGGAGTTCCTCCGGAGCCCAGAGAAGTTCACCGTCCTCGGAGGGAAACTGCCGAGAGggatCTTGCTGGTTGGCCCTCCTGGTACTGGGAAGACTCTGTTGGCCAGAGCTGTGGCTGGAGAAGCCAACGTACCATTTTATTATGCCTCTGGCTCTGAGTTTGATGAGATGTTTGTGGGGGTTGGAGCCAGTCGCATCAGGAACCTCTTCAAGGAAGCCAAAGCAAACACGCCGTGCGTGATCTTCATTGACGAGTTGGACAGCGTCGGAGGAAAGCGGATCGAGTCTCCCATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCTGAGATGGACGGGTTCAAACCAAACGAAGGGGTCATTATCATTGGAGCGACAAACTTCCCAGAGGCTTTGGATAAcGCTCTGATTCGACCGGGACGTTTCGACATGCAGGTCACCGTTCCCAAGCCAGATGTGAAGGGGCGCACAGAGATCCTCAACTGGTACCTTAGGAAGATTAAAGTAGACCCTGATGTGGAGGCTGGGATCATcgccaggggaacagtgggcttCTCCGGGGCCGACCTGGAGAACCTGGTCAACCAAGCGGCTCTGAAGGCGGCGGTGGACGGCAAAGACATGGTGACCCTCAAAGAGCTGGAGTTCGCCAAGGACAAGATCCTCATGGGCccagagaggaggagtgtggagatAGATAAAAAGAACAAGGAGATCACAGCGTACCACGAGTCTGGCCACGCTATCGTGGCGTACTACACCAAGGATGCCATGCCCATCAACAAGGCCACCATCATGCCCAGAGGACCTACTCTAGGTCATGTGTCCATGCTCCCAGATGATGACCGCTGGAGCGAGACGCGTGCTCAGCTGCTGGCCCAGATGGACGTCAGCATGGGAGGCCGCGTGGCAGAGGAGATCATATTTGGCAATGAGTTCATCACCACTGgTGCATCAAGTGACTTTGATGCTGCCACCAGAATTGCAAAAATGATGGTGACCAGATTTGGTATGTGTGAGAGGCTGGGTGTCATGACCTACACTGACCAAACCAAGCAGAGCCCAGAGACACAGGCTGCCATCGAACACGAAGTCAGGAAACTTTTAAAGGATTCGTACGAGCGGGCCAGGGCTCTCCTCAAGTCTCACGCCAAAGAACACCAGAACCTAGCCAACGCCCTGTTGCAATACGAGACGCTGGATGCCAGAGAGATCAAGATGGTCCTGGAGGGCAAGGGCCTGGAGACAAGATGAGACTTCCAAGGGTGGAGGTGTCACGGTTTAATTTGGGAGATCGGGTGAGGGGTGGGAAGAAAATAAATCACTGTCCACGGTGATTTCACAGTCTACGCAAACAGAGCTACGGAGCTGTacgtgtgtatgtacagtgtctTCAGGAAATAttcacagcctgaatttaaaacggattaaattaagtttttgtgtcactggcctacacacaataccccataatatataaaagtggaattatgtttacaaa

Function

NR:

description
ATP-dependent zinc metalloprotease YME1L1-like isoform X2

GO: NA

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966438.1 False 2833 mRNA 0.51 18 34773755 34806813
XM_036966439.1 True 2813 mRNA 0.51 18 34773755 34806814

Neighbor

gene id symbol gene type direction distance location
gk5 gk5 coding downstream 12332 34737462 ~ 34761423 (-)
LOC110509072 atp1b3 coding downstream 45558 34713267 ~ 34728197 (-)
LOC110508232 NA coding downstream 169623 34572033 ~ 34604132 (-)
LOC110509050 LOC106598248 coding downstream 291896 34422172 ~ 34481859 (-)
LOC110509056 LOC106598260 coding downstream 452165 34304706 ~ 34321590 (-)
LOC110509075 LOC106598143 coding upstream 5903 34812717 ~ 34824535 (-)
LOC110508238 LOC106598127 coding upstream 61699 34868513 ~ 34888930 (-)
anxa13l anxa13 coding upstream 104281 34911095 ~ 34921612 (-)
LOC110509081 LOC106598107 coding upstream 118572 34925386 ~ 35056378 (-)
LOC110509086 LOC106598057 coding upstream 285408 35092222 ~ 35105019 (-)
G2131736 NA non-coding downstream 88487 34684981 ~ 34685268 (-)
G2131735 NA non-coding downstream 91273 34682278 ~ 34682482 (-)
G2131702 NA non-coding downstream 153831 34619644 ~ 34619924 (-)
G2131699 NA non-coding downstream 163920 34609030 ~ 34609835 (-)
G2131696 NA non-coding downstream 176232 34597255 ~ 34597523 (-)
G2131809 NA non-coding upstream 46746 34853560 ~ 34854537 (-)
G2131816 NA non-coding upstream 59851 34866665 ~ 34867243 (-)
G2131824 NA non-coding upstream 68240 34875054 ~ 34875690 (-)
G2131836 NA non-coding upstream 85071 34891885 ~ 34892090 (-)
G2131851 LOC106598110 non-coding upstream 129694 34936508 ~ 34945229 (-)
G2131641 NA other downstream 255626 34516522 ~ 34518129 (-)
G2131621 NA other downstream 287579 34485869 ~ 34486176 (-)
G2130780 LOC106598333 other downstream 705682 34041438 ~ 34068073 (-)
G2130771 LOC106598333 other downstream 707090 34040206 ~ 34066665 (-)
lyrm4 lyrm4 other upstream 1198675 36005489 ~ 36017873 (-)
LOC118944844 riok1 other upstream 1216966 36023714 ~ 36025735 (-)
G2132971 NA other upstream 1417399 36224213 ~ 36225379 (-)
G2132966 NA other upstream 1428701 36235515 ~ 36249775 (-)
G2133007 NA other upstream 1456188 36263002 ~ 36263330 (-)

Expression


Co-expression Network